RchiOBHm_Chr1g0378961

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000419
Physical Location & Seq
Forward (+)
65195170 .. 65202626
7457 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60233

Sequence Viewer

Length: 273 bp
ATGGAGGAGAAATCGGGTCGGGTCGGGCTTTCGGTCTCTAAATATTTGAAGCCCGAGACTGAACCGAAAATATACATTCGGGTCGGGCTTTGCACCGAACTGAGAATTTCCATACTAAAACCGAACCGAATCGGGCTTTTTTGCTCAGTCTGGGTCGGGTCTTCGGTCTTTCGGGTCCGGACGCCCACCCTTAATATAGGCGGCAACGTTTTGAGCCAAAATGCTGTAGGCAGCATGTTTCCCTCCATGTTTTCACATTTTAATTTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.04

Weight (kDa)

9.92

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 177
AciI CCGC 1 cut(s) 201
AclI AACGTT 1 cut(s) 207
AcsI RAATTY 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 182
AgsI TTSAA 1 cut(s) 49
Alw26I GTCTC 2 cut(s) 40, 50
Ama87I CYCGRG 1 cut(s) 53
Aor13HI TCCGGA 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 53
AvaII GGWCC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 243
BcoDI GTCTC 2 cut(s) 40, 50
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 2 cut(s) 202, 232
BlsI GCNGC 2 cut(s) 203, 233
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 40
BsaWI WCCGGW 1 cut(s) 177
BseAI TCCGGA 1 cut(s) 177
BseMII CTCAG 2 cut(s) 92, 159
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 178
BsmAI GTCTC 2 cut(s) 40, 50
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 53
Bsp13I TCCGGA 1 cut(s) 177
BspACI CCGC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 93, 158
BspEI TCCGGA 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 40
BssNI GRCGYC 1 cut(s) 182
BstACI GRCGYC 1 cut(s) 182
BstDEI CTNAG 2 cut(s) 101, 145
BstMAI GTCTC 2 cut(s) 40, 50
BstNSI RCATGY 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 243
BstV2I GAAGAC 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 1 cut(s) 190
CviAII CATG 2 cut(s) 235, 247
CviJI RGCY 5 cut(s) 28, 52, 88, 136, 216
CviKI_1 RGCY 5 cut(s) 28, 52, 88, 136, 216
DdeI CTNAG 2 cut(s) 101, 145
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 53
FaeI CATG 2 cut(s) 238, 250
FaiI YATR 5 cut(s) 73, 113, 197, 236, 248
FatI CATG 2 cut(s) 234, 246
Fnu4HI GCNGC 2 cut(s) 202, 232
Fsp4HI GCNGC 2 cut(s) 202, 232
GluI GCNGC 2 cut(s) 202, 232
HapII CCGG 1 cut(s) 178
HgaI GACGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 2 cut(s) 238, 250
HinfI GANTC 1 cut(s) 129
HpaII CCGG 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 93
HpyF3I CTNAG 2 cut(s) 101, 145
HpySE526I ACGT 1 cut(s) 207
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 2 cut(s) 238, 250
Kpn2I TCCGGA 1 cut(s) 177
LpnPI CCDG 2 cut(s) 136, 191
Lsp1109I GCAGC 1 cut(s) 243
MaeII ACGT 1 cut(s) 207
MboII GAAGA 1 cut(s) 153
MluCI AATT 2 cut(s) 105, 262
MnlI CCTC 1 cut(s) 253
MroI TCCGGA 1 cut(s) 177
MseI TTAA 2 cut(s) 192, 261
MspI CCGG 1 cut(s) 178
NlaIII CATG 2 cut(s) 238, 250
NlaIV GGNNCC 1 cut(s) 176
NspI RCATGY 1 cut(s) 238
PfeI GAWTC 1 cut(s) 129
PkrI GCNGC 2 cut(s) 203, 233
Psp1406I AACGTT 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 192, 261
SatI GCNGC 2 cut(s) 202, 232
Sau96I GGNCC 1 cut(s) 175
SetI ASST 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 1 cut(s) 175
Sse9I AATT 2 cut(s) 105, 262
SsiI CCGC 1 cut(s) 201
SspI AATATT 1 cut(s) 44
TaiI ACGT 1 cut(s) 210
TaqII GACCGA 2 cut(s) 22, 154
TasI AATT 2 cut(s) 105, 262
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 2 cut(s) 192, 261
Tru9I TTAA 2 cut(s) 192, 261
TseI GCWGC 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 105
XceI RCATGY 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.