Rmu_sc0015191.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015191.1
OG0000419
Physical Location & Seq
Reverse (-)
1278 .. 1790
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015191.1_g000001.1.cds

Sequence Viewer

Length: 513 bp
atgtcacttaatgaatcagactggcatgaatttcatagtctgataggaagtcataattctgaagaccgagttcctccaactcactttatcattgcagggccatatgttggaagatacttagtcaatgttcagaatgaacatcctcaagaacacaagctttggcttgttgaaaatggttttgtccataatctgtggactaaaacaaatgatgatcttaaaggtttgccacatatcattgtcaacacagtcaaaagtattagaaaaaatgattgtatgcttcatctgaagttcagattcactcctctagaatggatccagaaggcaaacggtgaggttgagtatatttctccatatcattatgtgagagttattcaaaagaaatatctgcaacctgcctgtgttagttacaatggccaaccaaactcaagaattccatggatgaaagccatgactttagaatatatcaagaagatcatctctgaagatatcaacaataccttcctggcagcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.93

Weight (kDa)

7.84

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 400
AccB7I CCANNNNNTGG 1 cut(s) 107
AclWI GGATC 2 cut(s) 307, 320
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 2 cut(s) 29, 429
AcuI CTGAAG 3 cut(s) 81, 305, 501
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 2 cut(s) 170, 374
AjnI CCWGG 1 cut(s) 501
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
AlwI GGATC 2 cut(s) 307, 320
AoxI GGCC 2 cut(s) 98, 412
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 2 cut(s) 29, 429
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 341
BalI TGGCCA 1 cut(s) 414
BamHI GGATCC 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 503
BfaI CTAG 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 400
BisI GCNGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 508
Bme1390I CCNGG 1 cut(s) 503
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 314
BmrFI CCNGG 1 cut(s) 503
BpiI GAAGAC 1 cut(s) 69
BpuEI CTTGAG 2 cut(s) 129, 409
BsaJI CCNNGG 1 cut(s) 434
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 503
BseDI CCNNGG 1 cut(s) 434
BseGI GGATG 2 cut(s) 139, 444
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 291
BshFI GGCC 2 cut(s) 100, 414
BslI CCNNNNNNNGG 1 cut(s) 107
BsnI GGCC 2 cut(s) 100, 414
Bsp143I GATC 3 cut(s) 211, 312, 471
Bsp19I CCATGG 1 cut(s) 434
BspANI GGCC 2 cut(s) 100, 414
BspLI GGNNCC 1 cut(s) 314
BspMI ACCTGC 1 cut(s) 400
BspPI GGATC 2 cut(s) 307, 320
BsrDI GCAATG 1 cut(s) 90
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 434
BssMI GATC 3 cut(s) 211, 312, 471
BssT1I CCWWGG 1 cut(s) 434
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 2 cut(s) 247, 329
BstDEI CTNAG 1 cut(s) 118
BstDSI CCRYGG 1 cut(s) 434
BstF5I GGATG 2 cut(s) 139, 444
BstKTI GATC 3 cut(s) 214, 315, 474
BstMBI GATC 3 cut(s) 211, 312, 471
BstNI CCWGG 1 cut(s) 503
BstSCI CCNGG 1 cut(s) 501
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BsuRI GGCC 2 cut(s) 100, 414
BtgI CCRYGG 1 cut(s) 434
BtsCI GGATG 2 cut(s) 139, 444
BveI ACCTGC 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 98
CviAII CATG 4 cut(s) 26, 435, 448, 510
