Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003749.1

Orthogroup ID

OG0000419

Physical Location & Seq

Genomic Coordinates Reverse (-)

81343 .. 87657

Gene Structure 6315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003749.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2823 bp

atgggttggcgtttctgtacctccctccatctccgatggagcaaaattccggccctggtgtcgcagctggcgtgtacggtcgaggctgtaccctccttttttccttttatctccaagacgttgacatccaccatccgagttgagtcgacgaccctctctcttcctttgattactacgaacaggggatcgagtttgtcctcggttcgccgctctggaatggtggctgcaggtgaatggagagtttgggatcctgggctcctgccagtgtcatggaggtctggtatgggccttaggccgagtggtggattggatgttgtaccaacaacatctccgaaactgttgcgatcggatcgtgttctatcggtccactgttggcagcaggtgtggtggtgttctctgtctgatctgcgaatttggaaggactggtggattcgcctctatgagatggcgatggagagaacttgtggggaggatgttgctcttcctgaggctagttcacataaggtctgctggtcttctcgaaaagtggacgccgacgctaggctggagagtcggtgtggtgccggttggagtgacaatgtggtgttggtgcggcggcgtcggcaagcacaaaagaatgaggaaggacgagcccaacgccgtcgactcgtcctccaacaacggcgcagtggcgacgcagcctcagtcgtcctgccgcgccgagtccactcgccacgagttgactcggtccaggcccacgcgcacgactccgtcaagacgctccacgagcgcatagaggcgatcacccgcattccggcgacggagcagaggctcatttaccgaggcaagcagcttcagtgggaacagtccctggcccagtgctcaatccaaaacgacgccagcttgcagctcgtcggccgcctccggagcactcaccatcctcgggcctggcaggtcctggaggacttggtctcggtttcttttcggctctgccgcagcgaaaaggtgcacgagccattgaagtacatcaagagccgccttagccagtacttggcaatggctcagaaggagaagacggaggactctggagctagccatatgcaggtgtttataccctcctcggcgccattgtcattgttcatgctctacaattcgcctgttgaaggtaacaaagacattgcagaagagtcgattaagtatttcctgaattcatatgctacattgttgcccaaaaacttgcataatcactgcgcaccgatagtgttagagttctgtaagtttctgagaagggtagggcaggaggaccctctgtacatcttgtgcaggagcgctctaggttcgttttgggagaatgctgggggtttgcaggactcagagtgtgttgatcagttggttaggttgaaggagatttacccgtttctcactgaggtggcaaatagtttgtctaaggatttggagctgagtatggagtcgcctgggagtcttaggccgttgttggatgatgtgcgtgattttaaggcattcttgctccccatgcgtactgcaattgccaaagaagtgtattatatgggtcccatttgtgcatcctcgaaaacacaggctgctaagtacccggtgtttggggaagagattgagcttcttcgtagtatacttgctgatttgctgaaaagaatggctgagtgccttaccaaagtggtagggtgcttggctgggaaaggaaagagggacagtgatattgttcattctggatggtctcagtatcttgctgttttgaaggaactaaatgggatttgtaaactctatcagggtggggaagaacaattttggatgactctgaggcttagaaagactgcaatatgtgcactagttgtgaaatatgcaaagcgaagtgatgatcatcagtggcttcttgagcacaaagatgtacttgatttcgagtctcgaaggcatttggctatgatgatgttccctgatgttaaagaagactatgaggagttacatgagatgctgattgataggtctcagttattgtcagaatcatttgcatacataggaagtgcagaacctgagtcactgcatgctggattatttatggaatttaaaaatgaggaagctacaggtccaggtgtactgcgggaatggttctttttggtatgccaggacatatttaatccacagaatgcactttttgtggcatgccctaatgaccggagacgattctatcctaatccagagaaacagaaatatatgcaaccacaccctcaacggcgatccaaactctccctcatcaccccctccgaaatcgccaccgaattctcccaccacgaccccaacttcgctcggatcaacaactgcagcttcgggtcctgccccgactccatcatccagcctcctagagtccaagtagcagcgtttgcaaggggtgcactggagccaaacgatgtcggagccgatgtcgaggaccatgtagaggtaattagggggagtgccgacgccgacgcggttgagggagaggtgagggaggtgaagcggagggcgtcgcggtggaggcagaggtggaagagctgggagatggtttggttggaggagagggcatcgaggtggtggagttggagggagatggaatctgggtcgggttcggaggtggcggagaaggattcgggttgggggagagtaggggcggaggggaacggggagaggaggagggtctggtggtcaagggcgacggggaaggagaggagaagagtgaaggtgatggaaaagaagagatggatgacggctctgaagcccagacgtcagagacgaccaccaccgacgatcaccaccgcctctgcctccctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 ko04120 ko04144 ko04530 ko05169 map04011 map04120 map04144 map04530 map05169

