Rmu_sc0002547.1_g000017

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002547.1
OG0000419
Physical Location & Seq
Reverse (-)
79871 .. 80362
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002547.1_g000017.1.cds

Sequence Viewer

Length: 492 bp
atgcttcttctgaagttcagatccactcctgcagaatggatccagaagacaaacggtgaggttgagtatatttctccatatcattatgtgagaattattcaaaggaaatatgtgcagcctgcctgtattggttacaatggccaacctaactcaagcatcccatggatgaaagccatggctctggaatatatcaagaagatcatctctgaagacatcaacaataccttcctggcagcaggagaaaaaactattatcactgcttacgatcatactgacgtagtcagtagtgatctgttcctatttcttaccagaaaggacatagattcgacactgacatgcttacagtgggtggaaagacttgagacagaaaaccactacaaaatatatgttgatacagatgtcgaagacaatgcaacaactactcgaatggcccaggcagataacgactcatttgtccttggtcacaacttagaaacaaacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

163

Amino Acids

18.85

Weight (kDa)

4.93

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 452
AclWI GGATC 3 cut(s) 15, 34, 47
AcoI YGGCCR 1 cut(s) 139
AcuI CTGAAG 2 cut(s) 32, 228
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 1 cut(s) 101
AjnI CCWGG 2 cut(s) 228, 432
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 3 cut(s) 15, 34, 47
AoxI GGCC 2 cut(s) 139, 429
ApeKI GCWGC 2 cut(s) 115, 233
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 1 cut(s) 68
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BalI TGGCCA 1 cut(s) 141
BamHI GGATCC 1 cut(s) 39
BbsI GAAGAC 3 cut(s) 53, 216, 411
BbvI GCAGC 2 cut(s) 127, 245
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 2 cut(s) 230, 434
BcoDI GTCTC 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 2 cut(s) 116, 234
BlsI GCNGC 2 cut(s) 117, 235
Bme1390I CCNGG 2 cut(s) 230, 434
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 2 cut(s) 230, 434
BmsI GCATC 1 cut(s) 165
BpiI GAAGAC 3 cut(s) 53, 216, 411
BpuEI CTTGAG 2 cut(s) 136, 380
BsaJI CCNNGG 4 cut(s) 161, 174, 432, 457
BseBI CCWGG 2 cut(s) 230, 434
BseDI CCNNGG 4 cut(s) 161, 174, 432, 457
BseGI GGATG 2 cut(s) 156, 171
BseXI GCAGC 2 cut(s) 127, 245
BsgI GTGCAG 1 cut(s) 134
BshFI GGCC 2 cut(s) 141, 431
BsmAI GTCTC 1 cut(s) 356
BsnI GGCC 2 cut(s) 141, 431
Bsp143I GATC 5 cut(s) 20, 39, 198, 265, 289
Bsp19I CCATGG 2 cut(s) 161, 174
BspANI GGCC 2 cut(s) 141, 431
BspLI GGNNCC 1 cut(s) 41
BspMAI CTGCAG 1 cut(s) 34
BspPI GGATC 3 cut(s) 15, 34, 47
BssECI CCNNGG 4 cut(s) 161, 174, 432, 457
BssMI GATC 5 cut(s) 20, 39, 198, 265, 289
BssT1I CCWWGG 3 cut(s) 161, 174, 457
Bst2UI CCWGG 2 cut(s) 230, 434
Bst4CI ACNGT 2 cut(s) 56, 345
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 469
BstDSI CCRYGG 2 cut(s) 161, 174
BstF5I GGATG 2 cut(s) 156, 171
BstKTI GATC 5 cut(s) 23, 42, 201, 268, 292
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 5 cut(s) 20, 39, 198, 265, 289
BstNI CCWGG 2 cut(s) 230, 434
BstNSI RCATGY 2 cut(s) 339, 490
BstSCI CCNGG 2 cut(s) 228, 432
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 127, 245
BstV2I GAAGAC 3 cut(s) 53, 216, 411
BstX2I RGATCY 2 cut(s) 20, 39
BstXI CCANNNNNNTGG 1 cut(s) 181
BstYI RGATCY 2 cut(s) 20, 39
BsuRI GGCC 2 cut(s) 141, 431
BtgI CCRYGG 2 cut(s) 161, 174
BtsCI GGATG 2 cut(s) 156, 171
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 3 cut(s) 255, 329, 350
Cac8I GCNNGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 430
CviAII CATG 4 cut(s) 162, 175, 336, 487
