Rmu_sc0009833.1_g000019

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009833.1
OG0000419
Physical Location & Seq
Forward (+)
75655 .. 76935
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009833.1_g000019.1.cds

Sequence Viewer

Length: 1281 bp
atgacgacgaaggtcgcaatcccagaagcagaagaactgggaaagaacatgaaactaatgacgatcctaaagaaaaaattcctcaaaaggttcctgctaaactcgaaaggcctagcctcaactgatcaatcccagggtaaaggattggctagcccgtctcaaacggcagacggtaaaggctcatcaagaccgttgacggctgctgctttgccaaaaagcagactaactccaaccgaagttataaatgtttttaattatgaattaagaacctttgatgctcctatgttcagaactggcaggagactaccttaccaccagaaagcaatcttggataatctcctttttgcttttcaagaaagaagcagtggtctaatgttcccagctctctttgccctagctgaagaactctacgagaatggtagaccacaatttgaagaacttcatacacaacagagtgctgtaagaaaagaaaaaatttacttccttgaaagtccagaaagtgcaagagtccctatcatggcacttaatgaatcagactggcatgaatttcatagtctgataggaagtcataattctgaagaccgagttcctccaactctctttatcatagcaggaccttatgttggaagatacttagtcaatattcagagtgaacatcctcaagaacacaagctttggcttgttgaaaatggttttgtccataatttgtggactaaaacaaatgatgatcttaaaggtttgccgcctatcattgtcaacacagtcaaaaatattagaaaaaatgactgcatgcttcgactgaatttcagatccactcctccagaatggattcagaaggcaaacggtgaggttgaatatatttctccatatcattatgtgagaattattcaaaggaaatatcttcagcctgcatgtgttggatacaacggccagccaaactcaagcatcccatggatgaaagccatggctctagaatacatcaaaaaggtcatctctgaagatatcaacaataccttcctggcagcaggagaaaaaacgattatcactgcttacgatcatcctgacgtagtcagcagtgacctgttcctatctcttaccagaaaagagatagattcgacactggcatgcttacagtgggtggaaagacttgaaacagacagccactacaagatgtatgttgatacagatgtcaaaaacaatgcaacaactgctcgtatggcccaggcagataacgactcatttgtccttggtcacaattcagaaacagacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

426

Amino Acids

48.5

Weight (kDa)

