Rmu_sc0006937.1_g000004

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006937.1
OG0000419
Physical Location & Seq
Reverse (-)
7846 .. 9219
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006937.1_g000004.1.cds

Sequence Viewer

Length: 918 bp
atgtttagccaaagagatgatgacgaagatcgtaatcccagaagcagaagaaccgggaaagaacacgagcctgaagaggatcccaaaaaaaccaaagaaaaaatcctcaaaaggtttctgctaagtccaaaaggactagccacaactgatcaatcccaggaaagaagcagtggtttgatgtttccagctctctttgccctagctgaagaactctacgaaaatggaagaccacagtttgaagaacttcatacacagcagagaccatatgttggaagatacttagtcaatgttcagagtgaacatcctcaggaacacaagctttggcttgttgaaaatggttttgtccataatctgtggactaaaacaaatgatgatcttaaaggtttgccacctatcattgtcaacacagtcaaaaacattagaaaaaatgactgtatgcttcgtctgaagttcagttccactcctccagaatggatccagaaggcaaacagtgaggttgagtatatttctccatatcattatgtgagaattattcaaaggaaatatctgcagcctgcctgtgttggtttcaatggccaaccaaactcaagcattccatggatgaaatccatgaatttagaatatatcaagaagatcatctctgaagatatcaacaataccttcctggcagcaggagaaaaaactattatcacttcttacaatcatcctgacgtagtcagcagtgacctgttcctatctcttactagaaaagagatagattcgacactggcatgcttacagtgggtagaaagatttgaaacagacaaccactataaaatgtatgttgaagaagacaatgcaacaactgctcgtatggcccaggcagacaacaaatcctttgtccttggccacaattctgaaacagacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

305

Amino Acids

35.52

Weight (kDa)

5.9

Isoelectric Point (pI)

