Rh3BG164500

Polyprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000419
Physical Location & Seq
Forward (+)
14185249 .. 14186169
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG164500.1

Sequence Viewer

Length: 921 bp
ATGCAACTCTATCAGAACAGAATATCATTTCTCGGTACAGAGATTGGTAATGGAGAAATCAGACTTCAGCCACATATCACCAAAAAATTACTTGAAGAGTTTGGTGATACTTTTTCCAGTAAAAATGAACTACAGAAGTTCCTGGGAATAGTAAACTACGCGAAGCCGTGGTTAAAAGATGTCGGCAAGATTGCTGGTCCACTTTACGCTAGGACCGGGACAGCACCTTGGATTCCTTTCTCGGAGGAAGACGCCAAGATTGTCAGAATTATTAAAGCAAGGTGTGCAGAGCTACCCACTCTTCACATGCCGATTGATGACGAGTACCTTGTCGTTGGTACAGATGGGTCCCTAGAAGGTTGGGGCGGTGTGCTTTATGCTAAAGCAAATAAGTATTCACCGAAAAAAGACGAAAAGATCTGTCGGTATGGCAGTGGAATCTTTAAAGAAAAAGCAAAAAGATTCACGTCTATGGAAGCTGAGCTGTTAGCTGTCTGCTATGCACTAGAGAGCTTCAAACTGTTCCTTATCCCGAAGGAAGAGATAACAGTCTGTACGGATTGTGCTGCTATAGTATCGCACTACGAAAAGCAACTGGAAGGAACGGCTAGCAAAGGTCGATGGGTCTCATTCGCTGCAAGGATCGAGCTCATAAATCCTTCTATAAATTTCGAGCATGTTAAAGGGAAAGATAACTCACTCCCAGATCTGCTCTCTCGTCTTAAATCAGCTGGGTTACAACCCATCAGCCCTGGTGAGTACGAGAGCTCTCTAAAACTCAGAGAGAAAGCTGGTTACAATATCAGCAAGGCGGAGTGGCGCCAAATTAACTCTCCTTTCCGACAGGAGATTGAAGCCCAGAAGCGGCAATATGAAGAAGCAATCAGGCTTCAGACAGCCGCAAGGCGGGAGGTATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MP RVT_1

Protein Analysis

306

Amino Acids

34.68

Weight (kDa)

