Rmu_sc0002759.1_g000032

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002759.1
OG0000419
Physical Location & Seq
Forward (+)
134769 .. 135677
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002759.1_g000032.1.cds

Sequence Viewer

Length: 909 bp
atgttccctgcactctttgctctagctgaagaactctatgagaatgccagaccacaatctgaagaaatccatatacagcagagtgctgtaagaaaagaaaaaatttccttccttgaaagtccagaaagtgctagggtcccaatcatagcactcaatgaatcagatttgcatgaatttcacaatctgataggaaggcacaattcagaagacttagttcctctaactctttttattgtttcaggaccttatgttgggagatacttggtcaatgttcagagtgaacatcctcaggaacacaagctctggcttgttgaaaatggttttgcccataatctgtggactaaaacaaatgatgatctgaaaggtttgccgccaatcattgtcaacacagtcaaaaacattagaaaaactgactgtatgcttcttctgaagttcagatacactcctccagaatggatccagaaggcaaacggtgaagttgaatatattcctccatatcattacatgagaatcattcaaatgaaatatcttcaaccagcctgtgttgggtacaatggtcaaccaaattctagcattccctggataaaggccatgaccctggaatacatgaagaagatcatctctgaagatgtcaacaatactttcctggcagcaggagagaaaattattatcactgcttaccatcatcctgacgtagtcagcagtgacctatttctatctctcaccagaaaagagatagactcgacgatggcatgcatgcactgggtggaaaagcttgaaaatgacaaccactacaaaatgtatgttgatacagacgtcgaggacaatgcaacaacaactcgcttggcccaggcagacaacaactcctttgtctttggccaccattctgaaacagatgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

302

Amino Acids

34.85

Weight (kDa)