Pfam Domains

Protein Families

HECT ubiquitin

Protein Analysis

940

Amino Acids

107.59

Weight (kDa)

9.11

Isoelectric Point (pI)

62.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata	RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora	Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii	Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa	Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha	Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	218, 370, 1072
AatII	GACGTC	1 cut(s)	2776
Acc16I	TGCGCA	1 cut(s)	1231
Acc36I	ACCTGC	4 cut(s)	218, 370, 922, 1072
AccB1I	GGYRCC	2 cut(s)	560, 1102
AccB7I	CCANNNNNTGG	1 cut(s)	1030
AccBSI	CCGCTC	1 cut(s)	210
AccI	GTMKAC	3 cut(s)	146, 643, 1627
AccII	CGCG	4 cut(s)	697, 740, 2480, 2521
AccIII	TCCGGA	1 cut(s)	903
AclWI	GGATC	6 cut(s)	193, 242, 255, 357, 2244, 2330
AcoI	YGGCCR	1 cut(s)	895
AcsI	RAATTY	5 cut(s)	45, 411, 1186, 2075, 2291
AcuI	CTGAAG	2 cut(s)	818, 2783
AcyI	GRCGYC	7 cut(s)	531, 598, 876, 1103, 2472, 2516, 2773
AfeI	AGCGCT	1 cut(s)	1309
AfiI	CCNNNNNNNGG	9 cut(s)	302, 540, 793, 922, 1030, 1081, 1142, 1598, 2449
AgsI	TTSAA	4 cut(s)	1000, 1142, 1381, 1753
AhlI	ACTAGT	1 cut(s)	1843
AjnI	CCWGG	9 cut(s)	54, 250, 729, 849, 926, 936, 1453, 2101, 2136
AleI	CACNNNNGTG	1 cut(s)	1406
Alw21I	GWGCWC	6 cut(s)	863, 911, 990, 1843, 1896, 2407
Alw26I	GTCTC	6 cut(s)	955, 1737, 1923, 2004, 2185, 2773
Alw44I	GTGCAC	3 cut(s)	986, 1839, 2403
AlwI	GGATC	6 cut(s)	193, 242, 255, 357, 2244, 2330
AlwNI	CAGNNNCTG	3 cut(s)	850, 937, 2045
Ama87I	CYCGRG	1 cut(s)	921
Aor13HI	TCCGGA	1 cut(s)	903
Aor51HI	AGCGCT	1 cut(s)	1309
AoxI	GGCC	8 cut(s)	51, 286, 293, 732, 852, 895, 924, 1466
ApaLI	GTGCAC	3 cut(s)	986, 1839, 2403
ApoI	RAATTY	5 cut(s)	45, 411, 1186, 2075, 2291
ArsI	GACNNNNNNTTYG	4 cut(s)	1406, 1438, 2297, 2329
AspLEI	GCGC	7 cut(s)	666, 699, 742, 771, 1105, 1232, 1310
AsuC2I	CCSGG	1 cut(s)	1592
AsuHPI	GGTGA	8 cut(s)	242, 775, 905, 2260, 2506, 2515, 2743, 2791
AsuNHI	GCTAGC	1 cut(s)	1070
AvaI	CYCGRG	1 cut(s)	921
AvaII	GGWCC	8 cut(s)	364, 727, 934, 1282, 1550, 2099, 2343, 2440
AxyI	CCTNAGG	2 cut(s)	290, 486
BaeGI	GKGCMC	3 cut(s)	990, 1843, 2407
BamHI	GGATCC	1 cut(s)	247
BanI	GGYRCC	2 cut(s)	560, 1102
BanII	GRGCYC	2 cut(s)	258, 634
BarI	GAAGNNNNNNTAC	2 cut(s)	1373, 1405
BauI	CACGAG	3 cut(s)	714, 764, 989
BbsI	GAAGAC	3 cut(s)	507, 1058, 1968