CviJI RGCY 5 cut(s) 118, 141, 173, 179, 431
CviKI_1 RGCY 5 cut(s) 118, 141, 173, 179, 431
DdeI CTNAG 1 cut(s) 469
DpnI GATC 5 cut(s) 22, 41, 200, 267, 291
DpnII GATC 5 cut(s) 20, 39, 198, 265, 289
DrdI GACNNNNNNGTC 1 cut(s) 452
DseDI GACNNNNNNGTC 1 cut(s) 452
EaeI YGGCCR 1 cut(s) 139
Eco130I CCWWGG 3 cut(s) 161, 174, 457
Eco57I CTGAAG 2 cut(s) 32, 228
EcoRII CCWGG 2 cut(s) 228, 432
EcoT14I CCWWGG 3 cut(s) 161, 174, 457
ErhI CCWWGG 3 cut(s) 161, 174, 457
FaeI CATG 4 cut(s) 165, 178, 339, 490
FatI CATG 4 cut(s) 161, 174, 335, 486
Fnu4HI GCNGC 2 cut(s) 116, 234
FokI GGATG 2 cut(s) 143, 178
Fsp4HI GCNGC 2 cut(s) 116, 234
GluI GCNGC 2 cut(s) 116, 234
HaeIII GGCC 2 cut(s) 141, 431
Hin1II CATG 4 cut(s) 165, 178, 339, 490
HinfI GANTC 2 cut(s) 323, 446
HphI GGTGA 1 cut(s) 68
Hpy188I TCNGA 3 cut(s) 12, 20, 208
Hpy188III TCNNGA 3 cut(s) 43, 182, 193
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 2 cut(s) 56, 345
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 32, 115, 413
HpyF3I CTNAG 1 cut(s) 469
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 4 cut(s) 165, 178, 339, 490
Kzo9I GATC 5 cut(s) 20, 39, 198, 265, 289
Lsp1109I GCAGC 2 cut(s) 127, 245
LweI GCATC 1 cut(s) 165
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 131, 461
MalI GATC 5 cut(s) 22, 41, 200, 267, 291
MboI GATC 5 cut(s) 20, 39, 198, 265, 289
MboII GAAGA 4 cut(s) 58, 208, 221, 416
MflI RGATCY 2 cut(s) 20, 39
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 1 cut(s) 93
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 1 cut(s) 440
MnlI CCTC 1 cut(s) 52
Mox20I TGGCCA 1 cut(s) 141
MscI TGGCCA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 334
Msp20I TGGCCA 1 cut(s) 141
MspR9I CCNGG 2 cut(s) 230, 434
MvaI CCWGG 2 cut(s) 230, 434
NcoI CCATGG 2 cut(s) 161, 174
NdeII GATC 5 cut(s) 20, 39, 198, 265, 289
NlaIII CATG 4 cut(s) 165, 178, 339, 490
NlaIV GGNNCC 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 461
NspI RCATGY 2 cut(s) 339, 490
PciI ACATGT 1 cut(s) 486
PfeI GAWTC 1 cut(s) 323
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 117, 235
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
PscI ACATGT 1 cut(s) 486
Psp6I CCWGG 2 cut(s) 228, 432
PspGI CCWGG 2 cut(s) 228, 432
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 430
PstI CTGCAG 1 cut(s) 34
PsuI RGATCY 2 cut(s) 20, 39
PsyI GACNNNGTC 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 334
SatI GCNGC 2 cut(s) 116, 234
Sau3AI GATC 5 cut(s) 20, 39, 198, 265, 289
Sau96I GGNCC 1 cut(s) 430
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 2 cut(s) 230, 434
SetI ASST 4 cut(s) 63, 148, 227, 279
SfaNI GCATC 1 cut(s) 165
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 334
SmlI CTYRAG 2 cut(s) 151, 359
SmoI CTYRAG 2 cut(s) 151, 359
Sse9I AATT 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 228, 432
StyI CCWWGG 3 cut(s) 161, 174, 457
TaaI ACNGT 2 cut(s) 56, 345
TaiI ACGT 1 cut(s) 279
TaqI TCGA 3 cut(s) 326, 402, 424
TasI AATT 1 cut(s) 93
TfiI GAWTC 1 cut(s) 323
TscAI CASTG 3 cut(s) 262, 336, 350
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 2 cut(s) 115, 233
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 3 cut(s) 262, 336, 350
Tth111I GACNNNGTC 1 cut(s) 278
XceI RCATGY 2 cut(s) 339, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.