5.43

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 819
AciI CCGC 1 cut(s) 371
AclWI GGATC 2 cut(s) 451, 464
AcoI YGGCCR 1 cut(s) 877
AcsI RAATTY 3 cut(s) 102, 173, 565
AcuI CTGAAG 4 cut(s) 48, 81, 449, 645
AcyI GRCGYC 1 cut(s) 816
AdeI CACNNNGTG 1 cut(s) 766
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 2 cut(s) 251, 546
AflIII ACRYGT 1 cut(s) 903
AgsI TTSAA 6 cut(s) 116, 314, 482, 518, 533, 779
AjnI CCWGG 4 cut(s) 578, 597, 645, 849
AluBI AGCT 3 cut(s) 26, 301, 775
AluI AGCT 3 cut(s) 26, 301, 775
AlwI GGATC 2 cut(s) 451, 464
AoxI GGCC 3 cut(s) 588, 846, 877
ApeKI GCWGC 1 cut(s) 650
ApoI RAATTY 3 cut(s) 102, 173, 565
Asp700I GAANNNNTTC 1 cut(s) 486
AspS9I GGNCC 3 cut(s) 136, 242, 847
AsuHPI GGTGA 2 cut(s) 485, 715
AvaII GGWCC 2 cut(s) 136, 242
AxyI CCTNAGG 1 cut(s) 288
BaeI ACNNNNGTAYC 4 cut(s) 541, 574, 801, 834
BalI TGGCCA 1 cut(s) 879
BamHI GGATCC 1 cut(s) 456
BarI GAAGNNNNNNTAC 2 cut(s) 422, 454
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 662
BccI CCATC 2 cut(s) 690, 742
BcgI CGANNNNNNTGC 2 cut(s) 809, 843
BciT130I CCWGG 4 cut(s) 580, 599, 647, 851
BfaI CTAG 3 cut(s) 23, 132, 570
BisI GCNGC 2 cut(s) 371, 651
BlsI GCNGC 2 cut(s) 372, 652
Bme1390I CCNGG 4 cut(s) 580, 599, 647, 851
Bme18I GGWCC 2 cut(s) 136, 242
BmgT120I GGNCC 3 cut(s) 136, 242, 847
BmiI GGNNCC 3 cut(s) 137, 138, 458
BmrFI CCNGG 4 cut(s) 580, 599, 647, 851
BmrI ACTGGG 1 cut(s) 772
BmuI ACTGGG 1 cut(s) 772
BpiI GAAGAC 1 cut(s) 213
BplI GAGNNNNNCTC 2 cut(s) 725, 757
BpmI CTGGAG 1 cut(s) 432
BsaHI GRCGYC 1 cut(s) 816
BsaJI CCNNGG 3 cut(s) 578, 597, 849
BsaXI ACNNNNNCTCC 2 cut(s) 848, 878
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 546
Bse1I ACTGG 1 cut(s) 767
Bse21I CCTNAGG 1 cut(s) 288
BseBI CCWGG 4 cut(s) 580, 599, 647, 851
BseDI CCNNGG 3 cut(s) 578, 597, 849
BseGI GGATG 2 cut(s) 283, 685
BseLI CCNNNNNNNGG 2 cut(s) 251, 546
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 767
BseRI GAGGAG 1 cut(s) 435
BseXI GCAGC 1 cut(s) 662
BshFI GGCC 3 cut(s) 590, 848, 879
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 251, 546
BsmFI GGGAC 1 cut(s) 122
BsmI GAATGC 2 cut(s) 49, 573
BsnI GGCC 3 cut(s) 590, 848, 879
Bsp143I GATC 3 cut(s) 355, 456, 615
BspACI CCGC 1 cut(s) 371
BspANI GGCC 3 cut(s) 590, 848, 879
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 3 cut(s) 137, 138, 458
BspPI GGATC 2 cut(s) 451, 464
BsrI ACTGG 1 cut(s) 767
BssECI CCNNGG 3 cut(s) 578, 597, 849
BssMI GATC 3 cut(s) 355, 456, 615
BssNI GRCGYC 1 cut(s) 816
Bst2UI CCWGG 4 cut(s) 580, 599, 647, 851
Bst4CI ACNGT 3 cut(s) 391, 416, 473
BstACI GRCGYC 1 cut(s) 816
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 754, 758
BstDEI CTNAG 2 cut(s) 211, 288
BstF5I GGATG 2 cut(s) 283, 685
BstKTI GATC 3 cut(s) 358, 459, 618
BstMBI GATC 3 cut(s) 355, 456, 615
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 4 cut(s) 580, 599, 647, 851
BstNSI RCATGY 3 cut(s) 756, 760, 907
BstSCI CCNGG 4 cut(s) 578, 597, 645, 849
BstV1I GCAGC 1 cut(s) 662
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 456
BstXI CCANNNNNNTGG 1 cut(s) 598
BstYI RGATCY 1 cut(s) 456
Bsu36I CCTNAGG 1 cut(s) 288
BsuRI GGCC 3 cut(s) 590, 848, 879
BtsCI GGATG 2 cut(s) 283, 685
BtsI GCAGTG 2 cut(s) 672, 709
BtsIMutI CAGTG 3 cut(s) 672, 709, 760
Cac8I GCNNGC 2 cut(s) 754, 758
Cfr13I GGNCC 3 cut(s) 136, 242, 847
Csp6I GTAC 1 cut(s) 550
CviAII CATG 7 cut(s) 170, 505, 592, 607, 753, 757, 904
CviJI RGCY 8 cut(s) 26, 301, 307, 539, 590, 775, 848, 879
CviKI_1 RGCY 8 cut(s) 26, 301, 307, 539, 590, 775, 848, 879
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 2 cut(s) 211, 288
DpnI GATC 3 cut(s) 357, 458, 617
DpnII GATC 3 cut(s) 355, 456, 615
DraIII CACNNNGTG 1 cut(s) 766
EaeI YGGCCR 1 cut(s) 877
Eco47I GGWCC 2 cut(s) 136, 242
Eco57I CTGAAG 4 cut(s) 48, 81, 449, 645
Eco81I CCTNAGG 1 cut(s) 288
EcoO109I RGGNCCY 2 cut(s) 136, 242
EcoRII CCWGG 4 cut(s) 578, 597, 645, 849
EcoT22I ATGCAT 1 cut(s) 758
FaeI CATG 7 cut(s) 173, 508, 595, 610, 756, 760, 907
