Rmu_sc0003374.1_g000002

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003374.1
OG0000419
Physical Location & Seq
Reverse (-)
4569 .. 5489
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003374.1_g000002.1.cds

Sequence Viewer

Length: 762 bp
atgttcccggcactctttgcactaggtgaagaactatatgagaatgccagaccacaatttgaagaaagtcatatacagcagagtgctgtcaggaaagaaaaaattctcttcctggaaagtccagaaagtgctagggttcctgtcatggcacttaatgaatcagactggcatgaattccataatctgataggaagacataatccagaagacctgagtgaacatcctcaagaacacaagctctggcttgttgaaaatggttttgtccataatctatggaccaaaacaaatgatgatctaaaaggtttgccgcctatcattgtcaacacagtcaaaaatataagaaaaaatgactgtaggcttcgactgaagttcagatccactcctccagaatggatccagaaggcaaacggtgaagttgaatatattcctccttatcattacgccatgactctggaatatatcaaaaagatcatctctgaagatacttacaataccttcctggcagcaggagagaaaattatcatcactgcttacgatcatcctgacgtagtcagcagtgacttattcatatctcttaccagaaaggagatagattcgacactggcatgcttacgatgggtggagaagcttgaaattgacaaccactacaagatgtatgttgatacagatgtcgaagataatgcaacaacagtaaggatggcccaggcagataacgactcgtctgtccttagtcacaattcagaaaccgacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

253

Amino Acids

29.4

Weight (kDa)

5.03

Isoelectric Point (pI)

