Rmu_sc0003342.1_g000038

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003342.1
OG0000419
Physical Location & Seq
Reverse (-)
151457 .. 153766
2310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003342.1_g000038.1.cds

Sequence Viewer

Length: 1059 bp
atgaaaaatatactgaaggacaagaaagtgcctacagtaaaaaagaaagctaatggattcaaaccattagaaaggccagacaagaatcttgttccaaacatgatttttctggatccttcaactagttctactagtattcggcatgaaaatccgaaagaaactcgagatgtcaaaatgatgagcatcttcgggaaaaagaaaggagttcaactcctaaatgttgaagaattcgaatacaatgaaatcgagcatgaggtaaaaaacgcctcaattccaaagctagatttcaaacatatctacaaaaggggaacatttgacatgatggacagccatcacttcaaattacatgaattcacaaccccctcaacaactggagagacagatctcctgatgatcactccagctgaagttgccagagcacaagcaaagaagaaaaatgactgtacacttcgtctgaagttcatatccactcctccagaatggatccaaaaggcaaatggtgaggttgaatatattcctccatatcattatgtgagaattattcaaagaaaatatcttcaaccagcctgtgtagcatataatggccaaccaaattcaagcatcccgtggatgaaggccatggctcttgactacatcaaaaagatcatctctgaagatatcagcaataccttcctggcagcaggagagaaaacaattatcgctgcttacgatcatcctgacgtagtcagcagtgacttattcctatctctaaccagaaaagagatagactcgacaatggcatgcatgcgctgggtggaaaaacttgaaaatgacaaccaccacaagatgtatgttgatacagacgtcaattcaagagaagttccaattacaagaagcagcaggatgaagatcctaaaaagaaattcttcaagaaaaagaagaatactcaacagcatagacaaccaagcaacaaagcttgcagatgttggttgtgcaaagctgaatggcactatgccaatgaatgcccggaaaagggtaaaagatctactaaagctctctttgaagaatatgagcaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

352

Amino Acids

40.5

Weight (kDa)