Bbv12I	GWGCWC	6 cut(s)	863, 911, 990, 1843, 1896, 2407
BceAI	ACGGC	5 cut(s)	624, 677, 1453, 2261, 2772
BcgI	CGANNNNNNTGC	4 cut(s)	322, 356, 1149, 1183
BciT130I	CCWGG	9 cut(s)	56, 252, 731, 851, 928, 938, 1455, 2103, 2138
BclI	TGATCA	2 cut(s)	1363, 1873
BcnI	CCSGG	1 cut(s)	1592
BcoDI	GTCTC	6 cut(s)	955, 1737, 1923, 2004, 2185, 2773
BcuI	ACTAGT	1 cut(s)	1843
BfaI	CTAG	6 cut(s)	492, 540, 1071, 1313, 1844, 2373
BfmI	CTRYAG	3 cut(s)	225, 2094, 2332
BfoI	RGCGCY	2 cut(s)	1106, 1311
BfuAI	ACCTGC	4 cut(s)	218, 370, 922, 1072
BmcAI	AGTACT	1 cut(s)	1028
Bme18I	GGWCC	8 cut(s)	364, 727, 934, 1282, 1550, 2099, 2343, 2440
BmeT110I	CYCGRG	1 cut(s)	921
BmrI	ACTGGG	1 cut(s)	850
BmsI	GCATC	3 cut(s)	1571, 1974, 2582
BmtI	GCTAGC	1 cut(s)	1074
BmuI	ACTGGG	1 cut(s)	850
BpiI	GAAGAC	3 cut(s)	507, 1058, 1968
BpmI	CTGGAG	4 cut(s)	566, 959, 1086, 2429
Bpu10I	CCTNAGC	1 cut(s)	1019
BpuEI	CTTGAG	1 cut(s)	1910
BpuMI	CCSGG	1 cut(s)	1592
BsaBI	GATNNNNATC	1 cut(s)	1875
BsaHI	GRCGYC	7 cut(s)	531, 598, 876, 1103, 2472, 2516, 2773
BsaI	GGTCTC	3 cut(s)	955, 1737, 2004
BsaJI	CCNNGG	8 cut(s)	54, 198, 251, 820, 849, 920, 1098, 1454
BsaWI	WCCGGW	2 cut(s)	903, 2187
Bsc4I	CCNNNNNNNGG	9 cut(s)	302, 540, 793, 922, 1030, 1081, 1142, 1598, 2449
Bse118I	RCCGGY	1 cut(s)	563
Bse1I	ACTGG	5 cut(s)	263, 428, 856, 1024, 2412
Bse21I	CCTNAGG	2 cut(s)	290, 486
Bse3DI	GCAATG	2 cut(s)	1041, 1155
Bse8I	GATNNNNATC	1 cut(s)	1875
BseAI	TCCGGA	1 cut(s)	903
BseBI	CCWGG	9 cut(s)	56, 252, 731, 851, 928, 938, 1455, 2103, 2138
BseDI	CCNNGG	8 cut(s)	54, 198, 251, 820, 849, 920, 1098, 1454
BseJI	GATNNNNATC	1 cut(s)	1875
BseLI	CCNNNNNNNGG	9 cut(s)	302, 540, 793, 922, 1030, 1081, 1142, 1598, 2449
BseMI	GCAATG	2 cut(s)	1041, 1155
BseNI	ACTGG	5 cut(s)	263, 428, 856, 1024, 2412
BseRI	GAGGAG	6 cut(s)	1087, 1985, 2579, 2692, 2695, 2731
BseSI	GKGCMC	3 cut(s)	990, 1843, 2407
BseX3I	CGGCCG	1 cut(s)	895
BseYI	CCCAGC	3 cut(s)	1334, 1688, 2544
BsgI	GTGCAG	2 cut(s)	1321, 2058
Bsh1236I	CGCG	4 cut(s)	697, 740, 2480, 2521
Bsh1285I	CGRYCG	3 cut(s)	81, 347, 898
BshFI	GGCC	8 cut(s)	53, 288, 295, 734, 854, 897, 926, 1468
BshNI	GGYRCC	2 cut(s)	560, 1102
BsiEI	CGRYCG	3 cut(s)	81, 347, 898
BsiHKAI	GWGCWC	6 cut(s)	863, 911, 990, 1843, 1896, 2407
BsiHKCI	CYCGRG	1 cut(s)	921
BsiSI	CCGG	6 cut(s)	50, 564, 794, 904, 1592, 2188
BslFI	GGGAC	3 cut(s)	832, 1536, 1718