8.75

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 81 - 178 6.9e-11 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 108 - 210 1.6e-12 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 819
AccI GTMKAC 1 cut(s) 915
AccII CGCG 1 cut(s) 161
AciI CCGC 5 cut(s) 366, 812, 865, 900, 907
AclWI GGATC 1 cut(s) 650
AcsI RAATTY 1 cut(s) 667
AcuI CTGAAG 2 cut(s) 50, 875
AcyI GRCGYC 2 cut(s) 252, 820
AfaI GTAC 5 cut(s) 37, 326, 340, 556, 761
AfiI CCNNNNNNNGG 2 cut(s) 864, 906
AgsI TTSAA 3 cut(s) 95, 517, 854
AjiI CACGTC 1 cut(s) 468
AjnI CCWGG 2 cut(s) 141, 751
AluBI AGCT 9 cut(s) 292, 479, 484, 491, 513, 649, 731, 768, 791
AluI AGCT 9 cut(s) 292, 479, 484, 491, 513, 649, 731, 768, 791
Alw21I GWGCWC 2 cut(s) 651, 770
Alw26I GTCTC 1 cut(s) 631
AlwI GGATC 1 cut(s) 650
ApeKI GCWGC 2 cut(s) 566, 635
ApoI RAATTY 1 cut(s) 667
AspLEI GCGC 1 cut(s) 822
AspS9I GGNCC 3 cut(s) 197, 213, 348
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 4 cut(s) 70, 116, 390, 767
AsuNHI GCTAGC 1 cut(s) 608
AvaII GGWCC 3 cut(s) 197, 213, 348
BanI GGYRCC 1 cut(s) 819
BanII GRGCYC 2 cut(s) 651, 770
BbsI GAAGAC 1 cut(s) 255
Bbv12I GWGCWC 2 cut(s) 651, 770
BbvI GCAGC 2 cut(s) 553, 622
BccI CCATC 3 cut(s) 338, 615, 752
BceAI ACGGC 2 cut(s) 151, 621
BciT130I CCWGG 2 cut(s) 143, 753
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 631
BfaI CTAG 4 cut(s) 210, 353, 506, 609
BfmI CTRYAG 2 cut(s) 131, 570
BfoI RGCGCY 1 cut(s) 823
BglII AGATCT 2 cut(s) 417, 706
BisI GCNGC 4 cut(s) 567, 636, 866, 900
BlpI GCTNAGC 1 cut(s) 480
BlsI GCNGC 4 cut(s) 568, 637, 867, 901
Bme1390I CCNGG 3 cut(s) 143, 217, 753
Bme18I GGWCC 3 cut(s) 197, 213, 348
BmgBI CACGTC 1 cut(s) 468
BmgT120I GGNCC 3 cut(s) 197, 213, 348
BmiI GGNNCC 3 cut(s) 349, 350, 821
BmrFI CCNGG 3 cut(s) 143, 217, 753
BmtI GCTAGC 1 cut(s) 612
BpiI GAAGAC 1 cut(s) 255
Bpu1102I GCTNAGC 1 cut(s) 480
BpuMI CCSGG 1 cut(s) 217
BsaHI GRCGYC 2 cut(s) 252, 820
BsaI GGTCTC 1 cut(s) 631
BsaJI CCNNGG 4 cut(s) 142, 167, 227, 751
Bsc4I CCNNNNNNNGG 2 cut(s) 864, 906
Bse1I ACTGG 2 cut(s) 117, 600
BseBI CCWGG 2 cut(s) 143, 753
BseDI CCNNGG 4 cut(s) 142, 167, 227, 751
BseLI CCNNNNNNNGG 2 cut(s) 864, 906
BseMII CTCAG 2 cut(s) 471, 793
BseNI ACTGG 2 cut(s) 117, 600
BseXI GCAGC 2 cut(s) 553, 622
BseYI CCCAGC 1 cut(s) 731
BsgI GTGCAG 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 819
BsiHKAI GWGCWC 2 cut(s) 651, 770
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 2 cut(s) 232, 334
BslI CCNNNNNNNGG 2 cut(s) 864, 906
BsmAI GTCTC 1 cut(s) 631
BsmFI GGGAC 2 cut(s) 232, 334
Bso31I GGTCTC 1 cut(s) 631
Bsp1286I GDGCHC 2 cut(s) 651, 770
Bsp143I GATC 3 cut(s) 417, 642, 706
Bsp1720I GCTNAGC 1 cut(s) 480
BspACI CCGC 5 cut(s) 366, 812, 865, 900, 907
BspCNI CTCAG 2 cut(s) 472, 792
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 3 cut(s) 349, 350, 821
BspOI GCTAGC 1 cut(s) 612
BspPI GGATC 1 cut(s) 650
BspT107I GGYRCC 1 cut(s) 819
BspTNI GGTCTC 1 cut(s) 631
BsrI ACTGG 2 cut(s) 117, 600
BssECI CCNNGG 4 cut(s) 142, 167, 227, 751