6.65

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AasI GACNNNNNNGTC 1 cut(s) 1241
AccI GTMKAC 1 cut(s) 421
AciI CCGC 1 cut(s) 743
AclWI GGATC 2 cut(s) 58, 804
AcoI YGGCCR 1 cut(s) 928
AcsI RAATTY 4 cut(s) 77, 474, 545, 802
AcuI CTGAAG 4 cut(s) 420, 597, 887, 1017
AfiI CCNNNNNNNGG 2 cut(s) 517, 623
AflIII ACRYGT 1 cut(s) 1275
AgsI TTSAA 7 cut(s) 353, 434, 488, 686, 854, 890, 1151
AjnI CCWGG 3 cut(s) 132, 1017, 1221
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 3 cut(s) 383, 398, 673
AluI AGCT 3 cut(s) 383, 398, 673
Alw26I GTCTC 2 cut(s) 162, 295
AlwI GGATC 2 cut(s) 58, 804
AoxI GGCC 3 cut(s) 109, 928, 1218
ApeKI GCWGC 3 cut(s) 200, 203, 1022
ApoI RAATTY 4 cut(s) 77, 474, 545, 802
Asp700I GAANNNNTTC 3 cut(s) 77, 438, 828
AspS9I GGNCC 2 cut(s) 614, 1219
AsuHPI GGTGA 1 cut(s) 857
AsuNHI GCTAGC 1 cut(s) 149
AvaII GGWCC 1 cut(s) 614
BaeI ACNNNNGTAYC 2 cut(s) 1173, 1206
BbsI GAAGAC 1 cut(s) 585
BbvI GCAGC 3 cut(s) 187, 190, 1034
BceAI ACGGC 3 cut(s) 180, 213, 943
BciT130I CCWGG 3 cut(s) 134, 1019, 1223
BciVI GTATCC 1 cut(s) 914
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 2 cut(s) 162, 295
BfaI CTAG 4 cut(s) 113, 150, 395, 971
BfuI GTATCC 1 cut(s) 914
BisI GCNGC 4 cut(s) 201, 204, 743, 1023
BlsI GCNGC 4 cut(s) 202, 205, 744, 1024
Bme1390I CCNGG 3 cut(s) 134, 1019, 1223
Bme18I GGWCC 1 cut(s) 614
BmgT120I GGNCC 2 cut(s) 614, 1219
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 3 cut(s) 134, 1019, 1223
BmrI ACTGGG 1 cut(s) 47
BmsI GCATC 2 cut(s) 265, 954
BmtI GCTAGC 1 cut(s) 153
BmuI ACTGGG 1 cut(s) 47
BoxI GACNNNNGTC 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 585
BpmI CTGGAG 1 cut(s) 804
BpuEI CTTGAG 2 cut(s) 645, 925
BsaJI CCNNGG 6 cut(s) 132, 133, 950, 963, 1221, 1246
Bsc4I CCNNNNNNNGG 2 cut(s) 517, 623
Bse1I ACTGG 4 cut(s) 42, 298, 542, 1125
BseBI CCWGG 3 cut(s) 134, 1019, 1223
BseDI CCNNGG 6 cut(s) 132, 133, 950, 963, 1221, 1246
BseGI GGATG 4 cut(s) 655, 945, 960, 1057
BseLI CCNNNNNNNGG 2 cut(s) 517, 623
BseNI ACTGG 4 cut(s) 42, 298, 542, 1125
BseRI GAGGAG 1 cut(s) 807
BseXI GCAGC 3 cut(s) 187, 190, 1034
BseYI CCCAGC 1 cut(s) 379
BshFI GGCC 3 cut(s) 111, 930, 1220
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 2 cut(s) 517, 623
BsmAI GTCTC 2 cut(s) 162, 295
BsmBI CGTCTC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 494
BsnI GGCC 3 cut(s) 111, 930, 1220
Bsp143I GATC 5 cut(s) 63, 124, 727, 809, 1054
Bsp19I CCATGG 2 cut(s) 950, 963
BspACI CCGC 1 cut(s) 743
BspANI GGCC 3 cut(s) 111, 930, 1220
BspLI GGNNCC 1 cut(s) 92
BspOI GCTAGC 1 cut(s) 153
BspPI GGATC 2 cut(s) 58, 804
BsrI ACTGG 4 cut(s) 42, 298, 542, 1125
BssECI CCNNGG 6 cut(s) 132, 133, 950, 963, 1221, 1246
BssMI GATC 5 cut(s) 63, 124, 727, 809, 1054
BssT1I CCWWGG 3 cut(s) 950, 963, 1246
Bst2UI CCWGG 3 cut(s) 134, 1019, 1223
Bst4CI ACNGT 5 cut(s) 173, 192, 763, 845, 1134
BstAPI GCANNNNNTGC 1 cut(s) 1208
BstC8I GCNNGC 5 cut(s) 151, 791, 909, 932, 1126
BstDEI CTNAG 1 cut(s) 634
BstDSI CCRYGG 2 cut(s) 950, 963
BstF5I GGATG 4 cut(s) 655, 945, 960, 1057
