Rmu_sc0002895.1_g000014

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002895.1
OG0000419
Physical Location & Seq
Forward (+)
67116 .. 68203
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002895.1_g000014.1.cds

Sequence Viewer

Length: 1014 bp
atggctgttgctttgccaaaaagcagaccaactccaactggagttataaatgtttttaattatgaattgagaacttttgattctcctgtgttcagaactggcaggagactagcttatcaccagaaggcaatcctggataatcttctgtttgcctttcaagaaagaagcagtggtctaatgttcccagctctctttgcattagctgaagaactctacgaaaacggaataccacagtttgaagaaagtcatacacagcagagtgctgtaagaaaagaaaaaaaattcacttcttggaaagtcctgaaagtgctaggatcccgatcatggcactcaatgagtcagattggaccttatgttgggagatacttagtcaatgttcagagtgaacatcctcaagaacacaagctctggcttgttgaaaatggttttgtccataacctgtggactaaaacaaatgatgatcttagaggtttgccgcccatcattgtcaacacagtcaaaaacattagaaaaaatgactgtatacttcgtctgaagttcagatccactcctccagaatggatccataaggtaaacggtgaagttgaatatattcctccatatcattatgtgagaattattcaaaggaaatatcttcaaccggcctgtgtagggtacaatggccaaccaaactcaagcattccatggatgaaggccatgactctagaatatatcaagaagatcatctctgaagatgtccacaatactttcctagaagcaggagaaaaaattattatcactgcttacgatcatcctgatgtagtcagcagtgacctattcctatcttttaccagaaaggagatagactcgacactggcatgcttgcattgggtggaaaaacttgaaacaaacaaccactacaagatgtatgttgatacagatgtcgaagacaatgcaacaactgctcgaatggcccaggcagataacgactcatttgtccttggtcacaattcagaaaccgacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

337

Amino Acids

38.96

Weight (kDa)