BssMI GATC 3 cut(s) 417, 642, 706
BssNAI GTATAC 1 cut(s) 916
BssNI GRCGYC 2 cut(s) 252, 820
BssT1I CCWWGG 1 cut(s) 227
Bst1107I GTATAC 1 cut(s) 916
Bst2UI CCWGG 2 cut(s) 143, 753
Bst4CI ACNGT 2 cut(s) 522, 550
Bst6I CTCTTC 3 cut(s) 90, 306, 534
BstACI GRCGYC 2 cut(s) 252, 820
BstAPI GCANNNNNTGC 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 610
BstDEI CTNAG 2 cut(s) 480, 779
BstDSI CCRYGG 1 cut(s) 167
BstFNI CGCG 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 823
BstHHI GCGC 1 cut(s) 822
BstKTI GATC 3 cut(s) 420, 645, 709
BstMAI GTCTC 1 cut(s) 631
BstMBI GATC 3 cut(s) 417, 642, 706
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 2 cut(s) 143, 753
BstNSI RCATGY 2 cut(s) 310, 680
BstSCI CCNGG 3 cut(s) 141, 215, 751
BstSFI CTRYAG 2 cut(s) 131, 570
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 2 cut(s) 553, 622
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 2 cut(s) 417, 706
BstYI RGATCY 2 cut(s) 417, 706
BstZ17I GTATAC 1 cut(s) 916
BtgI CCRYGG 1 cut(s) 167
BtrI CACGTC 1 cut(s) 468
BtsI GCAGTG 1 cut(s) 439
BtsIMutI CAGTG 1 cut(s) 439
Cac8I GCNNGC 1 cut(s) 610
CfoI GCGC 1 cut(s) 822
Cfr13I GGNCC 3 cut(s) 197, 213, 348
CseI GACGC 1 cut(s) 260
Csp6I GTAC 5 cut(s) 36, 325, 339, 555, 760
CviAII CATG 2 cut(s) 307, 677
CviQI GTAC 5 cut(s) 36, 325, 339, 555, 760
DdeI CTNAG 2 cut(s) 480, 779
DinI GGCGCC 1 cut(s) 821
DpnI GATC 3 cut(s) 419, 644, 708
DpnII GATC 3 cut(s) 417, 642, 706
DraI TTTAAA 1 cut(s) 445
Eam1104I CTCTTC 3 cut(s) 90, 306, 534
EarI CTCTTC 3 cut(s) 90, 306, 534
EciI GGCGGA 1 cut(s) 827
Ecl136II GAGCTC 2 cut(s) 649, 768
Eco130I CCWWGG 1 cut(s) 227
Eco24I GRGCYC 2 cut(s) 651, 770
Eco31I GGTCTC 1 cut(s) 631
Eco47I GGWCC 3 cut(s) 197, 213, 348
Eco53kI GAGCTC 2 cut(s) 649, 768
Eco57I CTGAAG 2 cut(s) 50, 875
EcoICRI GAGCTC 2 cut(s) 649, 768
EcoO109I RGGNCCY 1 cut(s) 348
EcoRII CCWGG 2 cut(s) 141, 751
EcoT14I CCWWGG 1 cut(s) 227
EcoT38I GRGCYC 2 cut(s) 651, 770
EgeI GGCGCC 1 cut(s) 821
EheI GGCGCC 1 cut(s) 821
ErhI CCWWGG 1 cut(s) 227
FaeI CATG 2 cut(s) 310, 680
FaqI GGGAC 2 cut(s) 232, 334
FatI CATG 2 cut(s) 306, 676
FauI CCCGC 1 cut(s) 900
FblI GTMKAC 1 cut(s) 915
Fnu4HI GCNGC 4 cut(s) 567, 636, 866, 900
FriOI GRGCYC 2 cut(s) 651, 770
Fsp4HI GCNGC 4 cut(s) 567, 636, 866, 900
FspBI CTAG 4 cut(s) 210, 353, 506, 609
GlaI GCGC 1 cut(s) 821
GluI GCNGC 4 cut(s) 567, 636, 866, 900
GsaI CCCAGC 1 cut(s) 735
HaeII RGCGCY 1 cut(s) 823
HapII CCGG 1 cut(s) 216
HgaI GACGC 1 cut(s) 260
HhaI GCGC 1 cut(s) 822
Hin1I GRCGYC 2 cut(s) 252, 820
Hin1II CATG 2 cut(s) 310, 680
Hin6I GCGC 1 cut(s) 820
HinP1I GCGC 1 cut(s) 820
HinfI GANTC 3 cut(s) 232, 438, 462
HpaII CCGG 1 cut(s) 216
HphI GGTGA 4 cut(s) 70, 116, 390, 767
Hpy166II GTNNAC 3 cut(s) 154, 200, 916
Hpy188I TCNGA 7 cut(s) 15, 62, 244, 266, 782, 842, 894
Hpy188III TCNNGA 1 cut(s) 532
Hpy8I GTNNAC 3 cut(s) 154, 200, 916
HpyAV CCTTC 4 cut(s) 350, 529, 593, 669
HpyCH4III ACNGT 2 cut(s) 522, 550
