Rmu_sc0003470.1_g000017

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003470.1
OG0000419
Physical Location & Seq
Forward (+)
83138 .. 84436
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003470.1_g000017.1.cds

Sequence Viewer

Length: 1191 bp
atgacaatgttcaaccgtagagaaggcgatgaaggtcgcaaccccagaaaccggaggacaggacaagaacctgaaaatgtcgaggaacccaaagaaaaaatcctcaaaaggtttttgctaaatccaaaaggattggccataattaatcaatcccagggtaaaggattggcttgcacgtctcaaacggcagacggtttagcctcatcaagaccatttaagcctgttgctttgccaaagagcaaaataattccatctggagttataaatgaaagaaacaatggactcatgttcccagctttgtttgccttacctgaagaacttcatgaaaacgccaaactacagttcgaagaattttatgaaaatacacagcagagtgctgtccagaatgaaaaaattcaatatcttgaagatcctgaaagtgctagaatacctattttagcactaaaagaattagattggtttgactttcataatcttattggaagttataattctgactcatgtcttcctccaactctctttattgtccctagaccttatgttgggagatatgtagttaatgttcagagtgaacatcctcaagaacacaagctctggcttgttgaaaatggttttgtccataatctctggaccaaaaaaaattatgatctcaagggtttacaccccatcatagttaacattgtcaagaatgttagaaaaaatgactgcattcttaggttgaaattcagatttactccaccagaatggattcagaagaaaaatggtgaagttgattatatttctccataccattatgtgagaattattcatggaaaatatcttcagcctgcatgtgtaggatataatggccaaccaaattctagcattccctggatgaaggctatgtccctggaatacatcaaaaagatcatcgaagaagatactgaaaatacattcctagcggcaggagaaaaaattatagttattgcatatgaccatcctgaggttattagcagtgacggttttctatctctcaagaaaaaggaaattgactccactatggcctgttttcagtgggttgagaaaattgaaaacgatagtcattacaaaatgtatgaagacacagacacagaagacaacaaaaccacagcaaggatggaaagcaactcttttgtcctaggccaaaattctaaaatagatgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

396

Amino Acids

45.65

Weight (kDa)

