Rmu_sc0003936.1_g000036

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003936.1
OG0000419
Physical Location & Seq
Forward (+)
153544 .. 154035
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003936.1_g000036.1.cds

Sequence Viewer

Length: 492 bp
atgcttcgtctgaagttcagatccactcctcctgaatggatccaaaaggcaaacggtaaggttgagtatatttctccatatcactatgtgagaattattcaaagaaaatatcttcagtctgcctgtgttaggtacaatagccagccaaactcaagcatcccatggatgaaagccatggccctcgaatatatcaagaagatcatctcagaaaatactaacaataccttcctggcagcaggagaaaaaactattattactgcttacgatcatcatgacgtagtcagcagtgacctattcctatctctcaccagaaaagagatagattcgacactggcatgcttacagtgggttgaaagacttgaaaacgacacccactacaaaatgtatgttgatacagatgtcgaagataatgcaacaactactcgcatggcccaggcagacaacaactcctttgtctttggccacaattctgaaacaaacaagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

163

Amino Acids

18.97

Weight (kDa)

6.96

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 15, 34, 47
AcoI YGGCCR 1 cut(s) 460
AcuI CTGAAG 2 cut(s) 32, 98
AdeI CACNNNGTG 1 cut(s) 88
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 129
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 3 cut(s) 101, 353, 362
AjnI CCWGG 2 cut(s) 228, 432
AlwI GGATC 3 cut(s) 15, 34, 47
AoxI GGCC 3 cut(s) 177, 429, 460
ApeKI GCWGC 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 178, 430
AsuHPI GGTGA 1 cut(s) 298
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BalI TGGCCA 1 cut(s) 462
BamHI GGATCC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 245
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 2 cut(s) 230, 434
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 2 cut(s) 230, 434
BmgT120I GGNCC 2 cut(s) 178, 430
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 2 cut(s) 230, 434
BmsI GCATC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 136
BsaJI CCNNGG 3 cut(s) 161, 174, 432
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 336
BseBI CCWGG 2 cut(s) 230, 434
BseDI CCNNGG 3 cut(s) 161, 174, 432
BseGI GGATG 2 cut(s) 156, 171
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 245
BshFI GGCC 3 cut(s) 179, 431, 462
BslI CCNNNNNNNGG 1 cut(s) 129
BsnI GGCC 3 cut(s) 179, 431, 462
Bsp143I GATC 4 cut(s) 20, 39, 198, 265
Bsp19I CCATGG 2 cut(s) 161, 174
BspANI GGCC 3 cut(s) 179, 431, 462
BspCNI CTCAG 1 cut(s) 218
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 41
BspPI GGATC 3 cut(s) 15, 34, 47
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 3 cut(s) 161, 174, 432
BssMI GATC 4 cut(s) 20, 39, 198, 265
BssT1I CCWWGG 2 cut(s) 161, 174
Bst2UI CCWGG 2 cut(s) 230, 434
Bst4CI ACNGT 2 cut(s) 56, 345
BstC8I GCNNGC 2 cut(s) 143, 337
BstDEI CTNAG 1 cut(s) 205
BstDSI CCRYGG 2 cut(s) 161, 174
BstENI CCTNNNNNAGG 1 cut(s) 127
BstF5I GGATG 2 cut(s) 156, 171
BstKTI GATC 4 cut(s) 23, 42, 201, 268
BstMBI GATC 4 cut(s) 20, 39, 198, 265
BstNI CCWGG 2 cut(s) 230, 434
BstNSI RCATGY 2 cut(s) 339, 490
BstSCI CCNGG 2 cut(s) 228, 432
BstV1I GCAGC 1 cut(s) 245
BstX2I RGATCY 2 cut(s) 20, 39
BstYI RGATCY 2 cut(s) 20, 39
BsuRI GGCC 3 cut(s) 179, 431, 462
BtgI CCRYGG 2 cut(s) 161, 174
BtsCI GGATG 2 cut(s) 156, 171
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 3 cut(s) 292, 329, 350
Cac8I GCNNGC 2 cut(s) 143, 337
CciI TCATGA 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 178, 430