CviJI RGCY 5 cut(s) 100, 157, 163, 414, 446
CviKI_1 RGCY 5 cut(s) 100, 157, 163, 414, 446
DdeI CTNAG 1 cut(s) 118
DpnI GATC 3 cut(s) 213, 314, 473
DpnII GATC 3 cut(s) 211, 312, 471
EaeI YGGCCR 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 434
Eco32I GATATC 1 cut(s) 487
Eco57I CTGAAG 3 cut(s) 81, 305, 501
EcoRI GAATTC 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 501
EcoRV GATATC 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 434
FaeI CATG 4 cut(s) 29, 438, 451, 513
FatI CATG 4 cut(s) 25, 434, 447, 509
FauNDI CATATG 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 507
FokI GGATG 2 cut(s) 126, 451
Fsp4HI GCNGC 1 cut(s) 507
FspBI CTAG 1 cut(s) 305
GluI GCNGC 1 cut(s) 507
HaeIII GGCC 2 cut(s) 100, 414
Hin1II CATG 4 cut(s) 29, 438, 451, 513
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 2 cut(s) 14, 294
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 2 cut(s) 195, 241
Hpy188I TCNGA 7 cut(s) 19, 42, 61, 132, 285, 293, 481
Hpy188III TCNNGA 5 cut(s) 146, 305, 316, 426, 466
Hpy8I GTNNAC 2 cut(s) 195, 241
HpyAV CCTTC 2 cut(s) 313, 508
HpyCH4III ACNGT 2 cut(s) 247, 329
HpyCH4V TGCA 2 cut(s) 95, 388
HpyF3I CTNAG 1 cut(s) 118
Hsp92II CATG 4 cut(s) 29, 438, 451, 513
Kzo9I GATC 3 cut(s) 211, 312, 471
LpnPI CCDG 6 cut(s) 7, 81, 329, 405, 409, 488
MaeI CTAG 1 cut(s) 305
MaeIII GTNAC 2 cut(s) 3, 404
MalI GATC 3 cut(s) 213, 314, 473
MboI GATC 3 cut(s) 211, 312, 471
MboII GAAGA 4 cut(s) 74, 123, 481, 494
MflI RGATCY 1 cut(s) 312
MlsI TGGCCA 1 cut(s) 414
MluCI AATT 3 cut(s) 29, 55, 429
MluNI TGGCCA 1 cut(s) 414
MmeI TCCRAC 2 cut(s) 88, 101
MnlI CCTC 4 cut(s) 84, 153, 312, 325
Mox20I TGGCCA 1 cut(s) 414
MscI TGGCCA 1 cut(s) 414
MseI TTAA 2 cut(s) 9, 216
Msp20I TGGCCA 1 cut(s) 414
MspR9I CCNGG 1 cut(s) 503
MvaI CCWGG 1 cut(s) 503
NcoI CCATGG 1 cut(s) 434
NdeI CATATG 1 cut(s) 103
NdeII GATC 3 cut(s) 211, 312, 471
NlaIII CATG 4 cut(s) 29, 438, 451, 513
NlaIV GGNNCC 1 cut(s) 314
NmuCI GTSAC 1 cut(s) 3
PfeI GAWTC 2 cut(s) 14, 294
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 501
PspGI CCWGG 1 cut(s) 501
PspN4I GGNNCC 1 cut(s) 314
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 312
SaqAI TTAA 2 cut(s) 9, 216
SatI GCNGC 1 cut(s) 507
Sau3AI GATC 3 cut(s) 211, 312, 471
Sau96I GGNCC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 503
SetI ASST 5 cut(s) 159, 223, 336, 394, 500
SmlI CTYRAG 2 cut(s) 144, 424
SmoI CTYRAG 2 cut(s) 144, 424
Sse9I AATT 3 cut(s) 29, 55, 429
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 501
StyI CCWWGG 1 cut(s) 434
TaaI ACNGT 2 cut(s) 247, 329
TaqII GACCGA 1 cut(s) 81
TasI AATT 3 cut(s) 29, 55, 429
TfiI GAWTC 2 cut(s) 14, 294
Tru1I TTAA 2 cut(s) 9, 216
Tru9I TTAA 2 cut(s) 9, 216
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 6 cut(s) 23, 27, 42, 150, 269, 455
Van91I CCANNNNNTGG 1 cut(s) 107
XapI RAATTY 2 cut(s) 29, 429
XbaI TCTAGA 1 cut(s) 304
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.