RchiOBHm_Chr3g0452751

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000419
Physical Location & Seq
Forward (+)
3308268 .. 3309603
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41988

Sequence Viewer

Length: 702 bp
ATGCGTGCTGCAACTAGCATCAGTTCAACACTTCTTCTTCTGCAATTCTACTTCATAAGTTCATATCTTCTTCTTCTTCTTCTTTTTTTTCCTTTTTTCTTCCTTCCCAATCCCCATTATGCAGTTCTCTATTTACCAATTAGTAGACAATTACCATATATTCATCAAATCAACATCTTGCATCTAGGAAGCATGAGCTCTGTGTTGGATCTAGAATTCCTTCTGGCCAAAAAAATTCTGGGTTTCTTCTTTTCATATAGGTTCTGGGTTTCTTCTGAAATTCTGCTTTCCAACAAAAGCCCAAATTTGATTTCTTTGTTTCACATGGTTTATGGGTGTTTACTGAAATTCTGCTTCTCATATGTGGAGACTGGGGACTCCGGTATTGCTTTGGTTGCTTCAGGAGCCACTGCAAATTTGAGTATAGAGGAGGAGGAGGAGGAGCTGGCTTGGGAGGAGAGTTTCGAGAGGTTGAGATGGTTTCGAGAGGCTGAGATGGAGGGGAAAGGTTTAGGAGGAGGAGGAGCTGGCTTGGTAGGAGATGGTTTCGCTGAGATGGAGGAGAAATTGGGTCGGGTCGGGCTTTCGGTCTCCGAATATTTAAAGCCCGAGACAGAACCGAAAATACACATTCGGGTCGGGCTTTGCATCGAACCGAGATTTTCCATACTAAAACCGAACCGAATCGGGCTTTTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.4

Weight (kDa)

5.44

Isoelectric Point (pI)

56.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 145
AclWI GGATC 1 cut(s) 216
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 6 cut(s) 215, 234, 279, 304, 347, 415
AcuI CTGAAG 1 cut(s) 384
AgsI TTSAA 1 cut(s) 27
AjuI GAANNNNNNNTTGG 2 cut(s) 295, 327
AluBI AGCT 3 cut(s) 198, 445, 527
AluI AGCT 3 cut(s) 198, 445, 527
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 3 cut(s) 362, 595, 605
AlwI GGATC 1 cut(s) 216
Ama87I CYCGRG 1 cut(s) 608
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 6 cut(s) 215, 234, 279, 304, 347, 415
Asp700I GAANNNNTTC 1 cut(s) 219
AvaI CYCGRG 1 cut(s) 608
BalI TGGCCA 1 cut(s) 227
BanII GRGCYC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 200
BccI CCATC 4 cut(s) 471, 490, 536, 550
BcoDI GTCTC 3 cut(s) 362, 595, 605
BfaI CTAG 4 cut(s) 15, 185, 212, 700
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 608
BmiI GGNNCC 1 cut(s) 406
BmrI ACTGGG 1 cut(s) 381
BmsI GCATC 3 cut(s) 27, 190, 657
BmuI ACTGGG 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 595
BsaWI WCCGGW 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 376
BseMII CTCAG 2 cut(s) 483, 543
BseNI ACTGG 1 cut(s) 376
BshFI GGCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 608
BsiSI CCGG 1 cut(s) 381
BslFI GGGAC 1 cut(s) 389
BsmAI GTCTC 3 cut(s) 362, 595, 605
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 595
BsoBI CYCGRG 1 cut(s) 608
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 1 cut(s) 208
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 2 cut(s) 484, 544
BspLI GGNNCC 1 cut(s) 406
BspPI GGATC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 595
BsrI ACTGG 1 cut(s) 376
BssMI GATC 1 cut(s) 208
BstC8I GCNNGC 3 cut(s) 6, 447, 529
BstDEI CTNAG 2 cut(s) 492, 552
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 3 cut(s) 362, 595, 605
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 2 cut(s) 395, 404
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BsuRI GGCC 1 cut(s) 227
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 3 cut(s) 6, 447, 529
CviAII CATG 2 cut(s) 193, 325
DdeI CTNAG 2 cut(s) 492, 552
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DraI TTTAAA 1 cut(s) 603
EaeI YGGCCR 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 595
Eco53kI GAGCTC 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 608
EcoICRI GAGCTC 1 cut(s) 198
EcoRI GAATTC 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 2 cut(s) 196, 328
FaqI GGGAC 1 cut(s) 389
FatI CATG 2 cut(s) 192, 324
FauNDI CATATG 1 cut(s) 361
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 9
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 4 cut(s) 15, 185, 212, 700
GluI GCNGC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 227
HapII CCGG 1 cut(s) 381
Hin1II CATG 2 cut(s) 196, 328
HinfI GANTC 2 cut(s) 377, 684
HpaII CCGG 1 cut(s) 381
Hpy166II GTNNAC 2 cut(s) 146, 341
Hpy188I TCNGA 2 cut(s) 277, 595
Hpy188III TCNNGA 4 cut(s) 212, 402, 466, 485
Hpy8I GTNNAC 2 cut(s) 146, 341
HpyAV CCTTC 2 cut(s) 113, 230
HpyCH4V TGCA 6 cut(s) 11, 43, 122, 181, 413, 648
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 404
HpyF3I CTNAG 2 cut(s) 492, 552
Hsp92II CATG 2 cut(s) 196, 328
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 3 cut(s) 404, 442, 524
LpnPI CCDG 8 cut(s) 209, 224, 250, 357, 387, 394, 431, 513
LweI GCATC 3 cut(s) 27, 190, 657
MaeI CTAG 4 cut(s) 15, 185, 212, 700
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 200
MlsI TGGCCA 1 cut(s) 227
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 2 cut(s) 186, 315
Mox20I TGGCCA 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 219
MscI TGGCCA 1 cut(s) 227
MseI TTAA 1 cut(s) 602
Msp20I TGGCCA 1 cut(s) 227
MspI CCGG 1 cut(s) 381
MwoI GCNNNNNNNGC 2 cut(s) 395, 404
NdeI CATATG 1 cut(s) 361
NdeII GATC 1 cut(s) 208
NlaIII CATG 2 cut(s) 196, 328
NlaIV GGNNCC 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 684
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
Psp124BI GAGCTC 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 406
PsrI GAACNNNNNNTAC 2 cut(s) 609, 641
PsuI RGATCY 1 cut(s) 208
SacI GAGCTC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 602
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 1 cut(s) 208
SchI GAGTC 1 cut(s) 371
SduI GDGCHC 1 cut(s) 200
SetI ASST 6 cut(s) 200, 263, 447, 473, 511, 529
SfaNI GCATC 3 cut(s) 27, 190, 657
SspI AATATT 1 cut(s) 599
SspMI CTAG 4 cut(s) 15, 185, 212, 700
SstI GAGCTC 1 cut(s) 200
TaqI TCGA 3 cut(s) 465, 484, 651
TaqII GACCGA 1 cut(s) 577
TfiI GAWTC 1 cut(s) 684
Tru1I TTAA 1 cut(s) 602
Tru9I TTAA 1 cut(s) 602
TscAI CASTG 1 cut(s) 415
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 4 cut(s) 43, 51, 152, 243
TspRI CASTG 1 cut(s) 415
XapI RAATTY 6 cut(s) 215, 234, 279, 304, 347, 415
XbaI TCTAGA 1 cut(s) 211
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 219
XspI CTAG 4 cut(s) 15, 185, 212, 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.