Rmu_sc0010256.1_g000006

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010256.1
OG0000419
Physical Location & Seq
Forward (+)
10883 .. 11647
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010256.1_g000006.1.cds

Sequence Viewer

Length: 765 bp
atggcactcaatgaagcagactggcatgaatttcatagtctgataggaagtcataattctgaagaccgagttcgtccaactctctttatcattgcagggacatatgttggaagatacttagtcaatgttcagagtgaacatcctcaagaacataagctttggcttgttgaaaatggttttgtccataatctgtggactaaaacaaatgatgatctaaaaggattgcctcccatcattgtcaacatagtcaaaaacattagaagaaatgactgcatgcttcgactgaagtttggatccactcctccagaatggatccagaaggcaaacggtgaggttgagtatatttctccatatcattatatgagaattattcaaaggaaatatcttcaacctgcttgtgttgggtataatgaccaaccaaactcaagcatcccatggatgaaggccatgaccctggaatacatcaagaagatcatctttgaagatatcaacaataccttcctggtagcaggagaaaaaactattatcactgattacgatcatcctgacgtagtcagcagtgacctgttcttatctcttaccagaaatgagatagattcgacattggcatgcttacagtggatagaaaagcttgaaagagacaaccactacaagatgtatattgatacagatgtcgaagataacgctacaactgttagaatggcccaggcagacaacagctcctttgtctttggccacaacttggagactgatgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

254

Amino Acids

29.57

Weight (kDa)

