Rmu_sc0006695.1_g000070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006695.1
OG0000419
Physical Location & Seq
Reverse (-)
291996 .. 292751
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006695.1_g000070.1.cds

Sequence Viewer

Length: 756 bp
atgtccccggctttgttcgcattagctgtagaactccatgaaaatgctagaccacagcatgaagaagttcaacagagtgctgttaaaagtgaaaaaattcactatcttgaagatccagaaagtgctagagctcccatcatagcactaaaagaatcagattggtttgaattccatagtctgattggaagccataattctgaggactgtattcctccaaccctcttcattgttgcaggaccttatgttggaaggtacggagttaatgttcagagtgaacatcctcaagaacacaagctttggcttgttgaaaatggttttgtccataatctatggactaaaacaaatgatgatctcaaagccctgccccctatcatcgtcaacacagtcaaaaatgtcagaaaaaatgactgtactcttcgactgaagttcagatctactgcactagaatggattcacaaaatgaatggtgaagttgaatacatttctccttatcattatgtgagaattattcaaaaaagatatcttcagcccgcctgtgttggatacaatggccagccaaattcaagtatcccatggatgaaggccatgtctcttgaatacattaagaagatcatccaagaagatacaagaaataccttcctggcagcaggagaaaaaacaataatcactgcttatgattatcctgaagcaatcagcagtgacctcttcatatctctcacaaagaaagagatagattcgacactggcatgcttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

28.7

Weight (kDa)

