Rmu_sc0002845.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002845.1
OG0000419
Physical Location & Seq
Reverse (-)
122816 .. 123862
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002845.1_g000026.1.cds

Sequence Viewer

Length: 1047 bp
atggaaaccaaagaaaaaatcctcaaaaggtttctgctaagtcctaaaggactagccacaactgatcaatcccagaaaaaaggattggctagcccgtctcaaacggcaaacggtaaaggctcatcaagaccgttgaaggctgttgctttgccaaaaagcaaaccaactccaactggagttataaatgtttttaattatgaattaagaacctttgatactcttgtattcagaactggcaggagactagcttatcaccagaaaacaatcttggataatttcctttttgcttttcaagaaagaagcagtggtatgatgtttccagccctctttgcacttgctgaggaactttatgaaaatggcagaccacagtttgaagaactccatacacagcagagtgctgtaagaaaagaaaaaattcacttccttgaaagcccagaaagtgctagggtctcgatcatggcactcaatgaatcagattggcatgaattccatagtctgataggaagtcataattcagaagaccgagtttctccaactctctttattattgcagaaccatatgttggaagatacttagtcaatgttcagagtgaacatcctcaagaacacaagatttggcttgttgaaaatggttttgttcataatctgtggactaaaaccaatgatgatcttaaaggtttgcctcctatcattgtcaacacagttaaaaacattagaaagaatgactgtatgcttcgtctgaagttcagatccactcctccagaatggatccagaaggcaaacggtggggttgagtatatttcttcatatcactatgtgagaattattcaaaggaaatatctgcaacccgcctgtgtagggtacaatggccaaccaaactcaagcatcccatggatgaaggccatggctctagaatatatcaagaaaatcatctctgaagatatcaacaataccttcctgacagcaggagaaaaaaccattatcactgcttacgatcatcctgacgtagtcagcagtgacctattcttatctcttaccagaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

39.74

Weight (kDa)