6.68

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 47
AasI GACNNNNNNGTC 1 cut(s) 974
AccI GTMKAC 1 cut(s) 523
AciI CCGC 1 cut(s) 476
AclWI GGATC 5 cut(s) 309, 322, 537, 556, 569
AcoI YGGCCR 1 cut(s) 661
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 3 cut(s) 225, 554, 750
AfaI GTAC 1 cut(s) 656
AfiI CCNNNNNNNGG 3 cut(s) 324, 356, 651
AflIII ACRYGT 1 cut(s) 1008
AgsI TTSAA 7 cut(s) 158, 239, 419, 587, 623, 638, 884
AjnI CCWGG 2 cut(s) 132, 954
AluBI AGCT 4 cut(s) 113, 188, 203, 406
AluI AGCT 4 cut(s) 113, 188, 203, 406
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 5 cut(s) 309, 322, 537, 556, 569
AoxI GGCC 4 cut(s) 642, 661, 693, 951
ApoI RAATTY 1 cut(s) 281
Asp700I GAANNNNTTC 1 cut(s) 591
AspS9I GGNCC 2 cut(s) 347, 952
AsuHPI GGTGA 2 cut(s) 110, 590
AvaII GGWCC 1 cut(s) 347
BaeI ACNNNNGTAYC 2 cut(s) 906, 939
BalI TGGCCA 1 cut(s) 663
BamHI GGATCC 2 cut(s) 314, 561
BbsI GAAGAC 1 cut(s) 933
BccI CCATC 1 cut(s) 488
BcgI CGANNNNNNTGC 2 cut(s) 914, 948
BciT130I CCWGG 2 cut(s) 134, 956
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 4 cut(s) 110, 311, 704, 752
BisI GCNGC 1 cut(s) 476
BlsI GCNGC 1 cut(s) 477
Bme1390I CCNGG 2 cut(s) 134, 956
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 2 cut(s) 347, 952
BmiI GGNNCC 2 cut(s) 316, 563
BmrFI CCNGG 2 cut(s) 134, 956
BpiI GAAGAC 1 cut(s) 933
BplI GAGNNNNNCTC 2 cut(s) 830, 862
BpmI CTGGAG 2 cut(s) 60, 537
BpuEI CTTGAG 2 cut(s) 378, 658
BsaBI GATNNNNATC 1 cut(s) 319
BsaJI CCNNGG 3 cut(s) 683, 954, 979
Bsc4I CCNNNNNNNGG 3 cut(s) 324, 356, 651
Bse118I RCCGGY 1 cut(s) 640
Bse1I ACTGG 3 cut(s) 43, 103, 858
Bse8I GATNNNNATC 1 cut(s) 319
BseBI CCWGG 2 cut(s) 134, 956
BseDI CCNNGG 3 cut(s) 683, 954, 979
BseGI GGATG 3 cut(s) 388, 693, 790
BseJI GATNNNNATC 1 cut(s) 319
BseLI CCNNNNNNNGG 3 cut(s) 324, 356, 651
BseNI ACTGG 3 cut(s) 43, 103, 858
BseRI GAGGAG 1 cut(s) 540
BseYI CCCAGC 1 cut(s) 184
BshFI GGCC 4 cut(s) 644, 663, 695, 953
BsiSI CCGG 1 cut(s) 641
BslI CCNNNNNNNGG 3 cut(s) 324, 356, 651
BsmAI GTCTC 1 cut(s) 100
BsmI GAATGC 1 cut(s) 678
BsnI GGCC 4 cut(s) 644, 663, 695, 953
Bsp143I GATC 7 cut(s) 314, 320, 460, 542, 561, 720, 787
Bsp19I CCATGG 1 cut(s) 683
BspACI CCGC 1 cut(s) 476
BspANI GGCC 4 cut(s) 644, 663, 695, 953
BspLI GGNNCC 2 cut(s) 316, 563
BspPI GGATC 5 cut(s) 309, 322, 537, 556, 569
BsrFI RCCGGY 1 cut(s) 640
BsrI ACTGG 3 cut(s) 43, 103, 858
BssAI RCCGGY 1 cut(s) 640
BssECI CCNNGG 3 cut(s) 683, 954, 979
BssMI GATC 7 cut(s) 314, 320, 460, 542, 561, 720, 787
BssNAI GTATAC 1 cut(s) 524
BssT1I CCWWGG 2 cut(s) 683, 979
Bst1107I GTATAC 1 cut(s) 524
Bst2UI CCWGG 2 cut(s) 134, 956
Bst4CI ACNGT 4 cut(s) 234, 496, 521, 578
BstAPI GCANNNNNTGC 1 cut(s) 941
BstC8I GCNNGC 2 cut(s) 859, 863
BstDEI CTNAG 2 cut(s) 367, 464
BstDSI CCRYGG 1 cut(s) 683
BstF5I GGATG 3 cut(s) 388, 693, 790
BstKTI GATC 7 cut(s) 317, 323, 463, 545, 564, 723, 790
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 7 cut(s) 314, 320, 460, 542, 561, 720, 787
BstMWI GCNNNNNNNGC 3 cut(s) 194, 941, 950
BstNI CCWGG 2 cut(s) 134, 956
BstNSI RCATGY 2 cut(s) 861, 1012
BstSCI CCNGG 2 cut(s) 132, 954
BstV2I GAAGAC 1 cut(s) 933
BstX2I RGATCY 3 cut(s) 314, 542, 561
BstYI RGATCY 3 cut(s) 314, 542, 561
BstZ17I GTATAC 1 cut(s) 524
BsuRI GGCC 4 cut(s) 644, 663, 695, 953
BtgI CCRYGG 1 cut(s) 683
BtsCI GGATG 3 cut(s) 388, 693, 790
BtsI GCAGTG 3 cut(s) 175, 777, 814
BtsIMutI CAGTG 4 cut(s) 175, 777, 814, 851
Cac8I GCNNGC 2 cut(s) 859, 863
Cfr10I RCCGGY 1 cut(s) 640
Cfr13I GGNCC 2 cut(s) 347, 952
Csp6I GTAC 1 cut(s) 655
CviAII CATG 5 cut(s) 324, 684, 697, 858, 1009
CviQI GTAC 1 cut(s) 655
DdeI CTNAG 2 cut(s) 367, 464
DpnI GATC 7 cut(s) 316, 322, 462, 544, 563, 722, 789
DpnII GATC 7 cut(s) 314, 320, 460, 542, 561, 720, 787
DrdI GACNNNNNNGTC 1 cut(s) 974
DseDI GACNNNNNNGTC 1 cut(s) 974
EaeI YGGCCR 1 cut(s) 661
Eco130I CCWWGG 2 cut(s) 683, 979
Eco47I GGWCC 1 cut(s) 347
Eco57I CTGAAG 3 cut(s) 225, 554, 750
EcoRII CCWGG 2 cut(s) 132, 954
EcoT14I CCWWGG 2 cut(s) 683, 979
ErhI CCWWGG 2 cut(s) 683, 979
FaeI CATG 5 cut(s) 327, 687, 700, 861, 1012
