Rmu_ssc0000400.1_g000040

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000400.1
OG0000419
Physical Location & Seq
Reverse (-)
176827 .. 177726
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000400.1_g000040.1.cds

Sequence Viewer

Length: 834 bp
atgttccgagctttgttttccctagctgaagagcttcatgaaaatgccaagccacagtttgaagaagttcatgaaaatatgacacagcaaaaatcagaatggttcgactttcaaaatcttattggaagtcaaaattccgactcatgtttacctccaactctcttcactgtccctggaccttatgttggaagatatgtggttaatgttcagagtgaacatcctcaagaacacaagctttggcttattgaaaatggttttgtctacaatctctggaccaaaacaaatgatgatctcaagggactaccacccatcatagtcaacacagtcaagaatgttataaaaaatgactgcatcctcatattgaagttcagattgacttcactagagtggattcaaaagaaaaataaggaggttgactatatttctccataccattatgtgagaatcattccaaggaagtatcttcaccctgcatgtgttggatataatggccaatcaaattctagtattccctggatgaaggctatgtcactggaatatatcaaaaagatcattgaaaaagatacagaaaatacattcctagtagtaggagaaaaatttattgttactgcatatgatcatcctgaggttattagcagtgacattttcttatctcttaagagaaaagagatcgactacacgttagcctgttttcagtggatagaaaagattgaaaacgacaaacactgcaagatgtatgaagatacagacgtgaaagaaaacagaactaatgccaggatggaaaacagctcttttgtcctaggccacaattctgaaacagatgaaaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

277

Amino Acids

32.47

Weight (kDa)