BstKTI GATC 5 cut(s) 66, 127, 730, 812, 1057
BstMAI GTCTC 2 cut(s) 162, 295
BstMBI GATC 5 cut(s) 63, 124, 727, 809, 1054
BstMWI GCNNNNNNNGC 3 cut(s) 389, 1208, 1217
BstNI CCWGG 3 cut(s) 134, 1019, 1223
BstNSI RCATGY 4 cut(s) 793, 915, 1128, 1279
BstPAI GACNNNNGTC 1 cut(s) 11
BstSCI CCNGG 3 cut(s) 132, 1017, 1221
BstV1I GCAGC 3 cut(s) 187, 190, 1034
BstV2I GAAGAC 1 cut(s) 585
BstX2I RGATCY 1 cut(s) 809
BstYI RGATCY 1 cut(s) 809
BsuI GTATCC 1 cut(s) 914
BsuRI GGCC 3 cut(s) 111, 930, 1220
BtgI CCRYGG 2 cut(s) 950, 963
BtsCI GGATG 4 cut(s) 655, 945, 960, 1057
BtsI GCAGTG 3 cut(s) 370, 1044, 1081
BtsIMutI CAGTG 5 cut(s) 370, 1044, 1081, 1118, 1139
Cac8I GCNNGC 5 cut(s) 151, 791, 909, 932, 1126
Cfr13I GGNCC 2 cut(s) 614, 1219
CviAII CATG 9 cut(s) 49, 517, 542, 790, 912, 951, 964, 1125, 1276
DdeI CTNAG 1 cut(s) 634
DpnI GATC 5 cut(s) 65, 126, 729, 811, 1056
DpnII GATC 5 cut(s) 63, 124, 727, 809, 1054
DrdI GACNNNNNNGTC 1 cut(s) 1241
DseDI GACNNNNNNGTC 1 cut(s) 1241
EaeI YGGCCR 1 cut(s) 928
Eco130I CCWWGG 3 cut(s) 950, 963, 1246
Eco147I AGGCCT 1 cut(s) 111
Eco32I GATATC 1 cut(s) 1003
Eco47I GGWCC 1 cut(s) 614
Eco57I CTGAAG 4 cut(s) 420, 597, 887, 1017
EcoO109I RGGNCCY 1 cut(s) 614
EcoRII CCWGG 3 cut(s) 132, 1017, 1221
EcoRV GATATC 1 cut(s) 1003
EcoT14I CCWWGG 3 cut(s) 950, 963, 1246
ErhI CCWWGG 3 cut(s) 950, 963, 1246
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 9 cut(s) 52, 520, 545, 793, 915, 954, 967, 1128, 1279
FaqI GGGAC 1 cut(s) 494
FatI CATG 9 cut(s) 48, 516, 541, 789, 911, 950, 963, 1124, 1275
FbaI TGATCA 1 cut(s) 124
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 4 cut(s) 201, 204, 743, 1023
FokI GGATG 4 cut(s) 642, 932, 967, 1044
Fsp4HI GCNGC 4 cut(s) 201, 204, 743, 1023
FspBI CTAG 4 cut(s) 113, 150, 395, 971
GluI GCNGC 4 cut(s) 201, 204, 743, 1023
GsaI CCCAGC 1 cut(s) 383
GsuI CTGGAG 1 cut(s) 804
HaeIII GGCC 3 cut(s) 111, 930, 1220
Hin1II CATG 9 cut(s) 52, 520, 545, 793, 915, 954, 967, 1128, 1279
HincII GTYRAC 2 cut(s) 195, 757
HindII GTYRAC 2 cut(s) 195, 757
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 5 cut(s) 507, 530, 829, 1112, 1235
HphI GGTGA 1 cut(s) 857
Hpy166II GTNNAC 5 cut(s) 195, 422, 653, 711, 757
Hpy188I TCNGA 9 cut(s) 290, 535, 558, 577, 648, 809, 834, 997, 1261
Hpy188III TCNNGA 7 cut(s) 186, 353, 494, 662, 821, 971, 1061
Hpy8I GTNNAC 5 cut(s) 195, 422, 653, 711, 757
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 4, 829, 1024
HpyCH4III ACNGT 5 cut(s) 173, 192, 763, 845, 1134
HpyCH4IV ACGT 1 cut(s) 1065
HpyCH4V TGCA 4 cut(s) 503, 789, 911, 1202
HpyF10VI GCNNNNNNNGC 3 cut(s) 389, 1208, 1217
HpyF3I CTNAG 1 cut(s) 634
HpySE526I ACGT 1 cut(s) 1065
Hsp92II CATG 9 cut(s) 52, 520, 545, 793, 915, 954, 967, 1128, 1279
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 5 cut(s) 63, 124, 727, 809, 1054
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 3 cut(s) 187, 190, 1034
LweI GCATC 2 cut(s) 265, 954
MaeI CTAG 4 cut(s) 113, 150, 395, 971
MaeII ACGT 1 cut(s) 1065
MaeIII GTNAC 2 cut(s) 1076, 1250