FatI CATG 5 cut(s) 323, 683, 696, 857, 1008
FblI GTMKAC 1 cut(s) 523
Fnu4HI GCNGC 1 cut(s) 476
FokI GGATG 3 cut(s) 375, 700, 777
Fsp4HI GCNGC 1 cut(s) 476
FspBI CTAG 4 cut(s) 110, 311, 704, 752
GluI GCNGC 1 cut(s) 476
GsaI CCCAGC 1 cut(s) 188
GsuI CTGGAG 2 cut(s) 60, 537
HaeIII GGCC 4 cut(s) 644, 663, 695, 953
HapII CCGG 1 cut(s) 641
Hin1II CATG 5 cut(s) 327, 687, 700, 861, 1012
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HinfI GANTC 5 cut(s) 80, 337, 700, 845, 968
HpaII CCGG 1 cut(s) 641
HphI GGTGA 2 cut(s) 110, 590
Hpy166II GTNNAC 6 cut(s) 386, 444, 490, 524, 574, 739
Hpy188I TCNGA 7 cut(s) 95, 342, 381, 534, 542, 730, 994
Hpy188III TCNNGA 8 cut(s) 158, 301, 318, 395, 554, 704, 715, 794
Hpy8I GTNNAC 6 cut(s) 386, 444, 490, 524, 574, 739
Hpy99I CGWCG 1 cut(s) 1004
HpyAV CCTTC 2 cut(s) 118, 685
HpyCH4III ACNGT 4 cut(s) 234, 496, 521, 578
HpyCH4V TGCA 3 cut(s) 197, 865, 935
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 941, 950
HpyF3I CTNAG 2 cut(s) 367, 464
Hsp92II CATG 5 cut(s) 327, 687, 700, 861, 1012
Kzo9I GATC 7 cut(s) 314, 320, 460, 542, 561, 720, 787
MaeI CTAG 4 cut(s) 110, 311, 704, 752
MaeIII GTNAC 2 cut(s) 809, 983
MalI GATC 7 cut(s) 316, 322, 462, 544, 563, 722, 789
MboI GATC 7 cut(s) 314, 320, 460, 542, 561, 720, 787
MboII GAAGA 7 cut(s) 134, 218, 251, 626, 730, 743, 938
MflI RGATCY 3 cut(s) 314, 542, 561
MlsI TGGCCA 1 cut(s) 663
MluCI AATT 6 cut(s) 58, 65, 281, 615, 768, 988
MluNI TGGCCA 1 cut(s) 663
MlyI GAGTC 4 cut(s) 346, 694, 839, 962
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 4 cut(s) 402, 461, 561, 606
Mox20I TGGCCA 1 cut(s) 663
MroXI GAANNNNTTC 1 cut(s) 591
MscI TGGCCA 1 cut(s) 663
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 2 cut(s) 795, 856
Msp20I TGGCCA 1 cut(s) 663
MspI CCGG 1 cut(s) 641
MspR9I CCNGG 2 cut(s) 134, 956
Mva1269I GAATGC 1 cut(s) 678
MvaI CCWGG 2 cut(s) 134, 956
MwoI GCNNNNNNNGC 3 cut(s) 194, 941, 950
NcoI CCATGG 1 cut(s) 683
NdeII GATC 7 cut(s) 314, 320, 460, 542, 561, 720, 787
NlaIII CATG 5 cut(s) 327, 687, 700, 861, 1012
NlaIV GGNNCC 2 cut(s) 316, 563
NmuCI GTSAC 2 cut(s) 809, 983
NspI RCATGY 2 cut(s) 861, 1012
PaeI GCATGC 1 cut(s) 861
PciI ACATGT 1 cut(s) 1008
PctI GAATGC 1 cut(s) 678
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 1 cut(s) 80
PfoI TCCNGGA 1 cut(s) 132
PkrI GCNGC 1 cut(s) 477
PleI GAGTC 4 cut(s) 345, 694, 839, 962
PpsI GAGTC 4 cut(s) 345, 694, 839, 962
PscI ACATGT 1 cut(s) 1008
PsiI TTATAA 1 cut(s) 47
Psp6I CCWGG 2 cut(s) 132, 954
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 2 cut(s) 132, 954
PspN4I GGNNCC 2 cut(s) 316, 563
PspPI GGNCC 2 cut(s) 347, 952
PsuI RGATCY 3 cut(s) 314, 542, 561
RsaI GTAC 1 cut(s) 656
RsaNI GTAC 1 cut(s) 655
RseI CAYNNNNRTG 2 cut(s) 795, 856
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 476
Sau3AI GATC 7 cut(s) 314, 320, 460, 542, 561, 720, 787
Sau96I GGNCC 2 cut(s) 347, 952
SchI GAGTC 4 cut(s) 346, 694, 839, 962
ScrFI CCNGG 2 cut(s) 134, 956
SetI ASST 9 cut(s) 115, 190, 205, 352, 408, 441, 472, 573, 816
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 2 cut(s) 795, 856
SmlI CTYRAG 2 cut(s) 393, 673
SmoI CTYRAG 2 cut(s) 393, 673
SphI GCATGC 1 cut(s) 861
Sse9I AATT 6 cut(s) 58, 65, 281, 615, 768, 988
SsiI CCGC 1 cut(s) 476
SspMI CTAG 4 cut(s) 110, 311, 704, 752
StyD4I CCNGG 2 cut(s) 132, 954
StyI CCWWGG 2 cut(s) 683, 979
TaaI ACNGT 4 cut(s) 234, 496, 521, 578
TaqI TCGA 3 cut(s) 848, 924, 946
TasI AATT 6 cut(s) 58, 65, 281, 615, 768, 988
TauI GCSGC 1 cut(s) 478
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 4 cut(s) 175, 784, 814, 858
TseFI GTSAC 2 cut(s) 809, 983
Tsp45I GTSAC 2 cut(s) 809, 983
TspDTI ATGAA 2 cut(s) 78, 704
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 4 cut(s) 175, 784, 814, 858
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 1 cut(s) 281
XbaI TCTAGA 1 cut(s) 703
XceI RCATGY 2 cut(s) 861, 1012
XmiI GTMKAC 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 4 cut(s) 110, 311, 704, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.