6.06

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 531
AclWI GGATC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 550
AcsI RAATTY 3 cut(s) 96, 167, 559
AcuI CTGAAG 3 cut(s) 443, 509, 705
AfaI GTAC 2 cut(s) 254, 412
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 8 cut(s) 71, 110, 167, 308, 476, 512, 564, 596
AjnI CCWGG 1 cut(s) 639
AloI GAACNNNNNNTCC 2 cut(s) 249, 281
AluBI AGCT 3 cut(s) 26, 131, 295
AluI AGCT 3 cut(s) 26, 131, 295
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 1 cut(s) 107
AoxI GGCC 2 cut(s) 550, 582
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 3 cut(s) 96, 167, 559
Asp700I GAANNNNTTC 3 cut(s) 66, 96, 450
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 479
AvaII GGWCC 1 cut(s) 236
BalI TGGCCA 1 cut(s) 552
BanII GRGCYC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 656
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 641
BciVI GTATCC 2 cut(s) 536, 578
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 1 cut(s) 594
BfaI CTAG 3 cut(s) 48, 126, 443
BfmI CTRYAG 1 cut(s) 27
BfuI GTATCC 2 cut(s) 536, 578
BglII AGATCT 1 cut(s) 431
BisI GCNGC 1 cut(s) 645
BlsI GCNGC 1 cut(s) 646
Bme1390I CCNGG 2 cut(s) 8, 641
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmrFI CCNGG 2 cut(s) 8, 641
BpuEI CTTGAG 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 6, 572
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 747
BseBI CCWGG 1 cut(s) 641
BseDI CCNNGG 2 cut(s) 6, 572
BseGI GGATG 3 cut(s) 277, 582, 612
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 747
BseXI GCAGC 1 cut(s) 656
BsgI GTGCAG 1 cut(s) 423
BshFI GGCC 2 cut(s) 552, 584
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 594
BsnI GGCC 2 cut(s) 552, 584
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 4 cut(s) 112, 349, 431, 609
Bsp19I CCATGG 1 cut(s) 572
BspACI CCGC 1 cut(s) 531
BspANI GGCC 2 cut(s) 552, 584
BspCNI CTCAG 1 cut(s) 190
BspPI GGATC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 747
BssECI CCNNGG 2 cut(s) 6, 572
BssMI GATC 4 cut(s) 112, 349, 431, 609
BssT1I CCWWGG 1 cut(s) 572
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 3 cut(s) 206, 385, 410
Bst6I CTCTTC 3 cut(s) 227, 420, 710
BstC8I GCNNGC 3 cut(s) 531, 554, 748
BstDEI CTNAG 1 cut(s) 198
BstDSI CCRYGG 1 cut(s) 572
BstF5I GGATG 3 cut(s) 277, 582, 612
BstKTI GATC 4 cut(s) 115, 352, 434, 612
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 4 cut(s) 112, 349, 431, 609
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 641
BstNSI RCATGY 1 cut(s) 750
BstSCI CCNGG 2 cut(s) 6, 639
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 656
BstX2I RGATCY 2 cut(s) 112, 431
BstYI RGATCY 2 cut(s) 112, 431
BsuI GTATCC 2 cut(s) 536, 578
BsuRI GGCC 2 cut(s) 552, 584
BtgI CCRYGG 1 cut(s) 572
BtsCI GGATG 3 cut(s) 277, 582, 612
BtsI GCAGTG 2 cut(s) 666, 703
BtsIMutI CAGTG 3 cut(s) 666, 703, 740
Cac8I GCNNGC 3 cut(s) 531, 554, 748
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 2 cut(s) 253, 411
CviAII CATG 5 cut(s) 38, 59, 573, 586, 747
CviQI GTAC 2 cut(s) 253, 411
DdeI CTNAG 1 cut(s) 198
DpnI GATC 4 cut(s) 114, 351, 433, 611
DpnII GATC 4 cut(s) 112, 349, 431, 609
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 3 cut(s) 227, 420, 710
EarI CTCTTC 3 cut(s) 227, 420, 710
Ecl136II GAGCTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 572
Eco24I GRGCYC 1 cut(s) 133
Eco32I GATATC 1 cut(s) 521
Eco47I GGWCC 1 cut(s) 236
Eco53kI GAGCTC 1 cut(s) 131
Eco57I CTGAAG 3 cut(s) 443, 509, 705
EcoICRI GAGCTC 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 639
EcoRV GATATC 1 cut(s) 521
EcoT14I CCWWGG 1 cut(s) 572
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 572
FaeI CATG 5 cut(s) 41, 62, 576, 589, 750
FatI CATG 5 cut(s) 37, 58, 572, 585, 746
FauI CCCGC 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 645
FokI GGATG 3 cut(s) 264, 589, 599
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 645
FspBI CTAG 3 cut(s) 48, 126, 443
GluI GCNGC 1 cut(s) 645
HaeIII GGCC 2 cut(s) 552, 584
HapII CCGG 1 cut(s) 8
Hin1II CATG 5 cut(s) 41, 62, 576, 589, 750
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 3 cut(s) 152, 451, 734
HpaII CCGG 1 cut(s) 8
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 2 cut(s) 275, 379
Hpy188I TCNGA 6 cut(s) 157, 180, 199, 270, 398, 431
Hpy188III TCNNGA 5 cut(s) 107, 116, 284, 593, 683
Hpy8I GTNNAC 2 cut(s) 275, 379
HpyAV CCTTC 3 cut(s) 243, 574, 646
HpyCH4III ACNGT 3 cut(s) 206, 385, 410
HpyCH4V TGCA 2 cut(s) 233, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 5 cut(s) 41, 62, 576, 589, 750
Kzo9I GATC 4 cut(s) 112, 349, 431, 609
LmnI GCTCC 1 cut(s) 136
Lsp1109I GCAGC 1 cut(s) 656
MaeI CTAG 3 cut(s) 48, 126, 443
MaeIII GTNAC 1 cut(s) 698
MalI GATC 4 cut(s) 114, 351, 433, 611
MboI GATC 4 cut(s) 112, 349, 431, 609
MboII GAAGA 8 cut(s) 74, 122, 214, 407, 515, 619, 632, 697
MflI RGATCY 2 cut(s) 112, 431
MhlI GDGCHC 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 552
MluCI AATT 5 cut(s) 96, 167, 193, 504, 559
MluNI TGGCCA 1 cut(s) 552
MmeI TCCRAC 3 cut(s) 226, 239, 520
MnlI CCTC 5 cut(s) 193, 222, 230, 291, 713
Mox20I TGGCCA 1 cut(s) 552
MroXI GAANNNNTTC 3 cut(s) 66, 96, 450
MscI TGGCCA 1 cut(s) 552
MseI TTAA 3 cut(s) 84, 261, 603
MslI CAYNNNNRTG 3 cut(s) 42, 445, 745
Msp20I TGGCCA 1 cut(s) 552
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 2 cut(s) 8, 641
MvaI CCWGG 1 cut(s) 641
MwoI GCNNNNNNNGC 1 cut(s) 17
NciI CCSGG 1 cut(s) 8
NcoI CCATGG 1 cut(s) 572
NdeII GATC 4 cut(s) 112, 349, 431, 609
NlaIII CATG 5 cut(s) 41, 62, 576, 589, 750
NmuCI GTSAC 1 cut(s) 698
NspI RCATGY 1 cut(s) 750
PaeI GCATGC 1 cut(s) 750
PdmI GAANNNNTTC 3 cut(s) 66, 96, 450
PfeI GAWTC 3 cut(s) 152, 451, 734
PkrI GCNGC 1 cut(s) 646
PpuMI RGGWCCY 1 cut(s) 236
Psp124BI GAGCTC 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 639
PspGI CCWGG 1 cut(s) 639
PspPI GGNCC 1 cut(s) 236
PspPPI RGGWCCY 1 cut(s) 236
PsuI RGATCY 2 cut(s) 112, 431
RsaI GTAC 2 cut(s) 254, 412
RsaNI GTAC 2 cut(s) 253, 411
RseI CAYNNNNRTG 3 cut(s) 42, 445, 745
SacI GAGCTC 1 cut(s) 133
SaqAI TTAA 3 cut(s) 84, 261, 603
SatI GCNGC 1 cut(s) 645
Sau3AI GATC 4 cut(s) 112, 349, 431, 609
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 2 cut(s) 8, 641
SduI GDGCHC 1 cut(s) 133
SetI ASST 7 cut(s) 28, 133, 241, 254, 297, 638, 705
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 3 cut(s) 42, 445, 745
SmlI CTYRAG 1 cut(s) 282
SmoI CTYRAG 1 cut(s) 282
SphI GCATGC 1 cut(s) 750
Sse9I AATT 5 cut(s) 96, 167, 193, 504, 559
SsiI CCGC 1 cut(s) 531
SspMI CTAG 3 cut(s) 48, 126, 443
SstI GAGCTC 1 cut(s) 133
StyD4I CCNGG 2 cut(s) 6, 639
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 3 cut(s) 206, 385, 410
TaqI TCGA 2 cut(s) 418, 737
TasI AATT 5 cut(s) 96, 167, 193, 504, 559
TatI WGTACW 1 cut(s) 410
TfiI GAWTC 3 cut(s) 152, 451, 734
Tru1I TTAA 3 cut(s) 84, 261, 603
Tru9I TTAA 3 cut(s) 84, 261, 603
TscAI CASTG 3 cut(s) 673, 703, 747
TseFI GTSAC 1 cut(s) 698
TseI GCWGC 1 cut(s) 644
Tsp45I GTSAC 1 cut(s) 698
TspDTI ATGAA 6 cut(s) 54, 75, 214, 476, 593, 697
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 3 cut(s) 673, 703, 747
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 3 cut(s) 96, 167, 559
XceI RCATGY 1 cut(s) 750
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XmnI GAANNNNTTC 3 cut(s) 66, 96, 450
XspI CTAG 3 cut(s) 48, 126, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.