5.25

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 400
AccB7I CCANNNNNTGG 1 cut(s) 742
AclWI GGATC 4 cut(s) 288, 301, 307, 320
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 1 cut(s) 29
AcuI CTGAAG 2 cut(s) 81, 305
AfiI CCNNNNNNNGG 1 cut(s) 742
AflIII ACRYGT 1 cut(s) 759
AgsI TTSAA 5 cut(s) 170, 374, 389, 482, 635
AjnI CCWGG 3 cut(s) 453, 501, 705
AluBI AGCT 3 cut(s) 157, 631, 720
AluI AGCT 3 cut(s) 157, 631, 720
Alw26I GTCTC 2 cut(s) 633, 740
AlwI GGATC 4 cut(s) 288, 301, 307, 320
AoxI GGCC 3 cut(s) 444, 702, 733
ApoI RAATTY 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 703
AsuHPI GGTGA 1 cut(s) 341
BaeI ACNNNNGTAYC 2 cut(s) 657, 690
BalI TGGCCA 1 cut(s) 735
BamHI GGATCC 2 cut(s) 293, 312
BbsI GAAGAC 1 cut(s) 69
BccI CCATC 1 cut(s) 239
BciT130I CCWGG 3 cut(s) 455, 503, 707
BcoDI GTCTC 2 cut(s) 633, 740
BfuAI ACCTGC 1 cut(s) 400
Bme1390I CCNGG 3 cut(s) 455, 503, 707
BmgT120I GGNCC 1 cut(s) 703
BmiI GGNNCC 2 cut(s) 295, 314
BmrFI CCNGG 3 cut(s) 455, 503, 707
BmsI GCATC 1 cut(s) 438
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 288
BpuEI CTTGAG 2 cut(s) 129, 409
BsaBI GATNNNNATC 1 cut(s) 537
BsaJI CCNNGG 3 cut(s) 434, 453, 705
BsaXI ACNNNNNCTCC 2 cut(s) 704, 734
Bsc4I CCNNNNNNNGG 1 cut(s) 742
Bse1I ACTGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 3 cut(s) 455, 503, 707
BseDI CCNNGG 3 cut(s) 434, 453, 705
BseGI GGATG 4 cut(s) 139, 429, 444, 541
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 1 cut(s) 742
BseMI GCAATG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 291
BshFI GGCC 3 cut(s) 446, 704, 735
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 742
BsmAI GTCTC 2 cut(s) 633, 740
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 3 cut(s) 446, 704, 735
Bsp143I GATC 5 cut(s) 211, 293, 312, 471, 538
Bsp19I CCATGG 1 cut(s) 434
BspANI GGCC 3 cut(s) 446, 704, 735
BspLI GGNNCC 2 cut(s) 295, 314
BspMI ACCTGC 1 cut(s) 400
BspPI GGATC 4 cut(s) 288, 301, 307, 320
BsrDI GCAATG 1 cut(s) 90
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 3 cut(s) 434, 453, 705
BssMI GATC 5 cut(s) 211, 293, 312, 471, 538
BssT1I CCWWGG 1 cut(s) 434
Bst2UI CCWGG 3 cut(s) 455, 503, 707
Bst4CI ACNGT 3 cut(s) 329, 618, 694
BstC8I GCNNGC 2 cut(s) 275, 610
BstDEI CTNAG 1 cut(s) 118
BstDSI CCRYGG 1 cut(s) 434
BstF5I GGATG 4 cut(s) 139, 429, 444, 541
BstKTI GATC 5 cut(s) 214, 296, 315, 474, 541
BstMAI GTCTC 2 cut(s) 633, 740
BstMBI GATC 5 cut(s) 211, 293, 312, 471, 538
BstNI CCWGG 3 cut(s) 455, 503, 707
BstNSI RCATGY 3 cut(s) 277, 612, 763
BstSCI CCNGG 3 cut(s) 453, 501, 705
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 2 cut(s) 293, 312
BstXI CCANNNNNNTGG 1 cut(s) 454
BstYI RGATCY 2 cut(s) 293, 312
BsuRI GGCC 3 cut(s) 446, 704, 735
BtgI CCRYGG 1 cut(s) 434
BtsCI GGATG 4 cut(s) 139, 429, 444, 541
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 3 cut(s) 528, 565, 623
BveI ACCTGC 1 cut(s) 400
Cac8I GCNNGC 2 cut(s) 275, 610
Cfr13I GGNCC 1 cut(s) 703
CviAII CATG 6 cut(s) 26, 274, 435, 448, 609, 760
CviJI RGCY 7 cut(s) 157, 163, 446, 631, 704, 720, 735
CviKI_1 RGCY 7 cut(s) 157, 163, 446, 631, 704, 720, 735
DdeI CTNAG 1 cut(s) 118
DpnI GATC 5 cut(s) 213, 295, 314, 473, 540
DpnII GATC 5 cut(s) 211, 293, 312, 471, 538
EaeI YGGCCR 1 cut(s) 733
Eco130I CCWWGG 1 cut(s) 434
