Rmu_sc0002765.1_g000002

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002765.1
OG0000419
Physical Location & Seq
Forward (+)
8757 .. 9780
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002765.1_g000002.1.cds

Sequence Viewer

Length: 693 bp
atgacaatgtttagccaaagagatgatgacgaaggtcgtaatcccagaagcagaagaactgggaaagaacatgagcctgaagaggatcccaaagaaaccaaagaaaaaatcctcaaaaggtttctgctaagtccaaaaggactagccacaactgatcaatcccaggaaagaagcagtggtctgatgtttccagctctctttgccctaactgaagaactctacgaaaatggaagaccacagtttgaagaacttcacacacagcagagtgctttaagaaaagaaaaaattcacttccttgaaagcccagaaagtgctaggcctgcctgtgttggttacaatggccaaccaaactcaagcattccatggatgaaagccatgactttagaatatgttaagaagatcatctctgaagatatcaacaataccttcctggcagcaggagaaaaaactattatcactgcttacaatcatcctgacgtagtcagcaatgacctgttcctatctcttaccagaaaagagatagattcgacactggcatgcttacagtgggtagaaagacttgaaacagacaaccactataaaatgtatgttgataaagatgtcgaagacaatgcaacaactgttcgtatggcccaggcagacaacaactcctttgtccttggccacaactctgaaacagacgaaaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

230

Amino Acids

26.38

Weight (kDa)

5.03

Isoelectric Point (pI)