9.25

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 182
AccB7I CCANNNNNTGG 1 cut(s) 563
AciI CCGC 1 cut(s) 849
AclWI GGATC 3 cut(s) 744, 763, 776
AcoI YGGCCR 1 cut(s) 868
AcsI RAATTY 2 cut(s) 414, 485
AcuI CTGAAG 2 cut(s) 761, 957
AdeI CACNNNGTG 1 cut(s) 817
AfaI GTAC 1 cut(s) 863
AfiI CCNNNNNNNGG 2 cut(s) 563, 858
AgsI TTSAA 6 cut(s) 136, 293, 374, 428, 626, 830
AjuI GAANNNNNNNTTGG 6 cut(s) 68, 100, 251, 283, 546, 578
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw26I GTCTC 3 cut(s) 102, 235, 454
AlwI GGATC 3 cut(s) 744, 763, 776
AoxI GGCC 2 cut(s) 868, 900
ApoI RAATTY 2 cut(s) 414, 485
Asp700I GAANNNNTTC 1 cut(s) 414
AsuHPI GGTGA 1 cut(s) 245
AsuNHI GCTAGC 1 cut(s) 89
BaeI ACNNNNGTAYC 2 cut(s) 207, 240
BalI TGGCCA 1 cut(s) 870
BamHI GGATCC 1 cut(s) 768
BbsI GAAGAC 1 cut(s) 525
BbvCI CCTCAGC 1 cut(s) 339
BceAI ACGGC 1 cut(s) 120
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 3 cut(s) 102, 235, 454
BfaI CTAG 5 cut(s) 53, 90, 245, 444, 911
BmiI GGNNCC 1 cut(s) 770
BmsI GCATC 1 cut(s) 894
BmtI GCTAGC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 525
BpmI CTGGAG 2 cut(s) 195, 744
Bpu10I CCTNAGC 1 cut(s) 339
BpuEI CTTGAG 2 cut(s) 585, 865
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 890, 903
Bsc4I CCNNNNNNNGG 2 cut(s) 563, 858
Bse1I ACTGG 2 cut(s) 178, 238
BseDI CCNNGG 2 cut(s) 890, 903
BseGI GGATG 4 cut(s) 595, 885, 900, 997
BseLI CCNNNNNNNGG 2 cut(s) 563, 858
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 2 cut(s) 178, 238
BseRI GAGGAG 1 cut(s) 747
BshFI GGCC 2 cut(s) 870, 902
BslI CCNNNNNNNGG 2 cut(s) 563, 858
BsmAI GTCTC 3 cut(s) 102, 235, 454
BsmBI CGTCTC 1 cut(s) 102
BsnI GGCC 2 cut(s) 870, 902
Bso31I GGTCTC 1 cut(s) 454
Bsp143I GATC 6 cut(s) 64, 453, 667, 749, 768, 994
Bsp19I CCATGG 2 cut(s) 890, 903
BspACI CCGC 1 cut(s) 849
BspANI GGCC 2 cut(s) 870, 902
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 770
BspOI GCTAGC 1 cut(s) 93
BspPI GGATC 3 cut(s) 744, 763, 776
BspTNI GGTCTC 1 cut(s) 454
BsrI ACTGG 2 cut(s) 178, 238
BssECI CCNNGG 2 cut(s) 890, 903
BssMI GATC 6 cut(s) 64, 453, 667, 749, 768, 994
BssT1I CCWWGG 2 cut(s) 890, 903
Bst4CI ACNGT 6 cut(s) 113, 132, 369, 703, 728, 785
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 3 cut(s) 38, 339, 574
BstDSI CCRYGG 2 cut(s) 890, 903
BstF5I GGATG 4 cut(s) 595, 885, 900, 997
BstKTI GATC 6 cut(s) 67, 456, 670, 752, 771, 997
BstMAI GTCTC 3 cut(s) 102, 235, 454
BstMBI GATC 6 cut(s) 64, 453, 667, 749, 768, 994
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstV2I GAAGAC 1 cut(s) 525
BstX2I RGATCY 2 cut(s) 749, 768
BstYI RGATCY 2 cut(s) 749, 768
BsuRI GGCC 2 cut(s) 870, 902
BtgI CCRYGG 2 cut(s) 890, 903
BtsCI GGATG 4 cut(s) 595, 885, 900, 997
BtsI GCAGTG 3 cut(s) 310, 984, 1021
BtsIMutI CAGTG 3 cut(s) 310, 984, 1021
Cac8I GCNNGC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 862
CviAII CATG 4 cut(s) 457, 482, 891, 904
CviQI GTAC 1 cut(s) 862
DdeI CTNAG 3 cut(s) 38, 339, 574
DpnI GATC 6 cut(s) 66, 455, 669, 751, 770, 996
DpnII GATC 6 cut(s) 64, 453, 667, 749, 768, 994
DraIII CACNNNGTG 1 cut(s) 817
EaeI YGGCCR 1 cut(s) 868
Eco130I CCWWGG 2 cut(s) 890, 903
Eco31I GGTCTC 1 cut(s) 454
Eco32I GATATC 1 cut(s) 943
Eco57I CTGAAG 2 cut(s) 761, 957
EcoRI GAATTC 1 cut(s) 485
EcoRV GATATC 1 cut(s) 943
EcoT14I CCWWGG 2 cut(s) 890, 903
ErhI CCWWGG 2 cut(s) 890, 903