58.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 722
AciI CCGC 1 cut(s) 308
AclWI GGATC 3 cut(s) 369, 388, 401
AcsI RAATTY 2 cut(s) 102, 173
AcuI CTGAAG 2 cut(s) 386, 498
AdeI CACNNNGTG 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 756
AgsI TTSAA 4 cut(s) 62, 251, 419, 632
AjnI CCWGG 3 cut(s) 111, 498, 702
AluBI AGCT 2 cut(s) 238, 628
AluI AGCT 2 cut(s) 238, 628
AlwI GGATC 3 cut(s) 369, 388, 401
AoxI GGCC 1 cut(s) 699
ApeKI GCWGC 1 cut(s) 503
ApoI RAATTY 2 cut(s) 102, 173
Asp700I GAANNNNTTC 2 cut(s) 102, 423
AspS9I GGNCC 2 cut(s) 276, 700
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 38, 422
AvaII GGWCC 1 cut(s) 276
BaeI ACNNNNGTAYC 2 cut(s) 654, 687
BamHI GGATCC 1 cut(s) 393
BbsI GAAGAC 2 cut(s) 199, 213
BbvI GCAGC 1 cut(s) 515
BccI CCATC 2 cut(s) 609, 691
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BciT130I CCWGG 3 cut(s) 113, 500, 704
BcnI CCSGG 1 cut(s) 8
BfaI CTAG 2 cut(s) 23, 132
BfmI CTRYAG 1 cut(s) 352
BisI GCNGC 2 cut(s) 308, 504
BlsI GCNGC 2 cut(s) 309, 505
Bme1390I CCNGG 4 cut(s) 8, 113, 500, 704
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 2 cut(s) 276, 700
BmiI GGNNCC 2 cut(s) 138, 395
BmrFI CCNGG 4 cut(s) 8, 113, 500, 704
BpiI GAAGAC 2 cut(s) 199, 213
BpmI CTGGAG 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 702
Bse1I ACTGG 2 cut(s) 170, 606
BseBI CCWGG 3 cut(s) 113, 500, 704
BseDI CCNNGG 1 cut(s) 702
BseGI GGATG 3 cut(s) 220, 538, 702
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 2 cut(s) 170, 606
BseRI GAGGAG 1 cut(s) 372
BseXI GCAGC 1 cut(s) 515
BshFI GGCC 1 cut(s) 701
BsiSI CCGG 1 cut(s) 8
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 1 cut(s) 701
Bsp143I GATC 5 cut(s) 292, 374, 393, 468, 535
BspACI CCGC 1 cut(s) 308
BspANI GGCC 1 cut(s) 701
BspCNI CTCAG 1 cut(s) 204
BspLI GGNNCC 2 cut(s) 138, 395
BspPI GGATC 3 cut(s) 369, 388, 401
BsrI ACTGG 2 cut(s) 170, 606
BssECI CCNNGG 1 cut(s) 702
BssMI GATC 5 cut(s) 292, 374, 393, 468, 535
Bst2UI CCWGG 3 cut(s) 113, 500, 704
Bst4CI ACNGT 4 cut(s) 328, 353, 410, 691
Bst6I CTCTTC 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 607
BstDEI CTNAG 2 cut(s) 212, 728
BstF5I GGATG 3 cut(s) 220, 538, 702
BstKTI GATC 5 cut(s) 295, 377, 396, 471, 538
BstMBI GATC 5 cut(s) 292, 374, 393, 468, 535
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 3 cut(s) 113, 500, 704
BstNSI RCATGY 2 cut(s) 609, 760
BstSCI CCNGG 4 cut(s) 6, 111, 498, 702
BstSFI CTRYAG 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 515
BstV2I GAAGAC 2 cut(s) 199, 213
BstX2I RGATCY 2 cut(s) 374, 393
BstXI CCANNNNNNTGG 1 cut(s) 451
BstYI RGATCY 2 cut(s) 374, 393
BsuRI GGCC 1 cut(s) 701
BtsCI GGATG 3 cut(s) 220, 538, 702
BtsI GCAGTG 2 cut(s) 525, 562
BtsIMutI CAGTG 3 cut(s) 525, 562, 599
Cac8I GCNNGC 1 cut(s) 607
Cfr13I GGNCC 2 cut(s) 276, 700
CviAII CATG 5 cut(s) 145, 170, 445, 606, 757
CviJI RGCY 5 cut(s) 238, 244, 358, 628, 701
CviKI_1 RGCY 5 cut(s) 238, 244, 358, 628, 701
DdeI CTNAG 2 cut(s) 212, 728
DpnI GATC 5 cut(s) 294, 376, 395, 470, 537
DpnII GATC 5 cut(s) 292, 374, 393, 468, 535
DraIII CACNNNGTG 1 cut(s) 26
DrdI GACNNNNNNGTC 1 cut(s) 722
DseDI GACNNNNNNGTC 1 cut(s) 722
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 276
Eco57I CTGAAG 2 cut(s) 386, 498
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 3 cut(s) 111, 498, 702
FaeI CATG 5 cut(s) 148, 173, 448, 609, 760
FatI CATG 5 cut(s) 144, 169, 444, 605, 756
Fnu4HI GCNGC 2 cut(s) 308, 504
FokI GGATG 3 cut(s) 207, 525, 709
Fsp4HI GCNGC 2 cut(s) 308, 504
FspBI CTAG 2 cut(s) 23, 132
