Rmu_sc0001207.1_g000032

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001207.1
OG0000419
Physical Location & Seq
Forward (+)
122820 .. 123584
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001207.1_g000032.1.cds

Sequence Viewer

Length: 708 bp
atgacactcaatgaatcagactggcatgaattccatagtctgataggaagtcataattctgaggaccgtattcctccaactctcttcattattgcaggaccatttgttggaagatacttagttaatgttcagagtgaacatcctcaagaacacaagctctggcttgttgaaaatgattttgtccataatcaatggactaaaacaaatgatgatctcaaaggcttgccccctatcattgtcaacacagtaaaaaatattagaaaaaatgactgcatgcttcgtctaaagttcaaatccactcctccagaatggatccagaaggcaagctgtgagctcgcctgtgttggttacaatgaccagccaaactcaagcatcccatggatgaaaaccatgactctggaatatatcaaaaagatcatctctgaagatatcaacaataccttcctggcagcaggagaaaaaactatcatcactgcttacgatcatcctgacgtagtcagcagtgacctgttcctatctcttaccagaaaggagatagattcgacactggcatgcttacaatgggtggaaagacttgaaacagacaaccactacaagatgtatgttgatatagatgtcaaagataatgcatcaattgctcgtatggcccaggcagataacgactcgtttgtccttgatcacaattcagaaacagacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

235

Amino Acids

27.07

Weight (kDa)