57.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 80, 93
AcoI YGGCCR 2 cut(s) 340, 661
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 3 cut(s) 99, 231, 429
AflIII ACRYGT 1 cut(s) 687
AgsI TTSAA 3 cut(s) 245, 299, 563
AjnI CCWGG 3 cut(s) 162, 429, 633
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
AlwI GGATC 2 cut(s) 80, 93
AoxI GGCC 4 cut(s) 317, 340, 630, 661
ApeKI GCWGC 1 cut(s) 434
ApoI RAATTY 1 cut(s) 285
Asp700I GAANNNNTTC 2 cut(s) 249, 285
AspS9I GGNCC 1 cut(s) 631
BalI TGGCCA 2 cut(s) 342, 663
BamHI GGATCC 1 cut(s) 85
BbsI GAAGAC 2 cut(s) 238, 612
BbvI GCAGC 1 cut(s) 446
BcgI CGANNNNNNTGC 2 cut(s) 593, 627
BciT130I CCWGG 3 cut(s) 164, 431, 635
BclI TGATCA 1 cut(s) 154
BfaI CTAG 2 cut(s) 143, 315
BisI GCNGC 1 cut(s) 435
BlsI GCNGC 1 cut(s) 436
Bme1390I CCNGG 3 cut(s) 164, 431, 635
BmgT120I GGNCC 1 cut(s) 631
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 3 cut(s) 164, 431, 635
BmrI ACTGGG 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 69
BoxI GACNNNNGTC 1 cut(s) 33
BpiI GAAGAC 2 cut(s) 238, 612
BpuEI CTTGAG 1 cut(s) 337
BsaJI CCNNGG 4 cut(s) 162, 362, 633, 658
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bse1I ACTGG 2 cut(s) 64, 537
Bse3DI GCAATG 1 cut(s) 493
BseBI CCWGG 3 cut(s) 164, 431, 635
BseDI CCNNGG 4 cut(s) 162, 362, 633, 658
BseGI GGATG 2 cut(s) 372, 469
BseMI GCAATG 1 cut(s) 493
BseNI ACTGG 2 cut(s) 64, 537
BseXI GCAGC 1 cut(s) 446
BshFI GGCC 4 cut(s) 319, 342, 632, 663
BsmI GAATGC 1 cut(s) 357
BsnI GGCC 4 cut(s) 319, 342, 632, 663
Bsp143I GATC 3 cut(s) 85, 154, 399
Bsp19I CCATGG 1 cut(s) 362
BspANI GGCC 4 cut(s) 319, 342, 632, 663
BspLI GGNNCC 1 cut(s) 87
BspPI GGATC 2 cut(s) 80, 93
BsrDI GCAATG 1 cut(s) 493
BsrI ACTGG 2 cut(s) 64, 537
BssECI CCNNGG 4 cut(s) 162, 362, 633, 658
BssMI GATC 3 cut(s) 85, 154, 399
BssT1I CCWWGG 2 cut(s) 362, 658
Bst2UI CCWGG 3 cut(s) 164, 431, 635
Bst4CI ACNGT 3 cut(s) 240, 546, 622
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 321, 538
BstDEI CTNAG 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 362
BstF5I GGATG 2 cut(s) 372, 469
BstKTI GATC 3 cut(s) 88, 157, 402
BstMBI GATC 3 cut(s) 85, 154, 399
BstMWI GCNNNNNNNGC 2 cut(s) 200, 320
BstNI CCWGG 3 cut(s) 164, 431, 635
BstNSI RCATGY 2 cut(s) 540, 691
BstPAI GACNNNNGTC 1 cut(s) 33
BstSCI CCNGG 3 cut(s) 162, 429, 633
BstV1I GCAGC 1 cut(s) 446
BstV2I GAAGAC 2 cut(s) 238, 612
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 4 cut(s) 319, 342, 632, 663
BtgI CCRYGG 1 cut(s) 362
BtsCI GGATG 2 cut(s) 372, 469
BtsI GCAGTG 2 cut(s) 181, 456
BtsIMutI CAGTG 4 cut(s) 181, 456, 530, 551
Cac8I GCNNGC 2 cut(s) 321, 538
Cfr13I GGNCC 1 cut(s) 631
CviAII CATG 5 cut(s) 71, 363, 376, 537, 688
DdeI CTNAG 1 cut(s) 128
DpnI GATC 3 cut(s) 87, 156, 401
DpnII GATC 3 cut(s) 85, 154, 399
EaeI YGGCCR 2 cut(s) 340, 661
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco130I CCWWGG 2 cut(s) 362, 658
Eco147I AGGCCT 1 cut(s) 319
Eco32I GATATC 1 cut(s) 415
Eco57I CTGAAG 3 cut(s) 99, 231, 429
EcoRII CCWGG 3 cut(s) 162, 429, 633
EcoRV GATATC 1 cut(s) 415
EcoT14I CCWWGG 2 cut(s) 362, 658
ErhI CCWWGG 2 cut(s) 362, 658
FaeI CATG 5 cut(s) 74, 366, 379, 540, 691
FaiI YATR 9 cut(s) 72, 364, 377, 390, 538, 579, 588, 629, 689
FatI CATG 5 cut(s) 70, 362, 375, 536, 687
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 435
FokI GGATG 2 cut(s) 379, 456
Fsp4HI GCNGC 1 cut(s) 435
FspBI CTAG 2 cut(s) 143, 315
GluI GCNGC 1 cut(s) 435
HaeIII GGCC 4 cut(s) 319, 342, 632, 663
Hin1II CATG 5 cut(s) 74, 366, 379, 540, 691
HinfI GANTC 1 cut(s) 524
Hpy188I TCNGA 3 cut(s) 183, 409, 673
Hpy188III TCNNGA 1 cut(s) 473
HpyAV CCTTC 2 cut(s) 26, 436
HpyCH4III ACNGT 3 cut(s) 240, 546, 622
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 1 cut(s) 614
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 320
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 5 cut(s) 74, 366, 379, 540, 691
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 3 cut(s) 85, 154, 399
Lsp1109I GCAGC 1 cut(s) 446
MaeI CTAG 2 cut(s) 143, 315
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 332
MalI GATC 3 cut(s) 87, 156, 401
MboI GATC 3 cut(s) 85, 154, 399
MboII GAAGA 8 cut(s) 66, 92, 224, 243, 257, 409, 422, 617
MflI RGATCY 1 cut(s) 85
MlsI TGGCCA 2 cut(s) 342, 663
MluCI AATT 1 cut(s) 285
MluNI TGGCCA 2 cut(s) 342, 663
MnlI CCTC 2 cut(s) 76, 122
Mox20I TGGCCA 2 cut(s) 342, 663
MroXI GAANNNNTTC 2 cut(s) 249, 285
MscI TGGCCA 2 cut(s) 342, 663
MseI TTAA 2 cut(s) 272, 393
MslI CAYNNNNRTG 1 cut(s) 535
Msp20I TGGCCA 2 cut(s) 342, 663
MspR9I CCNGG 3 cut(s) 164, 431, 635
Mva1269I GAATGC 1 cut(s) 357
MvaI CCWGG 3 cut(s) 164, 431, 635
MwoI GCNNNNNNNGC 2 cut(s) 200, 320
NcoI CCATGG 1 cut(s) 362
NdeII GATC 3 cut(s) 85, 154, 399
NlaIII CATG 5 cut(s) 74, 366, 379, 540, 691
NlaIV GGNNCC 1 cut(s) 87
NspI RCATGY 2 cut(s) 540, 691
PaeI GCATGC 1 cut(s) 540
PceI AGGCCT 1 cut(s) 319
PciI ACATGT 1 cut(s) 687
PctI GAATGC 1 cut(s) 357
PdmI GAANNNNTTC 2 cut(s) 249, 285
PfeI GAWTC 1 cut(s) 524
PflFI GACNNNGTC 1 cut(s) 479
PkrI GCNGC 1 cut(s) 436
PscI ACATGT 1 cut(s) 687
PshAI GACNNNNGTC 1 cut(s) 33
Psp6I CCWGG 3 cut(s) 162, 429, 633
PspGI CCWGG 3 cut(s) 162, 429, 633
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 631
PsuI RGATCY 1 cut(s) 85
PsyI GACNNNGTC 1 cut(s) 479
RseI CAYNNNNRTG 1 cut(s) 535
SaqAI TTAA 2 cut(s) 272, 393
SatI GCNGC 1 cut(s) 435
Sau3AI GATC 3 cut(s) 85, 154, 399
Sau96I GGNCC 1 cut(s) 631
ScrFI CCNGG 3 cut(s) 164, 431, 635
SetI ASST 6 cut(s) 37, 122, 196, 428, 480, 495
SmiMI CAYNNNNRTG 1 cut(s) 535
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
SphI GCATGC 1 cut(s) 540
Sse9I AATT 1 cut(s) 285
SseBI AGGCCT 1 cut(s) 319
SspMI CTAG 2 cut(s) 143, 315
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 3 cut(s) 162, 429, 633
StyI CCWWGG 2 cut(s) 362, 658
TaaI ACNGT 3 cut(s) 240, 546, 622
TaiI ACGT 1 cut(s) 480
TaqI TCGA 2 cut(s) 527, 603
TasI AATT 1 cut(s) 285
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 2 cut(s) 272, 393
Tru9I TTAA 2 cut(s) 272, 393
TscAI CASTG 4 cut(s) 181, 463, 537, 551
TseI GCWGC 1 cut(s) 434
TspDTI ATGAA 1 cut(s) 383
TspRI CASTG 4 cut(s) 181, 463, 537, 551
Tth111I GACNNNGTC 1 cut(s) 479
XapI RAATTY 1 cut(s) 285
XceI RCATGY 2 cut(s) 540, 691
XmnI GAANNNNTTC 2 cut(s) 249, 285
XspI CTAG 2 cut(s) 143, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.