BslI	CCNNNNNNNGG	9 cut(s)	302, 540, 793, 922, 1030, 1081, 1142, 1598, 2449
BsmAI	GTCTC	6 cut(s)	955, 1737, 1923, 2004, 2185, 2773
BsmBI	CGTCTC	2 cut(s)	2185, 2773
BsmFI	GGGAC	3 cut(s)	832, 1536, 1718
BsmI	GAATGC	4 cut(s)	789, 1336, 1499, 2164
BsnI	GGCC	8 cut(s)	53, 288, 295, 734, 854, 897, 926, 1468
Bso31I	GGTCTC	3 cut(s)	955, 1737, 2004
BsoBI	CYCGRG	1 cut(s)	921
Bsp1286I	GDGCHC	8 cut(s)	258, 634, 863, 911, 990, 1843, 1896, 2407
Bsp13I	TCCGGA	1 cut(s)	903
Bsp1407I	TGTACA	1 cut(s)	1290
BspANI	GGCC	8 cut(s)	53, 288, 295, 734, 854, 897, 926, 1468
BspEI	TCCGGA	1 cut(s)	903
BspFNI	CGCG	4 cut(s)	697, 740, 2480, 2521
BspMAI	CTGCAG	2 cut(s)	229, 2336
BspMI	ACCTGC	4 cut(s)	218, 370, 922, 1072
BspOI	GCTAGC	1 cut(s)	1074
BspPI	GGATC	6 cut(s)	193, 242, 255, 357, 2244, 2330
BspQI	GCTCTTC	2 cut(s)	486, 2534
BspT107I	GGYRCC	2 cut(s)	560, 1102
BspTNI	GGTCTC	3 cut(s)	955, 1737, 2004
BsrBI	CCGCTC	1 cut(s)	210
BsrDI	GCAATG	2 cut(s)	1041, 1155
BsrFI	RCCGGY	1 cut(s)	563
BsrGI	TGTACA	1 cut(s)	1290
BsrI	ACTGG	5 cut(s)	263, 428, 856, 1024, 2412
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	8 cut(s)	54, 198, 251, 820, 849, 920, 1098, 1454
BssNAI	GTATAC	1 cut(s)	1628
BssNI	GRCGYC	7 cut(s)	531, 598, 876, 1103, 2472, 2516, 2773
BssSI	CACGAG	3 cut(s)	714, 764, 989
Bst1107I	GTATAC	1 cut(s)	1628
Bst2BI	CACGAG	3 cut(s)	714, 764, 989
Bst2UI	CCWGG	9 cut(s)	56, 252, 731, 851, 928, 938, 1455, 2103, 2138
Bst4CI	ACNGT	5 cut(s)	79, 339, 371, 846, 1709
Bst6I	CTCTTC	7 cut(s)	165, 486, 1158, 1599, 2534, 2716, 2738
BstACI	GRCGYC	7 cut(s)	531, 598, 876, 1103, 2472, 2516, 2773
BstAPI	GCANNNNNTGC	3 cut(s)	1838, 2393, 2402
BstAUI	TGTACA	1 cut(s)	1290
BstC8I	GCNNGC	8 cut(s)	69, 606, 827, 880, 884, 1072, 2058, 2176
BstENI	CCTNNNNNAGG	1 cut(s)	1140
BstFNI	CGCG	4 cut(s)	697, 740, 2480, 2521
BstH2I	RGCGCY	2 cut(s)	1106, 1311
BstHHI	GCGC	7 cut(s)	666, 699, 742, 771, 1105, 1232, 1310
BstMAI	GTCTC	6 cut(s)	955, 1737, 1923, 2004, 2185, 2773
BstMCI	CGRYCG	3 cut(s)	81, 347, 898
BstNI	CCWGG	9 cut(s)	56, 252, 731, 851, 928, 938, 1455, 2103, 2138
BstNSI	RCATGY	2 cut(s)	2060, 2178
BstSFI	CTRYAG	3 cut(s)	225, 2094, 2332
BstSLI	GKGCMC	3 cut(s)	990, 1843, 2407
BstUI	CGCG	4 cut(s)	697, 740, 2480, 2521
BstV2I	GAAGAC	3 cut(s)	507, 1058, 1968
BstX2I	RGATCY	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	247
BstZ17I	GTATAC	1 cut(s)	1628
BstZI	CGGCCG	1 cut(s)	895