5.64

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AccI GTMKAC 1 cut(s) 261
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 3 cut(s) 133, 499, 596
AcuI CTGAAG 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 185
AflII CTTAAG 1 cut(s) 656
AflIII ACRYGT 2 cut(s) 678, 828
AgsI TTSAA 7 cut(s) 62, 113, 248, 364, 395, 557, 713
AjiI CACGTC 1 cut(s) 751
AjnI CCWGG 3 cut(s) 172, 512, 773
AleI CACNNNNGTG 1 cut(s) 385
AluBI AGCT 5 cut(s) 11, 26, 34, 235, 789
AluI AGCT 5 cut(s) 11, 26, 34, 235, 789
AoxI GGCC 2 cut(s) 490, 802
ApoI RAATTY 3 cut(s) 133, 499, 596
Asp700I GAANNNNTTC 2 cut(s) 33, 66
AspA2I CCTAGG 1 cut(s) 799
AspS9I GGNCC 2 cut(s) 176, 273
AsuHPI GGTGA 1 cut(s) 458
AvaII GGWCC 2 cut(s) 176, 273
AvrII CCTAGG 1 cut(s) 799
AxyI CCTNAGG 1 cut(s) 624
BaeI ACNNNNGTAYC 2 cut(s) 735, 768
BalI TGGCCA 1 cut(s) 492
BccI CCATC 2 cut(s) 317, 772
BciT130I CCWGG 3 cut(s) 174, 514, 775
BclI TGATCA 1 cut(s) 616
BfaI CTAG 5 cut(s) 23, 383, 504, 581, 800
BfrI CTTAAG 1 cut(s) 656
BlnI CCTAGG 1 cut(s) 799
Bme1390I CCNGG 3 cut(s) 174, 514, 775
Bme18I GGWCC 2 cut(s) 176, 273
BmgBI CACGTC 1 cut(s) 751
BmgT120I GGNCC 2 cut(s) 176, 273
BmrFI CCNGG 3 cut(s) 174, 514, 775
BmsI GCATC 1 cut(s) 360
BpuEI CTTGAG 2 cut(s) 207, 278
BsaJI CCNNGG 4 cut(s) 172, 452, 512, 799
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 537
Bse21I CCTNAGG 1 cut(s) 624
BseBI CCWGG 3 cut(s) 174, 514, 775
BseDI CCNNGG 4 cut(s) 172, 452, 512, 799
BseGI GGATG 5 cut(s) 217, 351, 522, 619, 783
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 615
BseNI ACTGG 1 cut(s) 537
BshFI GGCC 2 cut(s) 492, 804
BslFI GGGAC 2 cut(s) 155, 312
BslI CCNNNNNNNGG 1 cut(s) 185
BsmFI GGGAC 2 cut(s) 155, 312
BsnI GGCC 2 cut(s) 492, 804
Bsp143I GATC 4 cut(s) 289, 549, 616, 669
BspANI GGCC 2 cut(s) 492, 804
BspCNI CTCAG 1 cut(s) 616
BspHI TCATGA 2 cut(s) 37, 70
BspQI GCTCTTC 1 cut(s) 24
BspTI CTTAAG 1 cut(s) 656
BsrI ACTGG 1 cut(s) 537
BssECI CCNNGG 4 cut(s) 172, 452, 512, 799
BssMI GATC 4 cut(s) 289, 549, 616, 669
BssT1I CCWWGG 2 cut(s) 452, 799
Bst2UI CCWGG 3 cut(s) 174, 514, 775
Bst4CI ACNGT 3 cut(s) 57, 169, 325
Bst6I CTCTTC 2 cut(s) 24, 167
BstAFI CTTAAG 1 cut(s) 656
BstDEI CTNAG 1 cut(s) 624
BstF5I GGATG 5 cut(s) 217, 351, 522, 619, 783
BstKTI GATC 4 cut(s) 292, 552, 619, 672
BstMBI GATC 4 cut(s) 289, 549, 616, 669
BstNI CCWGG 3 cut(s) 174, 514, 775
BstNSI RCATGY 2 cut(s) 477, 832
BstSCI CCNGG 3 cut(s) 172, 512, 773
Bsu36I CCTNAGG 1 cut(s) 624
BsuRI GGCC 2 cut(s) 492, 804
BtrI CACGTC 1 cut(s) 751
BtsCI GGATG 5 cut(s) 217, 351, 522, 619, 783
BtsI GCAGTG 2 cut(s) 643, 724
BtsIMutI CAGTG 5 cut(s) 165, 530, 643, 701, 724
CciI TCATGA 2 cut(s) 37, 70
Cfr13I GGNCC 2 cut(s) 176, 273
CviAII CATG 5 cut(s) 38, 71, 144, 474, 829
DdeI CTNAG 1 cut(s) 624
DpnI GATC 4 cut(s) 291, 551, 618, 671
DpnII GATC 4 cut(s) 289, 549, 616, 669
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 24, 167
EarI CTCTTC 2 cut(s) 24, 167
Eco130I CCWWGG 2 cut(s) 452, 799
Eco47I GGWCC 2 cut(s) 176, 273
Eco57I CTGAAG 1 cut(s) 48
Eco81I CCTNAGG 1 cut(s) 624
EcoRII CCWGG 3 cut(s) 172, 512, 773
EcoT14I CCWWGG 2 cut(s) 452, 799
ErhI CCWWGG 2 cut(s) 452, 799
FaeI CATG 5 cut(s) 41, 74, 147, 477, 832
FaqI GGGAC 2 cut(s) 155, 312
FatI CATG 5 cut(s) 37, 70, 143, 473, 828
FauNDI CATATG 1 cut(s) 613
FbaI TGATCA 1 cut(s) 616
FblI GTMKAC 1 cut(s) 261
FokI GGATG 5 cut(s) 204, 338, 529, 606, 790