GluI GCNGC 2 cut(s) 308, 504
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 1 cut(s) 701
HapII CCGG 1 cut(s) 8
Hin1II CATG 5 cut(s) 148, 173, 448, 609, 760
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 4 cut(s) 158, 448, 593, 716
HpaII CCGG 1 cut(s) 8
HphI GGTGA 2 cut(s) 38, 422
Hpy166II GTNNAC 2 cut(s) 218, 322
Hpy188I TCNGA 5 cut(s) 163, 186, 374, 478, 742
Hpy188III TCNNGA 8 cut(s) 91, 122, 203, 227, 386, 397, 452, 542
Hpy8I GTNNAC 2 cut(s) 218, 322
Hpy99I CGWCG 1 cut(s) 752
HpyAV CCTTC 2 cut(s) 394, 505
HpyCH4III ACNGT 4 cut(s) 328, 353, 410, 691
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 2 cut(s) 20, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 2 cut(s) 212, 728
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 5 cut(s) 148, 173, 448, 609, 760
Kzo9I GATC 5 cut(s) 292, 374, 393, 468, 535
Lsp1109I GCAGC 1 cut(s) 515
MaeI CTAG 2 cut(s) 23, 132
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 2 cut(s) 557, 731
MalI GATC 5 cut(s) 294, 376, 395, 470, 537
MboI GATC 5 cut(s) 292, 374, 393, 468, 535
MboII GAAGA 7 cut(s) 41, 74, 100, 204, 218, 491, 686
MflI RGATCY 2 cut(s) 374, 393
MluCI AATT 6 cut(s) 56, 102, 173, 516, 633, 736
MlyI GAGTC 2 cut(s) 442, 710
MnlI CCTC 3 cut(s) 234, 393, 438
MroXI GAANNNNTTC 2 cut(s) 102, 423
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 604
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 4 cut(s) 8, 113, 500, 704
Mva1269I GAATGC 1 cut(s) 49
MvaI CCWGG 3 cut(s) 113, 500, 704
MwoI GCNNNNNNNGC 1 cut(s) 17
NciI CCSGG 1 cut(s) 8
NdeII GATC 5 cut(s) 292, 374, 393, 468, 535
NlaIII CATG 5 cut(s) 148, 173, 448, 609, 760
NlaIV GGNNCC 2 cut(s) 138, 395
NmuCI GTSAC 2 cut(s) 557, 731
NspI RCATGY 2 cut(s) 609, 760
PaeI GCATGC 1 cut(s) 609
PciI ACATGT 1 cut(s) 756
PctI GAATGC 1 cut(s) 49
PdmI GAANNNNTTC 2 cut(s) 102, 423
PfeI GAWTC 2 cut(s) 158, 593
PflFI GACNNNGTC 1 cut(s) 548
PfoI TCCNGGA 1 cut(s) 111
PkrI GCNGC 2 cut(s) 309, 505
PleI GAGTC 2 cut(s) 442, 710
PpsI GAGTC 2 cut(s) 442, 710
PscI ACATGT 1 cut(s) 756
Psp6I CCWGG 3 cut(s) 111, 498, 702
PspGI CCWGG 3 cut(s) 111, 498, 702
PspN4I GGNNCC 2 cut(s) 138, 395
PspPI GGNCC 2 cut(s) 276, 700
PsuI RGATCY 2 cut(s) 374, 393
PsyI GACNNNGTC 1 cut(s) 548
RseI CAYNNNNRTG 1 cut(s) 604
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 308, 504
Sau3AI GATC 5 cut(s) 292, 374, 393, 468, 535
Sau96I GGNCC 2 cut(s) 276, 700
SchI GAGTC 2 cut(s) 442, 710
ScrFI CCNGG 4 cut(s) 8, 113, 500, 704
SetI ASST 7 cut(s) 28, 213, 240, 304, 497, 549, 630
SfcI CTRYAG 1 cut(s) 352
SinI GGWCC 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 604
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
SphI GCATGC 1 cut(s) 609
Sse9I AATT 6 cut(s) 56, 102, 173, 516, 633, 736
SsiI CCGC 1 cut(s) 308
SspMI CTAG 2 cut(s) 23, 132
StyD4I CCNGG 4 cut(s) 6, 111, 498, 702
TaaI ACNGT 4 cut(s) 328, 353, 410, 691
TaiI ACGT 1 cut(s) 549
TaqI TCGA 3 cut(s) 361, 596, 672
TasI AATT 6 cut(s) 56, 102, 173, 516, 633, 736
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 2 cut(s) 158, 593
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 3 cut(s) 532, 562, 606
TseFI GTSAC 2 cut(s) 557, 731
TseI GCWGC 1 cut(s) 503
Tsp45I GTSAC 2 cut(s) 557, 731
TspDTI ATGAA 3 cut(s) 171, 186, 556
TspRI CASTG 3 cut(s) 532, 562, 606
Tth111I GACNNNGTC 1 cut(s) 548
VpaK11BI GGWCC 1 cut(s) 276
XapI RAATTY 2 cut(s) 102, 173
XceI RCATGY 2 cut(s) 609, 760
XmnI GAANNNNTTC 2 cut(s) 102, 423
XspI CTAG 2 cut(s) 23, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.