Bsu36I	CCTNAGG	2 cut(s)	290, 486
BsuRI	GGCC	8 cut(s)	53, 288, 295, 734, 854, 897, 926, 1468
BtgZI	GCGATG	1 cut(s)	464
BtsI	GCAGTG	3 cut(s)	673, 1225, 2051
BveI	ACCTGC	4 cut(s)	218, 370, 922, 1072
Cac8I	GCNNGC	8 cut(s)	69, 606, 827, 880, 884, 1072, 2058, 2176
CaiI	CAGNNNCTG	3 cut(s)	850, 937, 2045
CfoI	GCGC	7 cut(s)	666, 699, 742, 771, 1105, 1232, 1310
Cfr10I	RCCGGY	1 cut(s)	563
CseI	GACGC	9 cut(s)	539, 545, 587, 683, 766, 884, 2480, 2486, 2505
CviAII	CATG	7 cut(s)	270, 1120, 1513, 1979, 2057, 2175, 2444
DinI	GGCGCC	1 cut(s)	1104
DraI	TTTAAA	1 cut(s)	2080
EaeI	YGGCCR	1 cut(s)	895
EagI	CGGCCG	1 cut(s)	895
Eam1104I	CTCTTC	7 cut(s)	165, 486, 1158, 1599, 2534, 2716, 2738
EarI	CTCTTC	7 cut(s)	165, 486, 1158, 1599, 2534, 2716, 2738
EciI	GGCGGA	2 cut(s)	2642, 2675
EclXI	CGGCCG	1 cut(s)	895
Eco24I	GRGCYC	2 cut(s)	258, 634
Eco31I	GGTCTC	3 cut(s)	955, 1737, 2004
Eco47I	GGWCC	8 cut(s)	364, 727, 934, 1282, 1550, 2099, 2343, 2440
Eco47III	AGCGCT	1 cut(s)	1309
Eco52I	CGGCCG	1 cut(s)	895
Eco57I	CTGAAG	2 cut(s)	818, 2783
Eco81I	CCTNAGG	2 cut(s)	290, 486
Eco88I	CYCGRG	1 cut(s)	921
EcoNI	CCTNNNNNAGG	1 cut(s)	1140
EcoO109I	RGGNCCY	4 cut(s)	934, 1282, 1550, 2343
EcoRI	GAATTC	2 cut(s)	1186, 2291
EcoRII	CCWGG	9 cut(s)	54, 250, 729, 849, 926, 936, 1453, 2101, 2136
EcoT38I	GRGCYC	2 cut(s)	258, 634
EgeI	GGCGCC	1 cut(s)	1104
EheI	GGCGCC	1 cut(s)	1104
Esp3I	CGTCTC	2 cut(s)	2185, 2773
FaeI	CATG	7 cut(s)	273, 1123, 1516, 1982, 2060, 2178, 2447
FalI	AAGNNNNNCTT	4 cut(s)	1487, 1519, 1890, 1922
FaqI	GGGAC	3 cut(s)	832, 1536, 1718
FatI	CATG	7 cut(s)	269, 1119, 1512, 1978, 2056, 2174, 2443
FauI	CCCGC	2 cut(s)	794, 2106
FauNDI	CATATG	2 cut(s)	1077, 1192
FbaI	TGATCA	2 cut(s)	1363, 1873
FblI	GTMKAC	3 cut(s)	146, 643, 1627
FriOI	GRGCYC	2 cut(s)	258, 634
FspBI	CTAG	6 cut(s)	492, 540, 1071, 1313, 1844, 2373
FspI	TGCGCA	1 cut(s)	1231
GlaI	GCGC	7 cut(s)	665, 698, 741, 770, 1104, 1231, 1309
GsaI	CCCAGC	3 cut(s)	1338, 1692, 2548
GsuI	CTGGAG	4 cut(s)	566, 959, 1086, 2429
HaeII	RGCGCY	2 cut(s)	1106, 1311
HaeIII	GGCC	8 cut(s)	53, 288, 295, 734, 854, 897, 926, 1468
HapII	CCGG	6 cut(s)	50, 564, 794, 904, 1592, 2188
HgaI	GACGC	9 cut(s)	539, 545, 587, 683, 766, 884, 2480, 2486, 2505
HhaI	GCGC	7 cut(s)	666, 699, 742, 771, 1105, 1232, 1310
Hin1I	GRCGYC	7 cut(s)	531, 598, 876, 1103, 2472, 2516, 2773