FspBI CTAG 5 cut(s) 23, 383, 504, 581, 800
HaeIII GGCC 2 cut(s) 492, 804
Hin1II CATG 5 cut(s) 41, 74, 147, 477, 832
HincII GTYRAC 2 cut(s) 319, 415
HindII GTYRAC 2 cut(s) 319, 415
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 3 cut(s) 140, 391, 444
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 5 cut(s) 149, 215, 262, 319, 415
Hpy188I TCNGA 6 cut(s) 8, 97, 139, 210, 371, 814
Hpy188III TCNNGA 6 cut(s) 38, 71, 224, 271, 328, 623
Hpy8I GTNNAC 5 cut(s) 149, 215, 262, 319, 415
HpyAV CCTTC 1 cut(s) 514
HpyCH4III ACNGT 3 cut(s) 57, 169, 325
HpyCH4IV ACGT 2 cut(s) 680, 750
HpyCH4V TGCA 4 cut(s) 351, 473, 611, 729
HpyF3I CTNAG 1 cut(s) 624
HpySE526I ACGT 2 cut(s) 680, 750
Hsp92II CATG 5 cut(s) 41, 74, 147, 477, 832
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 4 cut(s) 289, 549, 616, 669
LguI GCTCTTC 1 cut(s) 24
LweI GCATC 1 cut(s) 360
MaeI CTAG 5 cut(s) 23, 383, 504, 581, 800
MaeII ACGT 2 cut(s) 680, 750
MaeIII GTNAC 3 cut(s) 528, 604, 638
MalI GATC 4 cut(s) 291, 551, 618, 671
MboI GATC 4 cut(s) 289, 549, 616, 669
MboII GAAGA 6 cut(s) 41, 74, 154, 201, 455, 752
MlsI TGGCCA 1 cut(s) 492
MluCI AATT 4 cut(s) 133, 499, 596, 808
MluNI TGGCCA 1 cut(s) 492
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 4 cut(s) 162, 166, 179, 460
MnlI CCTC 5 cut(s) 162, 231, 365, 403, 619
Mox20I TGGCCA 1 cut(s) 492
MroXI GAANNNNTTC 2 cut(s) 33, 66
MscI TGGCCA 1 cut(s) 492
MseI TTAA 2 cut(s) 201, 657
MslI CAYNNNNRTG 2 cut(s) 42, 385
Msp20I TGGCCA 1 cut(s) 492
MspCI CTTAAG 1 cut(s) 656
MspR9I CCNGG 3 cut(s) 174, 514, 775
MvaI CCWGG 3 cut(s) 174, 514, 775
NdeI CATATG 1 cut(s) 613
NdeII GATC 4 cut(s) 289, 549, 616, 669
NlaIII CATG 5 cut(s) 41, 74, 147, 477, 832
NmuCI GTSAC 2 cut(s) 528, 638
NspI RCATGY 2 cut(s) 477, 832
OliI CACNNNNGTG 1 cut(s) 385
PagI TCATGA 2 cut(s) 37, 70
PciI ACATGT 1 cut(s) 828
PciSI GCTCTTC 1 cut(s) 24
PdmI GAANNNNTTC 2 cut(s) 33, 66
PfeI GAWTC 2 cut(s) 391, 444
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PscI ACATGT 1 cut(s) 828
PsiI TTATAA 1 cut(s) 338
Psp6I CCWGG 3 cut(s) 172, 512, 773
PspGI CCWGG 3 cut(s) 172, 512, 773
PspPI GGNCC 2 cut(s) 176, 273
RseI CAYNNNNRTG 2 cut(s) 42, 385
SapI GCTCTTC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 201, 657
Sau3AI GATC 4 cut(s) 289, 549, 616, 669
Sau96I GGNCC 2 cut(s) 176, 273
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 174, 514, 775
SfaNI GCATC 1 cut(s) 360
SinI GGWCC 2 cut(s) 176, 273
SmiMI CAYNNNNRTG 2 cut(s) 42, 385
SmlI CTYRAG 3 cut(s) 222, 293, 656
SmoI CTYRAG 3 cut(s) 222, 293, 656
Sse9I AATT 4 cut(s) 133, 499, 596, 808
SspMI CTAG 5 cut(s) 23, 383, 504, 581, 800
StyD4I CCNGG 3 cut(s) 172, 512, 773
StyI CCWWGG 2 cut(s) 452, 799
TaaI ACNGT 3 cut(s) 57, 169, 325
TaiI ACGT 2 cut(s) 683, 753
TaqI TCGA 2 cut(s) 105, 672
TasI AATT 4 cut(s) 133, 499, 596, 808
TfiI GAWTC 2 cut(s) 391, 444
Tru1I TTAA 2 cut(s) 201, 657
Tru9I TTAA 2 cut(s) 201, 657
TscAI CASTG 5 cut(s) 172, 537, 643, 701, 731
TseFI GTSAC 2 cut(s) 528, 638
Tsp45I GTSAC 2 cut(s) 528, 638
TspDTI ATGAA 6 cut(s) 26, 54, 59, 87, 533, 753
TspRI CASTG 5 cut(s) 172, 537, 643, 701, 731
Vha464I CTTAAG 1 cut(s) 656
VpaK11BI GGWCC 2 cut(s) 176, 273
XapI RAATTY 3 cut(s) 133, 499, 596
XceI RCATGY 2 cut(s) 477, 832
XmaJI CCTAGG 1 cut(s) 799
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 33, 66
XspI CTAG 5 cut(s) 23, 383, 504, 581, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.