Rmu_ssc0000438.1_g000049

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000438.1
OG0000419
Physical Location & Seq
Forward (+)
209312 .. 209803
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000438.1_g000049.1.cds

Sequence Viewer

Length: 492 bp
atgcttagtctgaagttcagatccactcctccagaatggattcagaaggtaaactgtgaggttgagtatatttctccatatcattatgtgagaattattcaaatgaaatatcttcagcctgcctgtgttggctacaatggccaaccaaactcaagcatccaatggatgaaagccatggctctagaatatatcaaaaagatcatctctgaagatatcaacaataccttcctagcagcaggagaaaaaactattatcactgcttacgatcatcctgacgtagtcagcagtgacctcttcctatctctcacaagaaaggagatagattcgacactggcatgcttacagtgggttgaaaagctaaaaacagacaaccactacaagatgtttgttgatacagatgtcgaagacaatgcaacaactgcccgtatggcccaggcagataacgattcgtttgtccttggttacaattcagaaacagacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

163

Amino Acids

18.75

Weight (kDa)

4.81

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 139
AcuI CTGAAG 3 cut(s) 32, 98, 228
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 2 cut(s) 101, 353
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 1 cut(s) 358
AluI AGCT 1 cut(s) 358
AlwI GGATC 1 cut(s) 15
AoxI GGCC 2 cut(s) 139, 429
ApeKI GCWGC 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 430
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BalI TGGCCA 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 245
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 1 cut(s) 434
BfaI CTAG 2 cut(s) 182, 230
BglI GCCNNNNNGGC 1 cut(s) 428
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 430
BmrFI CCNGG 1 cut(s) 434
BmsI GCATC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 136
BsaJI CCNNGG 3 cut(s) 174, 432, 457
Bse1I ACTGG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 434
BseDI CCNNGG 3 cut(s) 174, 432, 457
BseGI GGATG 3 cut(s) 156, 171, 268
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 245
BshFI GGCC 2 cut(s) 141, 431
BsnI GGCC 2 cut(s) 141, 431
Bsp143I GATC 3 cut(s) 20, 198, 265
Bsp19I CCATGG 1 cut(s) 174
BspANI GGCC 2 cut(s) 141, 431
BspPI GGATC 1 cut(s) 15
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 3 cut(s) 174, 432, 457
BssMI GATC 3 cut(s) 20, 198, 265
BssT1I CCWWGG 2 cut(s) 174, 457
Bst2UI CCWGG 1 cut(s) 434
Bst4CI ACNGT 2 cut(s) 56, 345
Bst6I CTCTTC 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 120, 337
BstDEI CTNAG 1 cut(s) 5
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 3 cut(s) 156, 171, 268
BstKTI GATC 3 cut(s) 23, 201, 268
BstMBI GATC 3 cut(s) 20, 198, 265
BstMWI GCNNNNNNNGC 3 cut(s) 138, 419, 428
BstNI CCWGG 1 cut(s) 434
BstNSI RCATGY 2 cut(s) 339, 490
BstSCI CCNGG 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 411
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 2 cut(s) 141, 431
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 3 cut(s) 156, 171, 268
BtsI GCAGTG 2 cut(s) 255, 292
BtsIMutI CAGTG 4 cut(s) 255, 292, 329, 350
Cac8I GCNNGC 2 cut(s) 120, 337
Cfr13I GGNCC 1 cut(s) 430
CviAII CATG 3 cut(s) 175, 336, 487
CviJI RGCY 7 cut(s) 118, 132, 141, 173, 179, 358, 431
CviKI_1 RGCY 7 cut(s) 118, 132, 141, 173, 179, 358, 431
DdeI CTNAG 1 cut(s) 5
DpnI GATC 3 cut(s) 22, 200, 267
DpnII GATC 3 cut(s) 20, 198, 265
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco130I CCWWGG 2 cut(s) 174, 457
Eco32I GATATC 1 cut(s) 214
Eco57I CTGAAG 3 cut(s) 32, 98, 228
EcoRII CCWGG 1 cut(s) 432
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 174, 457
ErhI CCWWGG 2 cut(s) 174, 457
FaeI CATG 3 cut(s) 178, 339, 490
FaiI YATR 8 cut(s) 69, 79, 87, 176, 189, 337, 428, 488
FatI CATG 3 cut(s) 174, 335, 486
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 3 cut(s) 143, 178, 255
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 2 cut(s) 182, 230
GluI GCNGC 1 cut(s) 234
GsuI CTGGAG 1 cut(s) 15
HaeIII GGCC 2 cut(s) 141, 431
Hin1II CATG 3 cut(s) 178, 339, 490
HinfI GANTC 3 cut(s) 40, 323, 446
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 5 cut(s) 12, 20, 45, 208, 472
Hpy188III TCNNGA 3 cut(s) 32, 182, 272
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 40, 235
HpyCH4III ACNGT 2 cut(s) 56, 345
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 419, 428
HpyF3I CTNAG 1 cut(s) 5
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 3 cut(s) 178, 339, 490
Kzo9I GATC 3 cut(s) 20, 198, 265
LpnPI CCDG 8 cut(s) 45, 132, 136, 222, 285, 317, 419, 446
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 1 cut(s) 165
MaeI CTAG 2 cut(s) 182, 230
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 287, 461
MalI GATC 3 cut(s) 22, 200, 267
MboI GATC 3 cut(s) 20, 198, 265
MboII GAAGA 4 cut(s) 104, 221, 286, 416
MflI RGATCY 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 2 cut(s) 93, 466
MluNI TGGCCA 1 cut(s) 141
MnlI CCTC 3 cut(s) 39, 52, 302
Mox20I TGGCCA 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 39
MscI TGGCCA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 334
Msp20I TGGCCA 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 434
MvaI CCWGG 1 cut(s) 434
MwoI GCNNNNNNNGC 3 cut(s) 138, 419, 428
NcoI CCATGG 1 cut(s) 174
NdeII GATC 3 cut(s) 20, 198, 265
NlaIII CATG 3 cut(s) 178, 339, 490
NmuCI GTSAC 1 cut(s) 287
NspI RCATGY 2 cut(s) 339, 490
PaeI GCATGC 1 cut(s) 339
PciI ACATGT 1 cut(s) 486
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 3 cut(s) 40, 323, 446
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 235
PscI ACATGT 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 432
PspGI CCWGG 1 cut(s) 432
PspPI GGNCC 1 cut(s) 430
PsuI RGATCY 1 cut(s) 20
PsyI GACNNNGTC 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 334
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 3 cut(s) 20, 198, 265
Sau96I GGNCC 1 cut(s) 430
ScrFI CCNGG 1 cut(s) 434
SetI ASST 6 cut(s) 51, 63, 227, 279, 294, 360
SfaNI GCATC 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
SphI GCATGC 1 cut(s) 339
Sse9I AATT 2 cut(s) 93, 466
SspMI CTAG 2 cut(s) 182, 230
StyD4I CCNGG 1 cut(s) 432
StyI CCWWGG 2 cut(s) 174, 457
TaaI ACNGT 2 cut(s) 56, 345
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 326, 402
TasI AATT 2 cut(s) 93, 466
TfiI GAWTC 3 cut(s) 40, 323, 446
TscAI CASTG 4 cut(s) 262, 292, 336, 350
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 119, 182
TspRI CASTG 4 cut(s) 262, 292, 336, 350
Tth111I GACNNNGTC 1 cut(s) 278
XbaI TCTAGA 1 cut(s) 181
XceI RCATGY 2 cut(s) 339, 490
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 2 cut(s) 182, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.