Rmu_sc0014139.1_g000002

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014139.1
OG0000419
Physical Location & Seq
Reverse (-)
3428 .. 4651
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014139.1_g000002.1.cds

Sequence Viewer

Length: 1149 bp
atgctgaggaatccaaagaaaaaaatcctcaaaaagtttttgctaggtccaaaaggactagccataactaatcaatcccaaggtaaaggattggctagtccgtctcaaatggctgacggtaaaggctcatcaagatcgtttaaggctattgctttgccaaaaagcaaaacaactccatatgaggttataaatgtttttaattatgaattgaaaaccctcgaagaacttgtgtttagaactggcaggagattagcatactaccaaaaggctattttagatcatcgtttatatgtttttaaggatagtaatagtggactcatgttcccagccttgtttgccctacctgaagaacttcatgaaaacgccagaccacagttcgaagaagtttatgaaaatacacagcagagtgctgtccagaatgaaaaaattcaatatcttgaagatcctgaaagtgctaaagttcctgttttagcactaaaagaattagattggttcgactttcataatcttattgggagtcataactctgactcatgtcttcctccaaccctcttcattgtctctagaccttatgttggaagatatgtagttaatgttcagagtgaacatcctcaagaacacaagctctggcttgttgaaaatggttttgtccataatctctggactaaaaccaatgatgatctcaaaagactgccacccattatagtaaacacagtcaagaatgttagaaaaaatgattgcattcttaggttgaagttcatatctactccaccagaatggattcagaagaaaaatggatataatggccaaccaaattctagcatcccctggatgaaggctatgtctttagagtacattaaaaagattatcgaagaagatactgaaaatacattcctggcagcaggagagaaaatcatagtaattgcatatgaccatcctgaggttattagcagtgacctttttctatctctcaagaaaaaggaaatcgattccactttggcctgttttcagtgggtcgaaaaaattgaaaatgacaaccactgcaagatgtatgaagatacaggtgtagaggaaaatagaaccaaagctatgatggaaagcaactcttttgtccttggtcacaattctgaaacagatgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

382

Amino Acids

43.89

Weight (kDa)