6.12

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 263, 489
AciI CCGC 1 cut(s) 941
AclWI GGATC 1 cut(s) 404
AcoI YGGCCR 2 cut(s) 135, 847
AcsI RAATTY 5 cut(s) 350, 393, 722, 856, 1165
AcuI CTGAAG 2 cut(s) 333, 806
AfiI CCNNNNNNNGG 4 cut(s) 51, 542, 982, 1131
AflIII ACRYGT 1 cut(s) 1185
AgsI TTSAA 6 cut(s) 13, 398, 407, 605, 721, 1070
AjiI CACGTC 1 cut(s) 177
AjnI CCWGG 3 cut(s) 153, 869, 888
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AluBI AGCT 2 cut(s) 296, 592
AluI AGCT 2 cut(s) 296, 592
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 1 cut(s) 404
AoxI GGCC 4 cut(s) 135, 847, 1041, 1159
ApoI RAATTY 5 cut(s) 350, 393, 722, 856, 1165
AseI ATTAAT 1 cut(s) 144
Asp700I GAANNNNTTC 3 cut(s) 318, 393, 747
AspA2I CCTAGG 1 cut(s) 1156
AspS9I GGNCC 1 cut(s) 630
AsuHPI GGTGA 1 cut(s) 776
AsuII TTCGAA 1 cut(s) 345
AvaII GGWCC 1 cut(s) 630
AvrII CCTAGG 1 cut(s) 1156
AxyI CCTNAGG 1 cut(s) 981
BalI TGGCCA 2 cut(s) 137, 849
BbsI GAAGAC 3 cut(s) 497, 1104, 1119
BccI CCATC 4 cut(s) 259, 674, 984, 1129
BceAI ACGGC 1 cut(s) 201
BciT130I CCWGG 3 cut(s) 155, 871, 890
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 5 cut(s) 423, 531, 861, 938, 1157
BfmI CTRYAG 1 cut(s) 338
BisI GCNGC 1 cut(s) 942
BlnI CCTAGG 1 cut(s) 1156
BlsI GCNGC 1 cut(s) 943
Bme1390I CCNGG 3 cut(s) 155, 871, 890
Bme18I GGWCC 1 cut(s) 630
BmgBI CACGTC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 630
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 3 cut(s) 155, 871, 890
BoxI GACNNNNGTC 1 cut(s) 501
BpiI GAAGAC 3 cut(s) 497, 1104, 1119
BpmI CTGGAG 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 345
BpuEI CTTGAG 3 cut(s) 564, 635, 998
BsaJI CCNNGG 5 cut(s) 153, 154, 869, 888, 1156
BsaWI WCCGGW 1 cut(s) 51
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 542, 982, 1131
Bse21I CCTNAGG 1 cut(s) 981
BseBI CCWGG 3 cut(s) 155, 871, 890
BseDI CCNNGG 5 cut(s) 153, 154, 869, 888, 1156
BseGI GGATG 4 cut(s) 574, 879, 976, 1140
BseLI CCNNNNNNNGG 4 cut(s) 51, 542, 982, 1131
BseMII CTCAG 1 cut(s) 972
BseYI CCCAGC 1 cut(s) 292
BshFI GGCC 4 cut(s) 137, 849, 1043, 1161
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 2 cut(s) 512, 871
BslI CCNNNNNNNGG 4 cut(s) 51, 542, 982, 1131
BsmAI GTCTC 1 cut(s) 183
BsmBI CGTCTC 1 cut(s) 183
BsmFI GGGAC 2 cut(s) 512, 871
BsmI GAATGC 2 cut(s) 708, 864
BsnI GGCC 4 cut(s) 137, 849, 1043, 1161
Bsp119I TTCGAA 1 cut(s) 345
Bsp143I GATC 3 cut(s) 409, 646, 906
BspACI CCGC 1 cut(s) 941
BspANI GGCC 4 cut(s) 137, 849, 1043, 1161
BspCNI CTCAG 1 cut(s) 973
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 87
BspPI GGATC 1 cut(s) 404
BspT104I TTCGAA 1 cut(s) 345
BssECI CCNNGG 5 cut(s) 153, 154, 869, 888, 1156
BssMI GATC 3 cut(s) 409, 646, 906
BssT1I CCWWGG 1 cut(s) 1156
Bst2UI CCWGG 3 cut(s) 155, 871, 890
Bst4CI ACNGT 4 cut(s) 17, 194, 342, 1001
BstBI TTCGAA 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 172, 828
BstDEI CTNAG 2 cut(s) 713, 981
BstF5I GGATG 4 cut(s) 574, 879, 976, 1140
BstKTI GATC 3 cut(s) 412, 649, 909
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 3 cut(s) 409, 646, 906
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 3 cut(s) 155, 871, 890
BstNSI RCATGY 2 cut(s) 834, 1189
BstPAI GACNNNNGTC 1 cut(s) 501
BstSCI CCNGG 3 cut(s) 153, 869, 888
BstSFI CTRYAG 1 cut(s) 338
BstV2I GAAGAC 3 cut(s) 497, 1104, 1119
BstX2I RGATCY 1 cut(s) 409
BstXI CCANNNNNNTGG 1 cut(s) 744
BstYI RGATCY 1 cut(s) 409
Bsu36I CCTNAGG 1 cut(s) 981
BsuRI GGCC 4 cut(s) 137, 849, 1043, 1161
BtgZI GCGATG 1 cut(s) 42
BtrI CACGTC 1 cut(s) 177
BtsCI GGATG 4 cut(s) 574, 879, 976, 1140
BtsI GCAGTG 1 cut(s) 1000
BtsIMutI CAGTG 2 cut(s) 1000, 1058
Cac8I GCNNGC 2 cut(s) 172, 828
CciI TCATGA 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 630
CviAII CATG 6 cut(s) 286, 323, 501, 809, 831, 1186
DdeI CTNAG 2 cut(s) 713, 981
DpnI GATC 3 cut(s) 411, 648, 908
DpnII GATC 3 cut(s) 409, 646, 906
EaeI YGGCCR 2 cut(s) 135, 847
Eco130I CCWWGG 1 cut(s) 1156
Eco47I GGWCC 1 cut(s) 630
Eco57I CTGAAG 2 cut(s) 333, 806
Eco81I CCTNAGG 1 cut(s) 981
EcoRII CCWGG 3 cut(s) 153, 869, 888