57.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 269
AclWI GGATC 4 cut(s) 74, 87, 469, 482
AcoI YGGCCR 2 cut(s) 574, 886
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 4 cut(s) 93, 225, 467, 663
AfiI CCNNNNNNNGG 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 912
AgsI TTSAA 6 cut(s) 239, 332, 536, 571, 797, 827
AjnI CCWGG 3 cut(s) 156, 663, 858
AluBI AGCT 3 cut(s) 188, 203, 319
AluI AGCT 3 cut(s) 188, 203, 319
Alw26I GTCTC 1 cut(s) 253
AlwI GGATC 4 cut(s) 74, 87, 469, 482
AoxI GGCC 3 cut(s) 574, 855, 886
ApeKI GCWGC 2 cut(s) 550, 668
ApoI RAATTY 1 cut(s) 613
ArsI GACNNNNNNTTYG 2 cut(s) 864, 896
Asp700I GAANNNNTTC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 856
AsuC2I CCSGG 1 cut(s) 55
AxyI CCTNAGG 1 cut(s) 306
BalI TGGCCA 2 cut(s) 576, 888
BamHI GGATCC 2 cut(s) 79, 474
BauI CACGAG 1 cut(s) 65
BbsI GAAGAC 2 cut(s) 232, 837
BbvI GCAGC 2 cut(s) 562, 680
BciT130I CCWGG 3 cut(s) 158, 665, 860
BclI TGATCA 1 cut(s) 148
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 3 cut(s) 137, 200, 744
BfmI CTRYAG 1 cut(s) 548
BisI GCNGC 2 cut(s) 551, 669
BlsI GCNGC 2 cut(s) 552, 670
Bme1390I CCNGG 4 cut(s) 55, 158, 665, 860
BmgT120I GGNCC 1 cut(s) 856
BmiI GGNNCC 2 cut(s) 81, 476
BmrFI CCNGG 4 cut(s) 55, 158, 665, 860
BpiI GAAGAC 2 cut(s) 232, 837
BpmI CTGGAG 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 571
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 4 cut(s) 156, 596, 858, 883
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 771
Bse21I CCTNAGG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 33
BseBI CCWGG 3 cut(s) 158, 665, 860
BseDI CCNNGG 4 cut(s) 156, 596, 858, 883
BseGI GGATG 3 cut(s) 301, 606, 703
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 771
BseRI GAGGAG 1 cut(s) 453
BseXI GCAGC 2 cut(s) 562, 680
BshFI GGCC 3 cut(s) 576, 857, 888
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 253
BsmI GAATGC 1 cut(s) 591
BsnI GGCC 3 cut(s) 576, 857, 888
Bso31I GGTCTC 1 cut(s) 253
Bsp143I GATC 6 cut(s) 28, 79, 148, 373, 474, 633
Bsp19I CCATGG 1 cut(s) 596
BspANI GGCC 3 cut(s) 576, 857, 888
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 2 cut(s) 81, 476
BspMAI CTGCAG 1 cut(s) 552
BspPI GGATC 4 cut(s) 74, 87, 469, 482
BspTNI GGTCTC 1 cut(s) 253
BsrI ACTGG 1 cut(s) 771
BssECI CCNNGG 4 cut(s) 156, 596, 858, 883
BssMI GATC 6 cut(s) 28, 79, 148, 373, 474, 633
BssSI CACGAG 1 cut(s) 65
BssT1I CCWWGG 2 cut(s) 596, 883
Bst2BI CACGAG 1 cut(s) 65
Bst2UI CCWGG 3 cut(s) 158, 665, 860
Bst4CI ACNGT 5 cut(s) 234, 409, 434, 491, 780
Bst6I CTCTTC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 845
BstC8I GCNNGC 2 cut(s) 555, 772
BstDEI CTNAG 3 cut(s) 122, 280, 306
BstDSI CCRYGG 1 cut(s) 596
BstF5I GGATG 3 cut(s) 301, 606, 703
BstKTI GATC 6 cut(s) 31, 82, 151, 376, 477, 636
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 6 cut(s) 28, 79, 148, 373, 474, 633
BstMWI GCNNNNNNNGC 3 cut(s) 194, 845, 854
BstNI CCWGG 3 cut(s) 158, 665, 860
BstNSI RCATGY 2 cut(s) 774, 916
BstSCI CCNGG 4 cut(s) 53, 156, 663, 858
BstSFI CTRYAG 1 cut(s) 548
BstV1I GCAGC 2 cut(s) 562, 680
BstV2I GAAGAC 2 cut(s) 232, 837
BstX2I RGATCY 2 cut(s) 79, 474
BstYI RGATCY 2 cut(s) 79, 474
Bsu36I CCTNAGG 1 cut(s) 306
BsuRI GGCC 3 cut(s) 576, 857, 888
BtgI CCRYGG 1 cut(s) 596
BtsCI GGATG 3 cut(s) 301, 606, 703
BtsI GCAGTG 2 cut(s) 175, 727
BtsIMutI CAGTG 5 cut(s) 175, 496, 727, 764, 785
Cac8I GCNNGC 2 cut(s) 555, 772
Cfr13I GGNCC 1 cut(s) 856
CviAII CATG 4 cut(s) 597, 610, 771, 913
DdeI CTNAG 3 cut(s) 122, 280, 306
DpnI GATC 6 cut(s) 30, 81, 150, 375, 476, 635
DpnII GATC 6 cut(s) 28, 79, 148, 373, 474, 633
EaeI YGGCCR 2 cut(s) 574, 886
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 596, 883
Eco31I GGTCTC 1 cut(s) 253
Eco32I GATATC 1 cut(s) 649
Eco57I CTGAAG 4 cut(s) 93, 225, 467, 663
Eco81I CCTNAGG 1 cut(s) 306
EcoRII CCWGG 3 cut(s) 156, 663, 858