MalI GATC 5 cut(s) 65, 126, 729, 811, 1056
MboI GATC 5 cut(s) 63, 124, 727, 809, 1054
MboII GAAGA 7 cut(s) 44, 413, 446, 590, 639, 893, 1010
MflI RGATCY 1 cut(s) 809
MlyI GAGTC 2 cut(s) 516, 1229
MmeI TCCRAC 4 cut(s) 254, 604, 617, 898
MnlI CCTC 6 cut(s) 92, 127, 600, 669, 828, 841
MroXI GAANNNNTTC 3 cut(s) 77, 438, 828
MseI TTAA 4 cut(s) 252, 263, 525, 732
MslI CAYNNNNRTG 1 cut(s) 1123
MspR9I CCNGG 3 cut(s) 134, 1019, 1223
MvaI CCWGG 3 cut(s) 134, 1019, 1223
MwoI GCNNNNNNNGC 3 cut(s) 389, 1208, 1217
NcoI CCATGG 2 cut(s) 950, 963
NdeII GATC 5 cut(s) 63, 124, 727, 809, 1054
NheI GCTAGC 1 cut(s) 149
NlaIII CATG 9 cut(s) 52, 520, 545, 793, 915, 954, 967, 1128, 1279
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 2 cut(s) 1076, 1250
NspI RCATGY 4 cut(s) 793, 915, 1128, 1279
PaeI GCATGC 2 cut(s) 793, 1128
PasI CCCWGGG 1 cut(s) 133
PceI AGGCCT 1 cut(s) 111
PciI ACATGT 1 cut(s) 1275
PdmI GAANNNNTTC 3 cut(s) 77, 438, 828
PfeI GAWTC 3 cut(s) 530, 829, 1112
PflFI GACNNNGTC 1 cut(s) 1067
PkrI GCNGC 4 cut(s) 202, 205, 744, 1024
PleI GAGTC 2 cut(s) 515, 1229
PpsI GAGTC 2 cut(s) 515, 1229
PpuMI RGGWCCY 1 cut(s) 614
PscI ACATGT 1 cut(s) 1275
PshAI GACNNNNGTC 1 cut(s) 11
PsiI TTATAA 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 614
Psp6I CCWGG 3 cut(s) 132, 1017, 1221
PspFI CCCAGC 1 cut(s) 379
PspGI CCWGG 3 cut(s) 132, 1017, 1221
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 2 cut(s) 614, 1219
PspPPI RGGWCCY 1 cut(s) 614
PsuI RGATCY 1 cut(s) 809
PsyI GACNNNGTC 1 cut(s) 1067
RseI CAYNNNNRTG 1 cut(s) 1123
SaqAI TTAA 4 cut(s) 252, 263, 525, 732
SatI GCNGC 4 cut(s) 201, 204, 743, 1023
Sau3AI GATC 5 cut(s) 63, 124, 727, 809, 1054
Sau96I GGNCC 2 cut(s) 614, 1219
SchI GAGTC 2 cut(s) 516, 1229
ScrFI CCNGG 3 cut(s) 134, 1019, 1223
SfaNI GCATC 2 cut(s) 265, 954
SinI GGWCC 1 cut(s) 614
SmiMI CAYNNNNRTG 1 cut(s) 1123
SmlI CTYRAG 2 cut(s) 660, 940
SmoI CTYRAG 2 cut(s) 660, 940
SphI GCATGC 2 cut(s) 793, 1128
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 1 cut(s) 743
SspI AATATT 2 cut(s) 643, 772
SspMI CTAG 4 cut(s) 113, 150, 395, 971
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 3 cut(s) 132, 1017, 1221
StyI CCWWGG 3 cut(s) 950, 963, 1246
TaaI ACNGT 5 cut(s) 173, 192, 763, 845, 1134
TaiI ACGT 1 cut(s) 1068
TaqI TCGA 3 cut(s) 104, 796, 1115
TaqII GACCGA 1 cut(s) 597
TauI GCSGC 1 cut(s) 745
TfiI GAWTC 3 cut(s) 530, 829, 1112
Tru1I TTAA 4 cut(s) 252, 263, 525, 732
Tru9I TTAA 4 cut(s) 252, 263, 525, 732
TscAI CASTG 5 cut(s) 370, 1051, 1081, 1125, 1139
TseFI GTSAC 2 cut(s) 1076, 1250
TseI GCWGC 3 cut(s) 200, 203, 1022
Tsp45I GTSAC 2 cut(s) 1076, 1250
TspDTI ATGAA 7 cut(s) 65, 273, 431, 539, 543, 558, 971
TspRI CASTG 5 cut(s) 370, 1051, 1081, 1125, 1139
Tth111I GACNNNGTC 1 cut(s) 1067
VpaK11BI GGWCC 1 cut(s) 614
XapI RAATTY 4 cut(s) 77, 474, 545, 802
XbaI TCTAGA 1 cut(s) 970
XceI RCATGY 4 cut(s) 793, 915, 1128, 1279
XmiI GTMKAC 1 cut(s) 421
XmnI GAANNNNTTC 3 cut(s) 77, 438, 828
XspI CTAG 4 cut(s) 113, 150, 395, 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.