6.58

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 1 cut(s) 805
AcsI RAATTY 2 cut(s) 426, 814
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 1 cut(s) 854
AfiI CCNNNNNNNGG 2 cut(s) 575, 940
AflIII ACRYGT 1 cut(s) 1143
AgsI TTSAA 6 cut(s) 211, 431, 440, 638, 754, 1028
AjnI CCWGG 2 cut(s) 827, 894
AluBI AGCT 2 cut(s) 625, 1088
AluI AGCT 2 cut(s) 625, 1088
Alw26I GTCTC 2 cut(s) 108, 565
AlwI GGATC 1 cut(s) 437
AoxI GGCC 2 cut(s) 805, 999
ApeKI GCWGC 1 cut(s) 899
ApoI RAATTY 2 cut(s) 426, 814
Asp700I GAANNNNTTC 3 cut(s) 351, 426, 780
AspS9I GGNCC 1 cut(s) 47
AsuII TTCGAA 1 cut(s) 378
AvaII GGWCC 1 cut(s) 47
AxyI CCTNAGG 1 cut(s) 939
BaeI ACNNNNGTAYC 2 cut(s) 1050, 1083
BalI TGGCCA 1 cut(s) 807
BbsI GAAGAC 1 cut(s) 530
BbvCI CCTCAGC 1 cut(s) 5
BbvI GCAGC 1 cut(s) 911
BccI CCATC 2 cut(s) 942, 1087
BciT130I CCWGG 2 cut(s) 829, 896
BcoDI GTCTC 2 cut(s) 108, 565
BfaI CTAG 5 cut(s) 44, 59, 96, 564, 819
BisI GCNGC 1 cut(s) 900
BlsI GCNGC 1 cut(s) 901
Bme1390I CCNGG 2 cut(s) 829, 896
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmrFI CCNGG 2 cut(s) 829, 896
BmsI GCATC 1 cut(s) 831
BoxI GACNNNNGTC 1 cut(s) 534
BpiI GAAGAC 1 cut(s) 530
Bpu10I CCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 378
BpuEI CTTGAG 2 cut(s) 597, 956
Bsa29I ATCGAT 1 cut(s) 987
BsaJI CCNNGG 3 cut(s) 79, 827, 1114
Bsc4I CCNNNNNNNGG 2 cut(s) 575, 940
Bse1I ACTGG 1 cut(s) 244
Bse21I CCTNAGG 1 cut(s) 939
BseBI CCWGG 2 cut(s) 829, 896
BseCI ATCGAT 1 cut(s) 987
BseDI CCNNGG 3 cut(s) 79, 827, 1114
BseGI GGATG 4 cut(s) 607, 822, 837, 934
BseLI CCNNNNNNNGG 2 cut(s) 575, 940
BseMII CTCAG 1 cut(s) 930
BseNI ACTGG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 911
BseYI CCCAGC 1 cut(s) 325
BshFI GGCC 2 cut(s) 807, 1001
BshVI ATCGAT 1 cut(s) 987
BslI CCNNNNNNNGG 2 cut(s) 575, 940
BsmAI GTCTC 2 cut(s) 108, 565
BsmBI CGTCTC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 741
BsnI GGCC 2 cut(s) 807, 1001
Bsp119I TTCGAA 1 cut(s) 378
Bsp143I GATC 4 cut(s) 134, 277, 442, 679
BspANI GGCC 2 cut(s) 807, 1001
BspCNI CTCAG 1 cut(s) 931
BspDI ATCGAT 1 cut(s) 987
BspHI TCATGA 1 cut(s) 355
BspPI GGATC 1 cut(s) 437
BspT104I TTCGAA 1 cut(s) 378
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 3 cut(s) 79, 827, 1114
BssMI GATC 4 cut(s) 134, 277, 442, 679
BssT1I CCWWGG 2 cut(s) 79, 1114
Bst2UI CCWGG 2 cut(s) 829, 896
Bst4CI ACNGT 3 cut(s) 119, 375, 715
Bst6I CTCTTC 1 cut(s) 557
BstBI TTCGAA 1 cut(s) 378
BstDEI CTNAG 3 cut(s) 5, 746, 939
BstF5I GGATG 4 cut(s) 607, 822, 837, 934
BstKTI GATC 4 cut(s) 137, 280, 445, 682
BstMAI GTCTC 2 cut(s) 108, 565
BstMBI GATC 4 cut(s) 134, 277, 442, 679
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNI CCWGG 2 cut(s) 829, 896
BstNSI RCATGY 1 cut(s) 1147
BstPAI GACNNNNGTC 1 cut(s) 534
BstSCI CCNGG 2 cut(s) 827, 894
BstV1I GCAGC 1 cut(s) 911
BstV2I GAAGAC 1 cut(s) 530
BstX2I RGATCY 1 cut(s) 442
BstXI CCANNNNNNTGG 1 cut(s) 777
BstYI RGATCY 1 cut(s) 442
Bsu15I ATCGAT 1 cut(s) 987
Bsu36I CCTNAGG 1 cut(s) 939
BsuRI GGCC 2 cut(s) 807, 1001
BsuTUI ATCGAT 1 cut(s) 987
BtsCI GGATG 4 cut(s) 607, 822, 837, 934
BtsI GCAGTG 2 cut(s) 958, 1039
BtsIMutI CAGTG 3 cut(s) 958, 1016, 1039
CciI TCATGA 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 47
ClaI ATCGAT 1 cut(s) 987
Csp6I GTAC 1 cut(s) 853
CviAII CATG 4 cut(s) 319, 356, 534, 1144
CviQI GTAC 1 cut(s) 853
DdeI CTNAG 3 cut(s) 5, 746, 939
DpnI GATC 4 cut(s) 136, 279, 444, 681
DpnII GATC 4 cut(s) 134, 277, 442, 679
EaeI YGGCCR 1 cut(s) 805
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Eco130I CCWWGG 2 cut(s) 79, 1114
Eco47I GGWCC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 366
Eco81I CCTNAGG 1 cut(s) 939
EcoRII CCWGG 2 cut(s) 827, 894
EcoT14I CCWWGG 2 cut(s) 79, 1114
ErhI CCWWGG 2 cut(s) 79, 1114