Hin1II	CATG	7 cut(s)	273, 1123, 1516, 1982, 2060, 2178, 2447
Hin6I	GCGC	7 cut(s)	664, 697, 740, 769, 1103, 1230, 1308
HinP1I	GCGC	7 cut(s)	664, 697, 740, 769, 1103, 1230, 1308
HincII	GTYRAC	4 cut(s)	123, 147, 644, 721
HindII	GTYRAC	4 cut(s)	123, 147, 644, 721
HpaII	CCGG	6 cut(s)	50, 564, 794, 904, 1592, 2188
HphI	GGTGA	8 cut(s)	242, 775, 905, 2260, 2506, 2515, 2743, 2791
HpyCH4III	ACNGT	5 cut(s)	79, 339, 371, 846, 1709
HpyCH4IV	ACGT	2 cut(s)	119, 2773
HpySE526I	ACGT	2 cut(s)	119, 2773
Hsp92I	GRCGYC	7 cut(s)	531, 598, 876, 1103, 2472, 2516, 2773
Hsp92II	CATG	7 cut(s)	273, 1123, 1516, 1982, 2060, 2178, 2447
HspAI	GCGC	7 cut(s)	664, 697, 740, 769, 1103, 1230, 1308
KasI	GGCGCC	1 cut(s)	1102
KflI	GGGWCCC	1 cut(s)	1550
Kpn2I	TCCGGA	1 cut(s)	903
Ksp22I	TGATCA	2 cut(s)	1363, 1873
LguI	GCTCTTC	2 cut(s)	486, 2534
LweI	GCATC	3 cut(s)	1571, 1974, 2582
MaeI	CTAG	6 cut(s)	492, 540, 1071, 1313, 1844, 2373
MaeII	ACGT	2 cut(s)	119, 2773
MaeIII	GTNAC	4 cut(s)	572, 1145, 1974, 2049
MbiI	CCGCTC	1 cut(s)	210
MfeI	CAATTG	1 cut(s)	1524
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	8 cut(s)	258, 634, 863, 911, 990, 1843, 1896, 2407
MluCI	AATT	9 cut(s)	45, 411, 1129, 1186, 1524, 1799, 2075, 2291, 2454
Mly113I	GGCGCC	1 cut(s)	1103
MmeI	TCCRAC	6 cut(s)	548, 679, 1455, 2404, 2541, 2570
MroI	TCCGGA	1 cut(s)	903
MseI	TTAA	5 cut(s)	1173, 1494, 1956, 2079, 2148
MslI	CAYNNNNRTG	3 cut(s)	1406, 1899, 2578
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	6 cut(s)	50, 564, 794, 904, 1592, 2188
MunI	CAATTG	1 cut(s)	1524
Mva1269I	GAATGC	4 cut(s)	789, 1336, 1499, 2164
MvaI	CCWGG	9 cut(s)	56, 252, 731, 851, 928, 938, 1455, 2103, 2138
MvnI	CGCG	4 cut(s)	697, 740, 2480, 2521
NarI	GGCGCC	1 cut(s)	1103
NciI	CCSGG	1 cut(s)	1592
NdeI	CATATG	2 cut(s)	1077, 1192
NheI	GCTAGC	1 cut(s)	1070
NlaIII	CATG	7 cut(s)	273, 1123, 1516, 1982, 2060, 2178, 2447
NmeAIII	GCCGAG	3 cut(s)	321, 725, 1079
NmuCI	GTSAC	2 cut(s)	572, 2049
NsbI	TGCGCA	1 cut(s)	1231
NspI	RCATGY	2 cut(s)	2060, 2178
OliI	CACNNNNGTG	1 cut(s)	1406
PaeI	GCATGC	2 cut(s)	2060, 2178
PaqCI	CACCTGC	3 cut(s)	218, 370, 1072
PciSI	GCTCTTC	2 cut(s)	486, 2534
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 2779
PctI	GAATGC	4 cut(s)	789, 1336, 1499, 2164
PfeI	GAWTC	5 cut(s)	430, 2015, 2196, 2603, 2636
PflFI	GACNNNGTC	3 cut(s)	725, 749, 947
PflMI	CCANNNNNTGG	1 cut(s)	1030
PfoI	TCCNGGA	1 cut(s)	936