EcoT14I CCWWGG 1 cut(s) 1156
ErhI CCWWGG 1 cut(s) 1156
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 6 cut(s) 289, 326, 504, 812, 834, 1189
FalI AAGNNNNNCTT 2 cut(s) 1132, 1164
FaqI GGGAC 2 cut(s) 512, 871
FatI CATG 6 cut(s) 285, 322, 500, 808, 830, 1185
FauNDI CATATG 1 cut(s) 970
Fnu4HI GCNGC 1 cut(s) 942
FokI GGATG 4 cut(s) 561, 886, 963, 1147
Fsp4HI GCNGC 1 cut(s) 942
FspBI CTAG 5 cut(s) 423, 531, 861, 938, 1157
GluI GCNGC 1 cut(s) 942
GsaI CCCAGC 1 cut(s) 296
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 4 cut(s) 137, 849, 1043, 1161
HapII CCGG 1 cut(s) 52
Hin1II CATG 6 cut(s) 289, 326, 504, 812, 834, 1189
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HinfI GANTC 4 cut(s) 282, 497, 748, 1031
HpaI GTTAAC 1 cut(s) 676
HpaII CCGG 1 cut(s) 52
HphI GGTGA 1 cut(s) 776
Hpy166II GTNNAC 3 cut(s) 572, 659, 676
Hpy188I TCNGA 4 cut(s) 496, 567, 728, 753
Hpy8I GTNNAC 3 cut(s) 572, 659, 676
HpyAV CCTTC 3 cut(s) 17, 26, 871
HpyCH4III ACNGT 4 cut(s) 17, 194, 342, 1001
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 4 cut(s) 174, 708, 830, 968
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 713, 981
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 6 cut(s) 289, 326, 504, 812, 834, 1189
KspAI GTTAAC 1 cut(s) 676
Kzo9I GATC 3 cut(s) 409, 646, 906
MaeI CTAG 5 cut(s) 423, 531, 861, 938, 1157
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 995
MalI GATC 3 cut(s) 411, 648, 908
MboI GATC 3 cut(s) 409, 646, 906
MflI RGATCY 1 cut(s) 409
MlsI TGGCCA 2 cut(s) 137, 849
MluNI TGGCCA 2 cut(s) 137, 849
MlyI GAGTC 3 cut(s) 276, 491, 1025
MmeI TCCRAC 1 cut(s) 536
MnlI CCTC 7 cut(s) 48, 76, 113, 211, 519, 588, 976
Mox20I TGGCCA 2 cut(s) 137, 849
MroXI GAANNNNTTC 3 cut(s) 318, 393, 747
MscI TGGCCA 2 cut(s) 137, 849
MseI TTAA 4 cut(s) 144, 216, 558, 675
MslI CAYNNNNRTG 1 cut(s) 742
Msp20I TGGCCA 2 cut(s) 137, 849
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 3 cut(s) 155, 871, 890
Mva1269I GAATGC 2 cut(s) 708, 864
MvaI CCWGG 3 cut(s) 155, 871, 890
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeI CATATG 1 cut(s) 970
NdeII GATC 3 cut(s) 409, 646, 906
NlaIII CATG 6 cut(s) 289, 326, 504, 812, 834, 1189
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 995
NspI RCATGY 2 cut(s) 834, 1189
NspV TTCGAA 1 cut(s) 345
PagI TCATGA 1 cut(s) 322
PasI CCCWGGG 1 cut(s) 154
PciI ACATGT 1 cut(s) 1185
PctI GAATGC 2 cut(s) 708, 864
PdmI GAANNNNTTC 3 cut(s) 318, 393, 747
PfeI GAWTC 1 cut(s) 748
PkrI GCNGC 1 cut(s) 943
PleI GAGTC 3 cut(s) 276, 491, 1025
PpsI GAGTC 3 cut(s) 276, 491, 1025
PscI ACATGT 1 cut(s) 1185
PshAI GACNNNNGTC 1 cut(s) 501
PshBI ATTAAT 1 cut(s) 144
PsiI TTATAA 2 cut(s) 263, 489
Psp6I CCWGG 3 cut(s) 153, 869, 888
PspFI CCCAGC 1 cut(s) 292
PspGI CCWGG 3 cut(s) 153, 869, 888
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 630
PsrI GAACNNNNNNTAC 2 cut(s) 546, 578
PsuI RGATCY 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 742
SaqAI TTAA 4 cut(s) 144, 216, 558, 675
SatI GCNGC 1 cut(s) 942
Sau3AI GATC 3 cut(s) 409, 646, 906
Sau96I GGNCC 1 cut(s) 630
SchI GAGTC 3 cut(s) 276, 491, 1025
ScrFI CCNGG 3 cut(s) 155, 871, 890
SfcI CTRYAG 1 cut(s) 338
SfuI TTCGAA 1 cut(s) 345
SinI GGWCC 1 cut(s) 630
SmiMI CAYNNNNRTG 1 cut(s) 742
SmlI CTYRAG 3 cut(s) 579, 650, 1013
SmoI CTYRAG 3 cut(s) 579, 650, 1013
SsiI CCGC 1 cut(s) 941
SspMI CTAG 5 cut(s) 423, 531, 861, 938, 1157
StyD4I CCNGG 3 cut(s) 153, 869, 888
StyI CCWWGG 1 cut(s) 1156
TaaI ACNGT 4 cut(s) 17, 194, 342, 1001
TaiI ACGT 1 cut(s) 179
TaqI TCGA 3 cut(s) 81, 345, 912
TauI GCSGC 1 cut(s) 944
TfiI GAWTC 1 cut(s) 748
Tru1I TTAA 4 cut(s) 144, 216, 558, 675
Tru9I TTAA 4 cut(s) 144, 216, 558, 675
TscAI CASTG 2 cut(s) 1000, 1058
TseFI GTSAC 1 cut(s) 995
Tsp45I GTSAC 1 cut(s) 995
TspRI CASTG 2 cut(s) 1000, 1058
VpaK11BI GGWCC 1 cut(s) 630
VspI ATTAAT 1 cut(s) 144
XapI RAATTY 5 cut(s) 350, 393, 722, 856, 1165
XceI RCATGY 2 cut(s) 834, 1189
XcmI CCANNNNNNNNNTGG 1 cut(s) 1132
XmaJI CCTAGG 1 cut(s) 1156
XmnI GAANNNNTTC 3 cut(s) 318, 393, 747
XspI CTAG 5 cut(s) 423, 531, 861, 938, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.