FaqI GGGAC 1 cut(s) 122
FatI CATG 7 cut(s) 169, 504, 591, 606, 752, 756, 903
Fnu4HI GCNGC 2 cut(s) 371, 651
FokI GGATG 2 cut(s) 270, 672
Fsp4HI GCNGC 2 cut(s) 371, 651
FspBI CTAG 3 cut(s) 23, 132, 570
GluI GCNGC 2 cut(s) 371, 651
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 3 cut(s) 590, 848, 879
Hin1I GRCGYC 1 cut(s) 816
Hin1II CATG 7 cut(s) 173, 508, 595, 610, 756, 760, 907
HincII GTYRAC 3 cut(s) 385, 560, 634
HindII GTYRAC 3 cut(s) 385, 560, 634
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 3 cut(s) 158, 510, 740
HphI GGTGA 2 cut(s) 485, 715
Hpy166II GTNNAC 5 cut(s) 281, 339, 385, 560, 634
Hpy188III TCNNGA 6 cut(s) 122, 240, 290, 449, 460, 689
Hpy8I GTNNAC 5 cut(s) 281, 339, 385, 560, 634
Hpy99I CGWCG 2 cut(s) 748, 821
HpyAV CCTTC 3 cut(s) 118, 186, 457
HpyCH4III ACNGT 3 cut(s) 391, 416, 473
HpyCH4IV ACGT 2 cut(s) 693, 816
HpyCH4V TGCA 5 cut(s) 11, 169, 756, 760, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 2 cut(s) 211, 288
HpySE526I ACGT 2 cut(s) 693, 816
Hsp92I GRCGYC 1 cut(s) 816
Hsp92II CATG 7 cut(s) 173, 508, 595, 610, 756, 760, 907
KflI GGGWCCC 1 cut(s) 136
Kzo9I GATC 3 cut(s) 355, 456, 615
Lsp1109I GCAGC 1 cut(s) 662
MaeI CTAG 3 cut(s) 23, 132, 570
MaeII ACGT 2 cut(s) 693, 816
MaeIII GTNAC 1 cut(s) 704
MalI GATC 3 cut(s) 357, 458, 617
MboI GATC 3 cut(s) 355, 456, 615
MboII GAAGA 8 cut(s) 41, 74, 218, 416, 521, 622, 625, 638
MflI RGATCY 1 cut(s) 456
MlsI TGGCCA 1 cut(s) 879
MluCI AATT 5 cut(s) 102, 173, 199, 565, 663
MluNI TGGCCA 1 cut(s) 879
MlyI GAGTC 1 cut(s) 734
MnlI CCTC 5 cut(s) 228, 297, 456, 501, 814
Mox20I TGGCCA 1 cut(s) 879
Mph1103I ATGCAT 1 cut(s) 758
MroXI GAANNNNTTC 1 cut(s) 486
MscI TGGCCA 1 cut(s) 879
MslI CAYNNNNRTG 1 cut(s) 518
Msp20I TGGCCA 1 cut(s) 879
MspR9I CCNGG 4 cut(s) 580, 599, 647, 851
Mva1269I GAATGC 2 cut(s) 49, 573
MvaI CCWGG 4 cut(s) 580, 599, 647, 851
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 3 cut(s) 355, 456, 615
NlaIII CATG 7 cut(s) 173, 508, 595, 610, 756, 760, 907
NlaIV GGNNCC 3 cut(s) 137, 138, 458
NmuCI GTSAC 1 cut(s) 704
NsiI ATGCAT 1 cut(s) 758
NspI RCATGY 3 cut(s) 756, 760, 907
PaeI GCATGC 2 cut(s) 756, 760
PciI ACATGT 1 cut(s) 903
PctI GAATGC 2 cut(s) 49, 573
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 158, 510
PflFI GACNNNGTC 1 cut(s) 695
PkrI GCNGC 2 cut(s) 372, 652
PleI GAGTC 1 cut(s) 734
PpsI GAGTC 1 cut(s) 734
PpuMI RGGWCCY 2 cut(s) 136, 242
PscI ACATGT 1 cut(s) 903
Psp5II RGGWCCY 2 cut(s) 136, 242
Psp6I CCWGG 4 cut(s) 578, 597, 645, 849
PspGI CCWGG 4 cut(s) 578, 597, 645, 849
PspN4I GGNNCC 3 cut(s) 137, 138, 458
PspPI GGNCC 3 cut(s) 136, 242, 847
PspPPI RGGWCCY 2 cut(s) 136, 242
PsuI RGATCY 1 cut(s) 456
PsyI GACNNNGTC 1 cut(s) 695
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
RseI CAYNNNNRTG 1 cut(s) 518
SatI GCNGC 2 cut(s) 371, 651
Sau3AI GATC 3 cut(s) 355, 456, 615
Sau96I GGNCC 3 cut(s) 136, 242, 847
SchI GAGTC 1 cut(s) 734
ScrFI CCNGG 4 cut(s) 580, 599, 647, 851
SetI ASST 8 cut(s) 28, 247, 303, 367, 696, 711, 777, 819
SinI GGWCC 2 cut(s) 136, 242
SmiMI CAYNNNNRTG 1 cut(s) 518
SphI GCATGC 2 cut(s) 756, 760
Sse9I AATT 5 cut(s) 102, 173, 199, 565, 663
SsiI CCGC 1 cut(s) 371
SspMI CTAG 3 cut(s) 23, 132, 570
StyD4I CCNGG 4 cut(s) 578, 597, 645, 849
TaaI ACNGT 3 cut(s) 391, 416, 473
TaiI ACGT 2 cut(s) 696, 819
TaqI TCGA 2 cut(s) 743, 819
TasI AATT 5 cut(s) 102, 173, 199, 565, 663
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 2 cut(s) 158, 510
TscAI CASTG 3 cut(s) 679, 709, 767
TseFI GTSAC 1 cut(s) 704
TseI GCWGC 1 cut(s) 650
Tsp45I GTSAC 1 cut(s) 704
TspDTI ATGAA 4 cut(s) 171, 186, 536, 623
TspRI CASTG 3 cut(s) 679, 709, 767
Tth111I GACNNNGTC 1 cut(s) 695
VpaK11BI GGWCC 2 cut(s) 136, 242
XapI RAATTY 3 cut(s) 102, 173, 565
XceI RCATGY 3 cut(s) 756, 760, 907
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 3 cut(s) 23, 132, 570
ZraI GACGTC 1 cut(s) 817
Zsp2I ATGCAT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.