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 4 cut(s) 322, 359, 537, 1147
FalI AAGNNNNNCTT 2 cut(s) 1090, 1122
FatI CATG 4 cut(s) 318, 355, 533, 1143
FauNDI CATATG 2 cut(s) 178, 928
Fnu4HI GCNGC 1 cut(s) 900
FokI GGATG 4 cut(s) 594, 809, 844, 921
Fsp4HI GCNGC 1 cut(s) 900
FspBI CTAG 5 cut(s) 44, 59, 96, 564, 819
GluI GCNGC 1 cut(s) 900
GsaI CCCAGC 1 cut(s) 329
HaeIII GGCC 2 cut(s) 807, 1001
Hin1II CATG 4 cut(s) 322, 359, 537, 1147
HinfI GANTC 6 cut(s) 10, 315, 517, 530, 781, 989
Hpy166II GTNNAC 3 cut(s) 314, 605, 709
Hpy188I TCNGA 4 cut(s) 529, 600, 786, 1129
Hpy8I GTNNAC 3 cut(s) 314, 605, 709
HpyAV CCTTC 1 cut(s) 829
HpyCH4III ACNGT 3 cut(s) 119, 375, 715
HpyCH4V TGCA 3 cut(s) 741, 926, 1044
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 3 cut(s) 5, 746, 939
Hsp92II CATG 4 cut(s) 322, 359, 537, 1147
Kzo9I GATC 4 cut(s) 134, 277, 442, 679
Lsp1109I GCAGC 1 cut(s) 911
LweI GCATC 1 cut(s) 831
MaeI CTAG 5 cut(s) 44, 59, 96, 564, 819
MaeIII GTNAC 2 cut(s) 953, 1118
MalI GATC 4 cut(s) 136, 279, 444, 681
MboI GATC 4 cut(s) 134, 277, 442, 679
MflI RGATCY 1 cut(s) 442
MlsI TGGCCA 1 cut(s) 807
MluCI AATT 8 cut(s) 199, 206, 426, 482, 814, 921, 1023, 1123
MluNI TGGCCA 1 cut(s) 807
MlyI GAGTC 3 cut(s) 309, 524, 526
MmeI TCCRAC 2 cut(s) 556, 569
MnlI CCTC 8 cut(s) 38, 175, 227, 552, 560, 621, 934, 1063
Mox20I TGGCCA 1 cut(s) 807
MroXI GAANNNNTTC 3 cut(s) 351, 426, 780
MscI TGGCCA 1 cut(s) 807
MseI TTAA 5 cut(s) 141, 198, 297, 591, 858
MslI CAYNNNNRTG 1 cut(s) 775
Msp20I TGGCCA 1 cut(s) 807
MspR9I CCNGG 2 cut(s) 829, 896
Mva1269I GAATGC 1 cut(s) 741
MvaI CCWGG 2 cut(s) 829, 896
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeI CATATG 2 cut(s) 178, 928
NdeII GATC 4 cut(s) 134, 277, 442, 679
NlaIII CATG 4 cut(s) 322, 359, 537, 1147
NmuCI GTSAC 2 cut(s) 953, 1118
NspI RCATGY 1 cut(s) 1147
NspV TTCGAA 1 cut(s) 378
PagI TCATGA 1 cut(s) 355
PciI ACATGT 1 cut(s) 1143
PctI GAATGC 1 cut(s) 741
PdmI GAANNNNTTC 3 cut(s) 351, 426, 780
PfeI GAWTC 3 cut(s) 10, 781, 989
PkrI GCNGC 1 cut(s) 901
PleI GAGTC 3 cut(s) 309, 524, 525
PpsI GAGTC 3 cut(s) 309, 524, 525
PscI ACATGT 1 cut(s) 1143
PshAI GACNNNNGTC 1 cut(s) 534
PsiI TTATAA 1 cut(s) 188
Psp6I CCWGG 2 cut(s) 827, 894
PspFI CCCAGC 1 cut(s) 325
PspGI CCWGG 2 cut(s) 827, 894
PspPI GGNCC 1 cut(s) 47
PsrI GAACNNNNNNTAC 2 cut(s) 579, 611
PsuI RGATCY 1 cut(s) 442
RsaI GTAC 1 cut(s) 854
RsaNI GTAC 1 cut(s) 853
RseI CAYNNNNRTG 1 cut(s) 775
SaqAI TTAA 5 cut(s) 141, 198, 297, 591, 858
SatI GCNGC 1 cut(s) 900
Sau3AI GATC 4 cut(s) 134, 277, 442, 679
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 3 cut(s) 309, 524, 526
ScrFI CCNGG 2 cut(s) 829, 896
SfaNI GCATC 1 cut(s) 831
SfuI TTCGAA 1 cut(s) 378
SinI GGWCC 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 775
SmlI CTYRAG 2 cut(s) 612, 971
SmoI CTYRAG 2 cut(s) 612, 971
Sse9I AATT 8 cut(s) 199, 206, 426, 482, 814, 921, 1023, 1123
SspMI CTAG 5 cut(s) 44, 59, 96, 564, 819
StyD4I CCNGG 2 cut(s) 827, 894
StyI CCWWGG 2 cut(s) 79, 1114
TaaI ACNGT 3 cut(s) 119, 375, 715
TaqI TCGA 6 cut(s) 219, 378, 495, 870, 987, 1017
TasI AATT 8 cut(s) 199, 206, 426, 482, 814, 921, 1023, 1123
TatI WGTACW 1 cut(s) 852
TfiI GAWTC 3 cut(s) 10, 781, 989
Tru1I TTAA 5 cut(s) 141, 198, 297, 591, 858
Tru9I TTAA 5 cut(s) 141, 198, 297, 591, 858
TscAI CASTG 3 cut(s) 958, 1016, 1046
TseFI GTSAC 2 cut(s) 953, 1118
TseI GCWGC 1 cut(s) 899
Tsp45I GTSAC 2 cut(s) 953, 1118
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 3 cut(s) 958, 1016, 1046
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 2 cut(s) 426, 814
XbaI TCTAGA 1 cut(s) 563
XceI RCATGY 1 cut(s) 1147
XcmI CCANNNNNNNNNTGG 1 cut(s) 1090
XmnI GAANNNNTTC 3 cut(s) 351, 426, 780
XspI CTAG 5 cut(s) 44, 59, 96, 564, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.