Eco32I GATATC 1 cut(s) 487
Eco57I CTGAAG 2 cut(s) 81, 305
EcoRII CCWGG 3 cut(s) 453, 501, 705
EcoRV GATATC 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 434
FaeI CATG 6 cut(s) 29, 277, 438, 451, 612, 763
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 1 cut(s) 112
FatI CATG 6 cut(s) 25, 273, 434, 447, 608, 759
FauNDI CATATG 1 cut(s) 103
FokI GGATG 4 cut(s) 126, 416, 451, 528
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 3 cut(s) 446, 704, 735
Hin1II CATG 6 cut(s) 29, 277, 438, 451, 612, 763
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 2 cut(s) 155, 629
HinfI GANTC 1 cut(s) 596
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 3 cut(s) 137, 195, 241
Hpy188I TCNGA 3 cut(s) 42, 61, 132
Hpy188III TCNNGA 5 cut(s) 146, 305, 316, 466, 545
Hpy8I GTNNAC 3 cut(s) 137, 195, 241
HpyAV CCTTC 3 cut(s) 313, 436, 508
HpyCH4III ACNGT 3 cut(s) 329, 618, 694
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 2 cut(s) 95, 273
HpyF3I CTNAG 1 cut(s) 118
HpySE526I ACGT 1 cut(s) 549
Hsp92II CATG 6 cut(s) 29, 277, 438, 451, 612, 763
Kzo9I GATC 5 cut(s) 211, 293, 312, 471, 538
LmnI GCTCC 1 cut(s) 725
LweI GCATC 1 cut(s) 438
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 1 cut(s) 560
MalI GATC 5 cut(s) 213, 295, 314, 473, 540
MboI GATC 5 cut(s) 211, 293, 312, 471, 538
MboII GAAGA 7 cut(s) 74, 123, 273, 377, 481, 494, 689
MflI RGATCY 2 cut(s) 293, 312
MlsI TGGCCA 1 cut(s) 735
MluCI AATT 3 cut(s) 29, 55, 366
MluNI TGGCCA 1 cut(s) 735
MmeI TCCRAC 2 cut(s) 88, 101
MnlI CCTC 4 cut(s) 153, 237, 312, 325
Mox20I TGGCCA 1 cut(s) 735
MscI TGGCCA 1 cut(s) 735
MslI CAYNNNNRTG 1 cut(s) 607
Msp20I TGGCCA 1 cut(s) 735
MspR9I CCNGG 3 cut(s) 455, 503, 707
MvaI CCWGG 3 cut(s) 455, 503, 707
NcoI CCATGG 1 cut(s) 434
NdeI CATATG 1 cut(s) 103
NdeII GATC 5 cut(s) 211, 293, 312, 471, 538
NlaIII CATG 6 cut(s) 29, 277, 438, 451, 612, 763
NlaIV GGNNCC 2 cut(s) 295, 314
NmuCI GTSAC 1 cut(s) 560
NspI RCATGY 3 cut(s) 277, 612, 763
PaeI GCATGC 2 cut(s) 277, 612
PciI ACATGT 1 cut(s) 759
PfeI GAWTC 1 cut(s) 596
PflFI GACNNNGTC 1 cut(s) 551
PflMI CCANNNNNTGG 1 cut(s) 742
PscI ACATGT 1 cut(s) 759
Psp6I CCWGG 3 cut(s) 453, 501, 705
PspGI CCWGG 3 cut(s) 453, 501, 705
PspN4I GGNNCC 2 cut(s) 295, 314
PspPI GGNCC 1 cut(s) 703
PsuI RGATCY 2 cut(s) 293, 312
PsyI GACNNNGTC 1 cut(s) 551
RseI CAYNNNNRTG 1 cut(s) 607
Sau3AI GATC 5 cut(s) 211, 293, 312, 471, 538
Sau96I GGNCC 1 cut(s) 703
ScrFI CCNGG 3 cut(s) 455, 503, 707
SetI ASST 8 cut(s) 159, 336, 394, 500, 552, 567, 633, 722
SfaNI GCATC 1 cut(s) 438
SmiMI CAYNNNNRTG 1 cut(s) 607
SmlI CTYRAG 2 cut(s) 144, 424
SmoI CTYRAG 2 cut(s) 144, 424
SphI GCATGC 2 cut(s) 277, 612
Sse9I AATT 3 cut(s) 29, 55, 366
StyD4I CCNGG 3 cut(s) 453, 501, 705
StyI CCWWGG 1 cut(s) 434
TaaI ACNGT 3 cut(s) 329, 618, 694
TaiI ACGT 1 cut(s) 552
TaqI TCGA 3 cut(s) 280, 599, 675
TaqII GACCGA 1 cut(s) 81
TasI AATT 3 cut(s) 29, 55, 366
TfiI GAWTC 1 cut(s) 596
TscAI CASTG 3 cut(s) 535, 565, 623
TseFI GTSAC 1 cut(s) 560
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 4 cut(s) 23, 27, 42, 455
TspRI CASTG 3 cut(s) 535, 565, 623
Tth111I GACNNNGTC 1 cut(s) 551
Van91I CCANNNNNTGG 1 cut(s) 742
XapI RAATTY 1 cut(s) 29
XceI RCATGY 3 cut(s) 277, 612, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.