Csp6I GTAC 1 cut(s) 133
CviAII CATG 6 cut(s) 162, 175, 272, 336, 427, 487
CviJI RGCY 6 cut(s) 141, 145, 173, 179, 431, 462
CviKI_1 RGCY 6 cut(s) 141, 145, 173, 179, 431, 462
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 205
DpnI GATC 4 cut(s) 22, 41, 200, 267
DpnII GATC 4 cut(s) 20, 39, 198, 265
DraIII CACNNNGTG 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 460
Eco130I CCWWGG 2 cut(s) 161, 174
Eco57I CTGAAG 2 cut(s) 32, 98
EcoNI CCTNNNNNAGG 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 228, 432
EcoT14I CCWWGG 2 cut(s) 161, 174
ErhI CCWWGG 2 cut(s) 161, 174
FaeI CATG 6 cut(s) 165, 178, 275, 339, 430, 490
FatI CATG 6 cut(s) 161, 174, 271, 335, 426, 486
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 2 cut(s) 143, 178
Fsp4HI GCNGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 3 cut(s) 179, 431, 462
Hin1II CATG 6 cut(s) 165, 178, 275, 339, 430, 490
HinfI GANTC 1 cut(s) 323
HphI GGTGA 1 cut(s) 298
Hpy188I TCNGA 4 cut(s) 12, 20, 208, 472
Hpy188III TCNNGA 3 cut(s) 32, 193, 272
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 2 cut(s) 56, 345
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 413
HpyF3I CTNAG 1 cut(s) 205
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 6 cut(s) 165, 178, 275, 339, 430, 490
Kzo9I GATC 4 cut(s) 20, 39, 198, 265
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 1 cut(s) 165
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 287
MalI GATC 4 cut(s) 22, 41, 200, 267
MboI GATC 4 cut(s) 20, 39, 198, 265
MboII GAAGA 3 cut(s) 104, 208, 416
MflI RGATCY 2 cut(s) 20, 39
MlsI TGGCCA 1 cut(s) 462
MluCI AATT 2 cut(s) 93, 466
MluNI TGGCCA 1 cut(s) 462
MnlI CCTC 2 cut(s) 39, 191
Mox20I TGGCCA 1 cut(s) 462
MscI TGGCCA 1 cut(s) 462
MslI CAYNNNNRTG 1 cut(s) 334
Msp20I TGGCCA 1 cut(s) 462
MspR9I CCNGG 2 cut(s) 230, 434
MvaI CCWGG 2 cut(s) 230, 434
NcoI CCATGG 2 cut(s) 161, 174
NdeII GATC 4 cut(s) 20, 39, 198, 265
NlaIII CATG 6 cut(s) 165, 178, 275, 339, 430, 490
NlaIV GGNNCC 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 287
NspI RCATGY 2 cut(s) 339, 490
PaeI GCATGC 1 cut(s) 339
PagI TCATGA 1 cut(s) 271
PciI ACATGT 1 cut(s) 486
PfeI GAWTC 1 cut(s) 323
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 235
PscI ACATGT 1 cut(s) 486
Psp6I CCWGG 2 cut(s) 228, 432
PspGI CCWGG 2 cut(s) 228, 432
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 2 cut(s) 178, 430
PsuI RGATCY 2 cut(s) 20, 39
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 334
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 4 cut(s) 20, 39, 198, 265
Sau96I GGNCC 2 cut(s) 178, 430
ScrFI CCNGG 2 cut(s) 230, 434
SetI ASST 5 cut(s) 63, 134, 227, 279, 294
SfaNI GCATC 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
SphI GCATGC 1 cut(s) 339
Sse9I AATT 2 cut(s) 93, 466
StyD4I CCNGG 2 cut(s) 228, 432
StyI CCWWGG 2 cut(s) 161, 174
TaaI ACNGT 2 cut(s) 56, 345
TaiI ACGT 1 cut(s) 279
TaqI TCGA 3 cut(s) 183, 326, 402
TasI AATT 2 cut(s) 93, 466
TfiI GAWTC 1 cut(s) 323
TscAI CASTG 3 cut(s) 292, 336, 350
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 3 cut(s) 292, 336, 350
Tth111I GACNNNGTC 1 cut(s) 278
XagI CCTNNNNNAGG 1 cut(s) 127
XceI RCATGY 2 cut(s) 339, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.