9.6

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 846
AclWI GGATC 5 cut(s) 107, 120, 478, 491, 883
AcoI YGGCCR 1 cut(s) 583
AcsI RAATTY 4 cut(s) 227, 350, 592, 901
AcuI CTGAAG 4 cut(s) 35, 426, 476, 672
AcyI GRCGYC 1 cut(s) 843
AfaI GTAC 1 cut(s) 445
AfiI CCNNNNNNNGG 2 cut(s) 1011, 1012
AhlI ACTAGT 2 cut(s) 122, 131
AjnI CCWGG 1 cut(s) 672
AluBI AGCT 6 cut(s) 50, 280, 404, 955, 979, 1033
AluI AGCT 6 cut(s) 50, 280, 404, 955, 979, 1033
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 371
AlwI GGATC 5 cut(s) 107, 120, 478, 491, 883
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 3 cut(s) 74, 583, 615
ApeKI GCWGC 3 cut(s) 677, 701, 876
ApoI RAATTY 4 cut(s) 227, 350, 592, 901
Asp700I GAANNNNTTC 2 cut(s) 513, 904
AspLEI GCGC 1 cut(s) 789
AsuC2I CCSGG 1 cut(s) 1006
AsuHPI GGTGA 1 cut(s) 512
AsuII TTCGAA 1 cut(s) 231
AvaI CYCGRG 1 cut(s) 162
BaeI ACNNNNGTAYC 2 cut(s) 828, 861
BalI TGGCCA 1 cut(s) 585
BamHI GGATCC 2 cut(s) 112, 483
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 3 cut(s) 688, 689, 888
BccI CCATC 2 cut(s) 316, 339
BciT130I CCWGG 1 cut(s) 674
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 1 cut(s) 1006
BcoDI GTCTC 1 cut(s) 371
BcuI ACTAGT 2 cut(s) 122, 131
BfaI CTAG 3 cut(s) 123, 132, 281
BfmI CTRYAG 1 cut(s) 33
BglII AGATCT 2 cut(s) 382, 1021
BisI GCNGC 3 cut(s) 678, 702, 877
BlsI GCNGC 3 cut(s) 679, 703, 878
Bme1390I CCNGG 2 cut(s) 674, 1006
BmeT110I CYCGRG 1 cut(s) 162
BmiI GGNNCC 2 cut(s) 114, 485
BmrFI CCNGG 2 cut(s) 674, 1006
BmsI GCATC 2 cut(s) 192, 609
BplI GAGNNNNNCTC 4 cut(s) 195, 227, 752, 784
BpmI CTGGAG 3 cut(s) 384, 393, 459
Bpu14I TTCGAA 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 1006
BsaBI GATNNNNATC 2 cut(s) 182, 887
BsaHI GRCGYC 1 cut(s) 843
BsaJI CCNNGG 2 cut(s) 605, 618
Bsc4I CCNNNNNNNGG 2 cut(s) 1011, 1012
Bse1I ACTGG 1 cut(s) 376
Bse8I GATNNNNATC 2 cut(s) 182, 887
BseBI CCWGG 1 cut(s) 674
BseDI CCNNGG 2 cut(s) 605, 618
BseGI GGATG 4 cut(s) 600, 615, 712, 888
BseJI GATNNNNATC 2 cut(s) 182, 887
BseLI CCNNNNNNNGG 2 cut(s) 1011, 1012
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 1 cut(s) 462
BseXI GCAGC 3 cut(s) 688, 689, 888
BseYI CCCAGC 1 cut(s) 789
BshFI GGCC 3 cut(s) 76, 585, 617
BsiHKAI GWGCWC 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 1 cut(s) 1006
BslI CCNNNNNNNGG 2 cut(s) 1011, 1012
BsmAI GTCTC 1 cut(s) 371
BsmI GAATGC 1 cut(s) 1006
BsnI GGCC 3 cut(s) 76, 585, 617
BsoBI CYCGRG 1 cut(s) 162
Bsp119I TTCGAA 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 421
Bsp1407I TGTACA 1 cut(s) 443
Bsp143I GATC 8 cut(s) 112, 382, 393, 483, 642, 709, 888, 1021
Bsp19I CCATGG 1 cut(s) 618
BspANI GGCC 3 cut(s) 76, 585, 617
BspLI GGNNCC 2 cut(s) 114, 485
BspPI GGATC 5 cut(s) 107, 120, 478, 491, 883
BspT104I TTCGAA 1 cut(s) 231
BsrGI TGTACA 1 cut(s) 443
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 605, 618
BssMI GATC 8 cut(s) 112, 382, 393, 483, 642, 709, 888, 1021
BssNI GRCGYC 1 cut(s) 843
BssT1I CCWWGG 1 cut(s) 618
Bst2UI CCWGG 1 cut(s) 674
Bst4CI ACNGT 2 cut(s) 37, 443
BstACI GRCGYC 1 cut(s) 843
BstAUI TGTACA 1 cut(s) 443
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 3 cut(s) 781, 785, 957