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 4 cut(s) 460, 485, 894, 907
FatI CATG 4 cut(s) 456, 481, 890, 903
FauI CCCGC 1 cut(s) 856
FauNDI CATATG 1 cut(s) 559
FbaI TGATCA 1 cut(s) 64
FokI GGATG 4 cut(s) 582, 872, 907, 984
FspBI CTAG 5 cut(s) 53, 90, 245, 444, 911
GsuI CTGGAG 2 cut(s) 195, 744
HaeIII GGCC 2 cut(s) 870, 902
Hin1II CATG 4 cut(s) 460, 485, 894, 907
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HinfI GANTC 1 cut(s) 470
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 3 cut(s) 593, 651, 697
Hpy188I TCNGA 8 cut(s) 230, 475, 498, 517, 588, 741, 749, 937
Hpy8I GTNNAC 3 cut(s) 593, 651, 697
HpyAV CCTTC 4 cut(s) 130, 769, 892, 964
HpyCH4III ACNGT 6 cut(s) 113, 132, 369, 703, 728, 785
HpyCH4IV ACGT 1 cut(s) 1005
HpyCH4V TGCA 3 cut(s) 332, 551, 844
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 3 cut(s) 38, 339, 574
HpySE526I ACGT 1 cut(s) 1005
Hsp92II CATG 4 cut(s) 460, 485, 894, 907
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 6 cut(s) 64, 453, 667, 749, 768, 994
LweI GCATC 1 cut(s) 894
MaeI CTAG 5 cut(s) 53, 90, 245, 444, 911
MaeII ACGT 1 cut(s) 1005
MaeIII GTNAC 1 cut(s) 1016
MalI GATC 6 cut(s) 66, 455, 669, 751, 770, 996
MboI GATC 6 cut(s) 64, 453, 667, 749, 768, 994
MboII GAAGA 5 cut(s) 386, 530, 579, 795, 950
MflI RGATCY 2 cut(s) 749, 768
MlsI TGGCCA 1 cut(s) 870
MluCI AATT 7 cut(s) 193, 200, 274, 414, 485, 511, 822
MluNI TGGCCA 1 cut(s) 870
MmeI TCCRAC 3 cut(s) 194, 544, 557
MnlI CCTC 6 cut(s) 32, 334, 335, 609, 693, 768
Mox20I TGGCCA 1 cut(s) 870
MroXI GAANNNNTTC 1 cut(s) 414
MscI TGGCCA 1 cut(s) 870
MseI TTAA 4 cut(s) 192, 203, 672, 705
Msp20I TGGCCA 1 cut(s) 870
MwoI GCNNNNNNNGC 1 cut(s) 329
NcoI CCATGG 2 cut(s) 890, 903
NdeI CATATG 1 cut(s) 559
NdeII GATC 6 cut(s) 64, 453, 667, 749, 768, 994
NheI GCTAGC 1 cut(s) 89
NlaIII CATG 4 cut(s) 460, 485, 894, 907
NlaIV GGNNCC 1 cut(s) 770
NmuCI GTSAC 1 cut(s) 1016
PdmI GAANNNNTTC 1 cut(s) 414
PfeI GAWTC 1 cut(s) 470
PflFI GACNNNGTC 1 cut(s) 1007
PflMI CCANNNNNTGG 1 cut(s) 563
PsiI TTATAA 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 770
PsrI GAACNNNNNNTAC 2 cut(s) 199, 231
PsuI RGATCY 2 cut(s) 749, 768
PsyI GACNNNGTC 1 cut(s) 1007
RsaI GTAC 1 cut(s) 863
RsaNI GTAC 1 cut(s) 862
SaqAI TTAA 4 cut(s) 192, 203, 672, 705
Sau3AI GATC 6 cut(s) 64, 453, 667, 749, 768, 994
SetI ASST 7 cut(s) 32, 212, 250, 679, 956, 1008, 1023
SfaNI GCATC 1 cut(s) 894
SmlI CTYRAG 2 cut(s) 600, 880
SmoI CTYRAG 2 cut(s) 600, 880
Sse9I AATT 7 cut(s) 193, 200, 274, 414, 485, 511, 822
SsiI CCGC 1 cut(s) 849
SspMI CTAG 5 cut(s) 53, 90, 245, 444, 911
StyI CCWWGG 2 cut(s) 890, 903
TaaI ACNGT 6 cut(s) 113, 132, 369, 703, 728, 785
TaiI ACGT 1 cut(s) 1008
TaqI TCGA 1 cut(s) 452
TaqII GACCGA 1 cut(s) 537
TasI AATT 7 cut(s) 193, 200, 274, 414, 485, 511, 822
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 4 cut(s) 192, 203, 672, 705
Tru9I TTAA 4 cut(s) 192, 203, 672, 705
TscAI CASTG 3 cut(s) 310, 991, 1021
TseFI GTSAC 1 cut(s) 1016
Tsp45I GTSAC 1 cut(s) 1016
TspDTI ATGAA 7 cut(s) 213, 366, 483, 498, 629, 795, 911
TspRI CASTG 3 cut(s) 310, 991, 1021
Tth111I GACNNNGTC 1 cut(s) 1007
Van91I CCANNNNNTGG 1 cut(s) 563
XapI RAATTY 2 cut(s) 414, 485
XbaI TCTAGA 1 cut(s) 910
XmnI GAANNNNTTC 1 cut(s) 414
XspI CTAG 5 cut(s) 53, 90, 245, 444, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.