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 4 cut(s) 4, 287, 503, 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 2 cut(s) 480, 779
HpySE526I ACGT 1 cut(s) 467
Hsp92I GRCGYC 2 cut(s) 252, 820
Hsp92II CATG 2 cut(s) 310, 680
HspAI GCGC 1 cut(s) 820
KasI GGCGCC 1 cut(s) 819
KflI GGGWCCC 1 cut(s) 348
Kzo9I GATC 3 cut(s) 417, 642, 706
Lsp1109I GCAGC 2 cut(s) 553, 622
MaeI CTAG 4 cut(s) 210, 353, 506, 609
MaeII ACGT 1 cut(s) 467
MaeIII GTNAC 2 cut(s) 735, 794
MalI GATC 3 cut(s) 419, 644, 708
MboI GATC 3 cut(s) 417, 642, 706
MboII GAAGA 5 cut(s) 107, 260, 293, 551, 887
MflI RGATCY 2 cut(s) 417, 706
MhlI GDGCHC 2 cut(s) 651, 770
MluCI AATT 4 cut(s) 86, 267, 667, 825
Mly113I GGCGCC 1 cut(s) 820
MmeI TCCRAC 1 cut(s) 865
MnlI CCTC 2 cut(s) 238, 904
MseI TTAA 6 cut(s) 173, 273, 444, 681, 723, 828
MslI CAYNNNNRTG 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 3 cut(s) 143, 217, 753
MvaI CCWGG 2 cut(s) 143, 753
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 284
NarI GGCGCC 1 cut(s) 820
NciI CCSGG 1 cut(s) 217
NdeII GATC 3 cut(s) 417, 642, 706
NheI GCTAGC 1 cut(s) 608
NlaIII CATG 2 cut(s) 310, 680
NlaIV GGNNCC 3 cut(s) 349, 350, 821
NspI RCATGY 2 cut(s) 310, 680
PfeI GAWTC 3 cut(s) 232, 438, 462
PkrI GCNGC 4 cut(s) 568, 637, 867, 901
PluTI GGCGCC 1 cut(s) 823
PpuMI RGGWCCY 1 cut(s) 348
Psp124BI GAGCTC 2 cut(s) 651, 770
Psp5II RGGWCCY 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 141, 751
PspFI CCCAGC 1 cut(s) 731
PspGI CCWGG 2 cut(s) 141, 751
PspN4I GGNNCC 3 cut(s) 349, 350, 821
PspPI GGNCC 3 cut(s) 197, 213, 348
PspPPI RGGWCCY 1 cut(s) 348
PsuI RGATCY 2 cut(s) 417, 706
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 5 cut(s) 37, 326, 340, 556, 761
RsaNI GTAC 5 cut(s) 36, 325, 339, 555, 760
RseI CAYNNNNRTG 1 cut(s) 470
SacI GAGCTC 2 cut(s) 651, 770
SaqAI TTAA 6 cut(s) 173, 273, 444, 681, 723, 828
SatI GCNGC 4 cut(s) 567, 636, 866, 900
Sau3AI GATC 3 cut(s) 417, 642, 706
Sau96I GGNCC 3 cut(s) 197, 213, 348
ScrFI CCNGG 3 cut(s) 143, 217, 753
SduI GDGCHC 2 cut(s) 651, 770
SfcI CTRYAG 2 cut(s) 131, 570
SfoI GGCGCC 1 cut(s) 821
SinI GGWCC 3 cut(s) 197, 213, 348
SmiMI CAYNNNNRTG 1 cut(s) 470
Sse9I AATT 4 cut(s) 86, 267, 667, 825
SsiI CCGC 5 cut(s) 366, 812, 865, 900, 907
SspDI GGCGCC 1 cut(s) 819
SspMI CTAG 4 cut(s) 210, 353, 506, 609
SstI GAGCTC 2 cut(s) 651, 770
StyD4I CCNGG 3 cut(s) 141, 215, 751
StyI CCWWGG 1 cut(s) 227
TaaI ACNGT 2 cut(s) 522, 550
TaiI ACGT 1 cut(s) 470
TaqI TCGA 3 cut(s) 619, 645, 672
TasI AATT 4 cut(s) 86, 267, 667, 825
TauI GCSGC 2 cut(s) 868, 902
TfiI GAWTC 3 cut(s) 232, 438, 462
Tru1I TTAA 6 cut(s) 173, 273, 444, 681, 723, 828
Tru9I TTAA 6 cut(s) 173, 273, 444, 681, 723, 828
TscAI CASTG 1 cut(s) 439
TseI GCWGC 2 cut(s) 566, 635
TspDTI ATGAA 2 cut(s) 141, 888
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 1 cut(s) 439
VpaK11BI GGWCC 3 cut(s) 197, 213, 348
XapI RAATTY 1 cut(s) 667
XceI RCATGY 2 cut(s) 310, 680
XmiI GTMKAC 1 cut(s) 915
XspI CTAG 4 cut(s) 210, 353, 506, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.