Ple19I	CGATCG	1 cut(s)	347
PluTI	GGCGCC	1 cut(s)	1106
PpuMI	RGGWCCY	4 cut(s)	934, 1282, 1550, 2343
Psp5II	RGGWCCY	4 cut(s)	934, 1282, 1550, 2343
Psp6I	CCWGG	9 cut(s)	54, 250, 729, 849, 926, 936, 1453, 2101, 2136
PspFI	CCCAGC	3 cut(s)	1334, 1688, 2544
PspGI	CCWGG	9 cut(s)	54, 250, 729, 849, 926, 936, 1453, 2101, 2136
PspPPI	RGGWCCY	4 cut(s)	934, 1282, 1550, 2343
PstI	CTGCAG	2 cut(s)	229, 2336
PstNI	CAGNNNCTG	3 cut(s)	850, 937, 2045
PsuI	RGATCY	1 cut(s)	247
PsyI	GACNNNGTC	3 cut(s)	725, 749, 947
PvuI	CGATCG	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	67
RseI	CAYNNNNRTG	3 cut(s)	1406, 1899, 2578
SalI	GTCGAC	2 cut(s)	145, 642
SapI	GCTCTTC	2 cut(s)	486, 2534
SaqAI	TTAA	5 cut(s)	1173, 1494, 1956, 2079, 2148
ScaI	AGTACT	1 cut(s)	1028
SduI	GDGCHC	8 cut(s)	258, 634, 863, 911, 990, 1843, 1896, 2407
SfaNI	GCATC	3 cut(s)	1571, 1974, 2582
SfcI	CTRYAG	3 cut(s)	225, 2094, 2332
SfoI	GGCGCC	1 cut(s)	1104
SinI	GGWCC	8 cut(s)	364, 727, 934, 1282, 1550, 2099, 2343, 2440
SmiMI	CAYNNNNRTG	3 cut(s)	1406, 1899, 2578
SmlI	CTYRAG	1 cut(s)	1889
SmoI	CTYRAG	1 cut(s)	1889
SpeI	ACTAGT	1 cut(s)	1843
SphI	GCATGC	2 cut(s)	2060, 2178
Sse9I	AATT	9 cut(s)	45, 411, 1129, 1186, 1524, 1799, 2075, 2291, 2454
SspDI	GGCGCC	1 cut(s)	1102
SspMI	CTAG	6 cut(s)	492, 540, 1071, 1313, 1844, 2373
TaaI	ACNGT	5 cut(s)	79, 339, 371, 846, 1709
TaiI	ACGT	2 cut(s)	122, 2776
TaqII	GACCGA	2 cut(s)	352, 715
TasI	AATT	9 cut(s)	45, 411, 1129, 1186, 1524, 1799, 2075, 2291, 2454
TatI	WGTACW	5 cut(s)	1002, 1026, 1290, 1903, 2107
TauI	GCSGC	7 cut(s)	210, 595, 598, 697, 900, 975, 1017
TfiI	GAWTC	5 cut(s)	430, 2015, 2196, 2603, 2636
Tru1I	TTAA	5 cut(s)	1173, 1494, 1956, 2079, 2148
Tru9I	TTAA	5 cut(s)	1173, 1494, 1956, 2079, 2148
TseFI	GTSAC	2 cut(s)	572, 2049
Tsp45I	GTSAC	2 cut(s)	572, 2049
TspDTI	ATGAA	3 cut(s)	1108, 1179, 1709
TspGWI	ACGGA	3 cut(s)	739, 815, 1070
Tth111I	GACNNNGTC	3 cut(s)	725, 749, 947
Van91I	CCANNNNNTGG	1 cut(s)	1030
VneI	GTGCAC	3 cut(s)	986, 1839, 2403
VpaK11BI	GGWCC	8 cut(s)	364, 727, 934, 1282, 1550, 2099, 2343, 2440
XagI	CCTNNNNNAGG	1 cut(s)	1140
XapI	RAATTY	5 cut(s)	45, 411, 1186, 2075, 2291
XceI	RCATGY	2 cut(s)	2060, 2178
XmiI	GTMKAC	3 cut(s)	146, 643, 1627
XspI	CTAG	6 cut(s)	492, 540, 1071, 1313, 1844, 2373
ZraI	GACGTC	1 cut(s)	2774
ZrmI	AGTACT	1 cut(s)	1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.