4.98

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 668
AccB7I CCANNNNNTGG 1 cut(s) 107
AclWI GGATC 2 cut(s) 307, 320
AcsI RAATTY 1 cut(s) 29
AcuI CTGAAG 1 cut(s) 444
AfiI CCNNNNNNNGG 1 cut(s) 107
AflIII ACRYGT 1 cut(s) 702
AgsI TTSAA 3 cut(s) 170, 292, 578
AjnI CCWGG 2 cut(s) 444, 648
AluBI AGCT 3 cut(s) 157, 327, 334
AluI AGCT 3 cut(s) 157, 327, 334
Alw21I GWGCWC 1 cut(s) 336
AlwI GGATC 2 cut(s) 307, 320
AoxI GGCC 1 cut(s) 645
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 29
AspS9I GGNCC 3 cut(s) 64, 98, 646
AvaII GGWCC 2 cut(s) 64, 98
BamHI GGATCC 1 cut(s) 312
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 461
BciT130I CCWGG 2 cut(s) 446, 650
BclI TGATCA 1 cut(s) 676
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
Bme1390I CCNGG 2 cut(s) 446, 650
Bme18I GGWCC 2 cut(s) 64, 98
BmgT120I GGNCC 3 cut(s) 64, 98, 646
BmiI GGNNCC 1 cut(s) 314
BmrFI CCNGG 2 cut(s) 446, 650
BmsI GCATC 2 cut(s) 381, 638
BpmI CTGGAG 1 cut(s) 288
BpuEI CTTGAG 2 cut(s) 129, 352
BsaJI CCNNGG 2 cut(s) 377, 648
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 2 cut(s) 26, 552
BseBI CCWGG 2 cut(s) 446, 650
BseDI CCNNGG 2 cut(s) 377, 648
BseGI GGATG 4 cut(s) 139, 372, 387, 484
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 2 cut(s) 26, 552
BseRI GAGGAG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 461
BshFI GGCC 1 cut(s) 647
BsiHKAI GWGCWC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 107
BsnI GGCC 1 cut(s) 647
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 5 cut(s) 211, 312, 414, 481, 676
Bsp19I CCATGG 1 cut(s) 377
BspANI GGCC 1 cut(s) 647
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 314
BspPI GGATC 2 cut(s) 307, 320
BsrI ACTGG 2 cut(s) 26, 552
BssECI CCNNGG 2 cut(s) 377, 648
BssMI GATC 5 cut(s) 211, 312, 414, 481, 676
BssT1I CCWWGG 1 cut(s) 377
Bst2UI CCWGG 2 cut(s) 446, 650
Bst4CI ACNGT 2 cut(s) 68, 247
Bst6I CTCTTC 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 635
BstC8I GCNNGC 5 cut(s) 224, 275, 325, 336, 553
BstDEI CTNAG 2 cut(s) 60, 118
BstDSI CCRYGG 1 cut(s) 377
BstF5I GGATG 4 cut(s) 139, 372, 387, 484
BstKTI GATC 5 cut(s) 214, 315, 417, 484, 679
BstMBI GATC 5 cut(s) 211, 312, 414, 481, 676
BstMWI GCNNNNNNNGC 2 cut(s) 635, 644
BstNI CCWGG 2 cut(s) 446, 650
BstNSI RCATGY 3 cut(s) 277, 555, 706
BstSCI CCNGG 2 cut(s) 444, 648
BstV1I GCAGC 1 cut(s) 461
BstX2I RGATCY 1 cut(s) 312
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 1 cut(s) 312
BsuRI GGCC 1 cut(s) 647
BtgI CCRYGG 1 cut(s) 377
BtsCI GGATG 4 cut(s) 139, 372, 387, 484
BtsI GCAGTG 2 cut(s) 471, 508
BtsIMutI CAGTG 3 cut(s) 471, 508, 545
Cac8I GCNNGC 5 cut(s) 224, 275, 325, 336, 553
Cfr13I GGNCC 3 cut(s) 64, 98, 646
CviAII CATG 6 cut(s) 26, 274, 378, 391, 552, 703
CviJI RGCY 7 cut(s) 157, 163, 222, 327, 334, 361, 647
CviKI_1 RGCY 7 cut(s) 157, 163, 222, 327, 334, 361, 647
DdeI CTNAG 2 cut(s) 60, 118
DpnI GATC 5 cut(s) 213, 314, 416, 483, 678
DpnII GATC 5 cut(s) 211, 312, 414, 481, 676
DrdI GACNNNNNNGTC 1 cut(s) 668
DseDI GACNNNNNNGTC 1 cut(s) 668
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Ecl136II GAGCTC 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 336
Eco32I GATATC 1 cut(s) 430
Eco47I GGWCC 2 cut(s) 64, 98
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 444
EcoICRI GAGCTC 1 cut(s) 334
EcoRI GAATTC 1 cut(s) 29
EcoRII CCWGG 2 cut(s) 444, 648
EcoRV GATATC 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 377
EcoT22I ATGCAT 1 cut(s) 631
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 6 cut(s) 29, 277, 381, 394, 555, 706
FatI CATG 6 cut(s) 25, 273, 377, 390, 551, 702
FbaI TGATCA 1 cut(s) 676
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 4 cut(s) 126, 359, 394, 471
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 450
GluI GCNGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 1 cut(s) 647
Hin1II CATG 6 cut(s) 29, 277, 381, 394, 555, 706
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 4 cut(s) 14, 394, 539, 662
Hpy166II GTNNAC 2 cut(s) 137, 241
Hpy188I TCNGA 6 cut(s) 19, 42, 61, 132, 424, 688
Hpy188III TCNNGA 5 cut(s) 146, 305, 316, 398, 488
Hpy8I GTNNAC 2 cut(s) 137, 241
HpyAV CCTTC 2 cut(s) 313, 451
HpyCH4III ACNGT 2 cut(s) 68, 247
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 3 cut(s) 95, 273, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 635, 644
HpyF3I CTNAG 2 cut(s) 60, 118
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 6 cut(s) 29, 277, 381, 394, 555, 706
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 5 cut(s) 211, 312, 414, 481, 676
Lsp1109I GCAGC 1 cut(s) 461
LweI GCATC 2 cut(s) 381, 638
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 347, 503
MalI GATC 5 cut(s) 213, 314, 416, 483, 678
MboI GATC 5 cut(s) 211, 312, 414, 481, 676
MboII GAAGA 3 cut(s) 76, 123, 437
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 4 cut(s) 29, 55, 633, 682
MlyI GAGTC 2 cut(s) 388, 656
MmeI TCCRAC 2 cut(s) 88, 101
MnlI CCTC 4 cut(s) 55, 84, 153, 312
Mph1103I ATGCAT 1 cut(s) 631
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 550
MspR9I CCNGG 2 cut(s) 446, 650
MunI CAATTG 1 cut(s) 633
MvaI CCWGG 2 cut(s) 446, 650
MwoI GCNNNNNNNGC 2 cut(s) 635, 644
NcoI CCATGG 1 cut(s) 377
NdeII GATC 5 cut(s) 211, 312, 414, 481, 676
NlaIII CATG 6 cut(s) 29, 277, 381, 394, 555, 706
NlaIV GGNNCC 1 cut(s) 314
NmuCI GTSAC 1 cut(s) 503
NsiI ATGCAT 1 cut(s) 631
NspI RCATGY 3 cut(s) 277, 555, 706
PaeI GCATGC 2 cut(s) 277, 555
PciI ACATGT 1 cut(s) 702
PfeI GAWTC 2 cut(s) 14, 539
PflFI GACNNNGTC 1 cut(s) 494
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 1 cut(s) 451
PleI GAGTC 2 cut(s) 388, 656
PpsI GAGTC 2 cut(s) 388, 656
PscI ACATGT 1 cut(s) 702
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 444, 648
PspGI CCWGG 2 cut(s) 444, 648
PspN4I GGNNCC 1 cut(s) 314
PspPI GGNCC 3 cut(s) 64, 98, 646
PsuI RGATCY 1 cut(s) 312
PsyI GACNNNGTC 1 cut(s) 494
RseI CAYNNNNRTG 1 cut(s) 550
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 5 cut(s) 211, 312, 414, 481, 676
Sau96I GGNCC 3 cut(s) 64, 98, 646
SchI GAGTC 2 cut(s) 388, 656
ScrFI CCNGG 2 cut(s) 446, 650
SduI GDGCHC 1 cut(s) 336
SetI ASST 6 cut(s) 159, 329, 336, 443, 495, 510
SfaNI GCATC 2 cut(s) 381, 638
SinI GGWCC 2 cut(s) 64, 98
SmiMI CAYNNNNRTG 1 cut(s) 550
SmlI CTYRAG 2 cut(s) 144, 367
SmoI CTYRAG 2 cut(s) 144, 367
SphI GCATGC 2 cut(s) 277, 555
Sse9I AATT 4 cut(s) 29, 55, 633, 682
SspI AATATT 1 cut(s) 256
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 444, 648
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 2 cut(s) 68, 247
TaiI ACGT 1 cut(s) 495
TaqI TCGA 1 cut(s) 542
TasI AATT 4 cut(s) 29, 55, 633, 682
TfiI GAWTC 2 cut(s) 14, 539
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 3 cut(s) 478, 508, 552
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 1 cut(s) 449
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 4 cut(s) 27, 42, 76, 398
TspRI CASTG 3 cut(s) 478, 508, 552
Tth111I GACNNNGTC 1 cut(s) 494
Van91I CCANNNNNTGG 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 64, 98
XapI RAATTY 1 cut(s) 29
XceI RCATGY 3 cut(s) 277, 555, 706
Zsp2I ATGCAT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.