Rmu_sc0002578.1_g000012

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002578.1
OG0000419
Physical Location & Seq
Forward (+)
66490 .. 66951
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002578.1_g000012.1.cds

Sequence Viewer

Length: 462 bp
atgctgagattgaagttcaaatccaccccgccagaatggattcagaaaacgaactgtgaagttgaatacatttctccatatcttcagcctgcctgtgttgcctacaatggccagccaaactcaagcattccatggatgaaggccatgtcactagagtacatcaagaagatcatctctaaagatatcaagaatactttcctggcaacaggagaaaaaacaattatcactgcttacgatcatcctaacgtagtcagcagtgacctttttctatctctcacaagaaaggagatagactcgacactggcatgcttacagtgggttgaaaagctggaaatagacaaccactacaagatgtatgttgatacaaatgtcgaagacaatgcaacaactgctcgtatggcccaagcaaataacagctcgtttgtccttggtcacaattcagaaattgacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

153

Amino Acids

17.49

Weight (kDa)

5.36

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 1 cut(s) 158
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 4 cut(s) 13, 19, 65, 323
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 2 cut(s) 328, 417
AluI AGCT 2 cut(s) 328, 417
AoxI GGCC 3 cut(s) 109, 141, 399
Asp700I GAANNNNTTC 2 cut(s) 39, 194
AspS9I GGNCC 1 cut(s) 400
BaeI ACNNNNGTAYC 2 cut(s) 354, 387
BalI TGGCCA 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 381
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BciT130I CCWGG 1 cut(s) 200
BfaI CTAG 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 400
BmrFI CCNGG 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 381
BplI GAGNNNNNCTC 2 cut(s) 278, 310
BpuEI CTTGAG 1 cut(s) 106
BsaJI CCNNGG 2 cut(s) 131, 427
Bse1I ACTGG 1 cut(s) 306
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 131, 427
BseGI GGATG 2 cut(s) 141, 238
BseNI ACTGG 1 cut(s) 306
BshFI GGCC 3 cut(s) 111, 143, 401
BsmI GAATGC 1 cut(s) 126
BsnI GGCC 3 cut(s) 111, 143, 401
Bsp143I GATC 2 cut(s) 168, 235
Bsp19I CCATGG 1 cut(s) 131
BspACI CCGC 1 cut(s) 29
BspANI GGCC 3 cut(s) 111, 143, 401
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 2 cut(s) 131, 427
BssMI GATC 2 cut(s) 168, 235
BssT1I CCWWGG 2 cut(s) 131, 427
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 56, 315
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 3 cut(s) 90, 113, 307
BstDEI CTNAG 1 cut(s) 5
BstDSI CCRYGG 1 cut(s) 131
BstF5I GGATG 2 cut(s) 141, 238
BstKTI GATC 2 cut(s) 171, 238
BstMBI GATC 2 cut(s) 168, 235
BstMWI GCNNNNNNNGC 3 cut(s) 98, 389, 398
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 2 cut(s) 309, 460
BstSCI CCNGG 1 cut(s) 198
BstV2I GAAGAC 1 cut(s) 381
BsuRI GGCC 3 cut(s) 111, 143, 401
BtgI CCRYGG 1 cut(s) 131
BtsCI GGATG 2 cut(s) 141, 238
BtsI GCAGTG 2 cut(s) 225, 262
BtsIMutI CAGTG 4 cut(s) 225, 262, 299, 320
Cac8I GCNNGC 3 cut(s) 90, 113, 307
Cfr13I GGNCC 1 cut(s) 400
Csp6I GTAC 1 cut(s) 157
CviAII CATG 4 cut(s) 132, 145, 306, 457
CviJI RGCY 7 cut(s) 88, 111, 115, 143, 328, 401, 417
CviKI_1 RGCY 7 cut(s) 88, 111, 115, 143, 328, 401, 417
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 5
DpnI GATC 2 cut(s) 170, 237
DpnII GATC 2 cut(s) 168, 235
EaeI YGGCCR 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 131, 427
Eco32I GATATC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 184
EcoT14I CCWWGG 2 cut(s) 131, 427
ErhI CCWWGG 2 cut(s) 131, 427
FaeI CATG 4 cut(s) 135, 148, 309, 460
FaiI YATR 7 cut(s) 79, 133, 146, 307, 357, 398, 458
FatI CATG 4 cut(s) 131, 144, 305, 456
FauI CCCGC 1 cut(s) 36
FokI GGATG 2 cut(s) 148, 225
FspBI CTAG 1 cut(s) 152
HaeIII GGCC 3 cut(s) 111, 143, 401
Hin1II CATG 4 cut(s) 135, 148, 309, 460
HinfI GANTC 2 cut(s) 40, 293
Hpy188I TCNGA 2 cut(s) 45, 442
Hpy188III TCNNGA 2 cut(s) 163, 187
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 2 cut(s) 56, 315
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 389, 398
HpyF3I CTNAG 1 cut(s) 5
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 4 cut(s) 135, 148, 309, 460
Kzo9I GATC 2 cut(s) 168, 235
LpnPI CCDG 9 cut(s) 45, 102, 106, 125, 185, 192, 212, 287, 314
MaeI CTAG 1 cut(s) 152
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 3 cut(s) 147, 257, 431
MalI GATC 2 cut(s) 170, 237
MboI GATC 2 cut(s) 168, 235
MboII GAAGA 3 cut(s) 74, 178, 386
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 3 cut(s) 219, 436, 444
MluNI TGGCCA 1 cut(s) 111
MlyI GAGTC 1 cut(s) 287
Mox20I TGGCCA 1 cut(s) 111
MroXI GAANNNNTTC 2 cut(s) 39, 194
MscI TGGCCA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 304
Msp20I TGGCCA 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 126
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 3 cut(s) 98, 389, 398
NcoI CCATGG 1 cut(s) 131
NdeII GATC 2 cut(s) 168, 235
NlaIII CATG 4 cut(s) 135, 148, 309, 460
NmuCI GTSAC 3 cut(s) 147, 257, 431
NspI RCATGY 2 cut(s) 309, 460
PaeI GCATGC 1 cut(s) 309
PciI ACATGT 1 cut(s) 456
PctI GAATGC 1 cut(s) 126
PdmI GAANNNNTTC 2 cut(s) 39, 194
PfeI GAWTC 1 cut(s) 40
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PscI ACATGT 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspPI GGNCC 1 cut(s) 400
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 304
Sau3AI GATC 2 cut(s) 168, 235
Sau96I GGNCC 1 cut(s) 400
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 200
SetI ASST 4 cut(s) 249, 264, 330, 419
SmiMI CAYNNNNRTG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
SphI GCATGC 1 cut(s) 309
Sse9I AATT 3 cut(s) 219, 436, 444
SsiI CCGC 1 cut(s) 29
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 2 cut(s) 131, 427
TaaI ACNGT 2 cut(s) 56, 315
TaiI ACGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 296, 372
TasI AATT 3 cut(s) 219, 436, 444
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 1 cut(s) 40
TscAI CASTG 4 cut(s) 232, 262, 306, 320
TseFI GTSAC 3 cut(s) 147, 257, 431
Tsp45I GTSAC 3 cut(s) 147, 257, 431
TspDTI ATGAA 1 cut(s) 152
TspRI CASTG 4 cut(s) 232, 262, 306, 320
XceI RCATGY 2 cut(s) 309, 460
XmnI GAANNNNTTC 2 cut(s) 39, 194
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.