EcoRV GATATC 1 cut(s) 649
EcoT14I CCWWGG 2 cut(s) 596, 883
ErhI CCWWGG 2 cut(s) 596, 883
FaeI CATG 4 cut(s) 600, 613, 774, 916
FatI CATG 4 cut(s) 596, 609, 770, 912
FauNDI CATATG 1 cut(s) 265
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 551, 669
FokI GGATG 3 cut(s) 288, 613, 690
Fsp4HI GCNGC 2 cut(s) 551, 669
FspBI CTAG 3 cut(s) 137, 200, 744
GluI GCNGC 2 cut(s) 551, 669
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 3 cut(s) 576, 857, 888
HapII CCGG 1 cut(s) 54
Hin1II CATG 4 cut(s) 600, 613, 774, 916
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 1 cut(s) 758
HpaII CCGG 1 cut(s) 54
Hpy166II GTNNAC 3 cut(s) 299, 357, 403
Hpy188I TCNGA 4 cut(s) 294, 447, 643, 898
Hpy188III TCNNGA 5 cut(s) 308, 467, 478, 628, 707
Hpy8I GTNNAC 3 cut(s) 299, 357, 403
HpyAV CCTTC 2 cut(s) 475, 670
HpyCH4III ACNGT 5 cut(s) 234, 409, 434, 491, 780
HpyCH4IV ACGT 1 cut(s) 711
HpyCH4V TGCA 2 cut(s) 550, 839
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 845, 854
HpyF3I CTNAG 3 cut(s) 122, 280, 306
HpySE526I ACGT 1 cut(s) 711
Hsp92II CATG 4 cut(s) 600, 613, 774, 916
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 6 cut(s) 28, 79, 148, 373, 474, 633
Lsp1109I GCAGC 2 cut(s) 562, 680
MaeI CTAG 3 cut(s) 137, 200, 744
MaeII ACGT 1 cut(s) 711
MaeIII GTNAC 1 cut(s) 722
MalI GATC 6 cut(s) 30, 81, 150, 375, 476, 635
MboI GATC 6 cut(s) 28, 79, 148, 373, 474, 633
MflI RGATCY 2 cut(s) 79, 474
MlsI TGGCCA 2 cut(s) 576, 888
MluCI AATT 3 cut(s) 528, 613, 892
MluNI TGGCCA 2 cut(s) 576, 888
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 5 cut(s) 70, 116, 315, 474, 487
Mox20I TGGCCA 2 cut(s) 576, 888
MroXI GAANNNNTTC 1 cut(s) 243
MscI TGGCCA 2 cut(s) 576, 888
MseI TTAA 1 cut(s) 378
MslI CAYNNNNRTG 1 cut(s) 769
Msp20I TGGCCA 2 cut(s) 576, 888
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 4 cut(s) 55, 158, 665, 860
Mva1269I GAATGC 1 cut(s) 591
MvaI CCWGG 3 cut(s) 158, 665, 860
MwoI GCNNNNNNNGC 3 cut(s) 194, 845, 854
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 596
NdeI CATATG 1 cut(s) 265
NdeII GATC 6 cut(s) 28, 79, 148, 373, 474, 633
NlaIII CATG 4 cut(s) 600, 613, 774, 916
NlaIV GGNNCC 2 cut(s) 81, 476
NmuCI GTSAC 1 cut(s) 722
NspI RCATGY 2 cut(s) 774, 916
PaeI GCATGC 1 cut(s) 774
PciI ACATGT 1 cut(s) 912
PctI GAATGC 1 cut(s) 591
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 758
PflFI GACNNNGTC 1 cut(s) 713
PflMI CCANNNNNTGG 1 cut(s) 269
PkrI GCNGC 2 cut(s) 552, 670
PscI ACATGT 1 cut(s) 912
Psp6I CCWGG 3 cut(s) 156, 663, 858
PspGI CCWGG 3 cut(s) 156, 663, 858
PspN4I GGNNCC 2 cut(s) 81, 476
PspPI GGNCC 1 cut(s) 856
PstI CTGCAG 1 cut(s) 552
PsuI RGATCY 2 cut(s) 79, 474
PsyI GACNNNGTC 1 cut(s) 713
RseI CAYNNNNRTG 1 cut(s) 769
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 2 cut(s) 551, 669
Sau3AI GATC 6 cut(s) 28, 79, 148, 373, 474, 633
Sau96I GGNCC 1 cut(s) 856
ScrFI CCNGG 4 cut(s) 55, 158, 665, 860
SfcI CTRYAG 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 769
SmlI CTYRAG 1 cut(s) 586
SmoI CTYRAG 1 cut(s) 586
SphI GCATGC 1 cut(s) 774
Sse9I AATT 3 cut(s) 528, 613, 892
SspMI CTAG 3 cut(s) 137, 200, 744
StyD4I CCNGG 4 cut(s) 53, 156, 663, 858
StyI CCWWGG 2 cut(s) 596, 883
TaaI ACNGT 5 cut(s) 234, 409, 434, 491, 780
TaiI ACGT 1 cut(s) 714
TaqI TCGA 1 cut(s) 761
TasI AATT 3 cut(s) 528, 613, 892
TfiI GAWTC 1 cut(s) 758
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 5 cut(s) 175, 496, 727, 771, 785
TseFI GTSAC 1 cut(s) 722
TseI GCWGC 2 cut(s) 550, 668
Tsp45I GTSAC 1 cut(s) 722
TspDTI ATGAA 3 cut(s) 236, 617, 626
TspRI CASTG 5 cut(s) 175, 496, 727, 771, 785
Tth111I GACNNNGTC 1 cut(s) 713
Van91I CCANNNNNTGG 1 cut(s) 269
XapI RAATTY 1 cut(s) 613
XceI RCATGY 2 cut(s) 774, 916
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 3 cut(s) 137, 200, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.