BstDSI CCRYGG 2 cut(s) 605, 618
BstF5I GGATG 4 cut(s) 600, 615, 712, 888
BstHHI GCGC 1 cut(s) 789
BstKTI GATC 8 cut(s) 115, 385, 396, 486, 645, 712, 891, 1024
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 8 cut(s) 112, 382, 393, 483, 642, 709, 888, 1021
BstMWI GCNNNNNNNGC 2 cut(s) 410, 572
BstNI CCWGG 1 cut(s) 674
BstNSI RCATGY 2 cut(s) 783, 787
BstSCI CCNGG 2 cut(s) 672, 1004
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 3 cut(s) 688, 689, 888
BstX2I RGATCY 5 cut(s) 112, 382, 483, 888, 1021
BstYI RGATCY 5 cut(s) 112, 382, 483, 888, 1021
BsuRI GGCC 3 cut(s) 76, 585, 617
BtgI CCRYGG 2 cut(s) 605, 618
BtsCI GGATG 4 cut(s) 600, 615, 712, 888
BtsI GCAGTG 1 cut(s) 736
BtsIMutI CAGTG 1 cut(s) 736
Cac8I GCNNGC 3 cut(s) 781, 785, 957
CfoI GCGC 1 cut(s) 789
Csp6I GTAC 1 cut(s) 444
CviAII CATG 8 cut(s) 100, 143, 251, 319, 347, 619, 780, 784
CviQI GTAC 1 cut(s) 444
DpnI GATC 8 cut(s) 114, 384, 395, 485, 644, 711, 890, 1023
DpnII GATC 8 cut(s) 112, 382, 393, 483, 642, 709, 888, 1021
EaeI YGGCCR 1 cut(s) 583
Eco130I CCWWGG 1 cut(s) 618
Eco32I GATATC 1 cut(s) 658
Eco57I CTGAAG 4 cut(s) 35, 426, 476, 672
Eco88I CYCGRG 1 cut(s) 162
EcoRI GAATTC 2 cut(s) 227, 350
EcoRII CCWGG 1 cut(s) 672
EcoRV GATATC 1 cut(s) 658
EcoT14I CCWWGG 1 cut(s) 618
EcoT22I ATGCAT 1 cut(s) 785
ErhI CCWWGG 1 cut(s) 618
FaeI CATG 8 cut(s) 103, 146, 254, 322, 350, 622, 783, 787
FalI AAGNNNNNCTT 2 cut(s) 889, 921
FatI CATG 8 cut(s) 99, 142, 250, 318, 346, 618, 779, 783
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 3 cut(s) 678, 702, 877
FokI GGATG 4 cut(s) 587, 622, 699, 895
Fsp4HI GCNGC 3 cut(s) 678, 702, 877
FspBI CTAG 3 cut(s) 123, 132, 281
GlaI GCGC 1 cut(s) 788
GluI GCNGC 3 cut(s) 678, 702, 877
GsaI CCCAGC 1 cut(s) 793
GsuI CTGGAG 3 cut(s) 384, 393, 459
HaeIII GGCC 3 cut(s) 76, 585, 617
HapII CCGG 1 cut(s) 1006
HhaI GCGC 1 cut(s) 789
Hin1I GRCGYC 1 cut(s) 843
Hin1II CATG 8 cut(s) 103, 146, 254, 322, 350, 622, 783, 787
Hin6I GCGC 1 cut(s) 787
HinP1I GCGC 1 cut(s) 787
HindIII AAGCTT 1 cut(s) 953
HinfI GANTC 3 cut(s) 57, 85, 767
HpaII CCGG 1 cut(s) 1006
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 3 cut(s) 153, 456, 652
Hpy188III TCNNGA 9 cut(s) 110, 164, 190, 388, 476, 626, 716, 852, 909
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 4 cut(s) 10, 126, 607, 679
HpyCH4III ACNGT 2 cut(s) 37, 443
HpyCH4IV ACGT 2 cut(s) 720, 843
HpyCH4V TGCA 3 cut(s) 783, 959, 974
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 572
HpySE526I ACGT 2 cut(s) 720, 843
Hsp92I GRCGYC 1 cut(s) 843
Hsp92II CATG 8 cut(s) 103, 146, 254, 322, 350, 622, 783, 787
HspAI GCGC 1 cut(s) 787
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 8 cut(s) 112, 382, 393, 483, 642, 709, 888, 1021
Lsp1109I GCAGC 3 cut(s) 688, 689, 888
LweI GCATC 2 cut(s) 192, 609
MaeI CTAG 3 cut(s) 123, 132, 281
MaeII ACGT 2 cut(s) 720, 843
MaeIII GTNAC 1 cut(s) 731
MalI GATC 8 cut(s) 114, 384, 395, 485, 644, 711, 890, 1023
MboI GATC 8 cut(s) 112, 382, 393, 483, 642, 709, 888, 1021
MboII GAAGA 9 cut(s) 178, 236, 442, 548, 665, 897, 898, 930, 1054
MflI RGATCY 5 cut(s) 112, 382, 483, 888, 1021
MhlI GDGCHC 1 cut(s) 421
MlsI TGGCCA 1 cut(s) 585
MluNI TGGCCA 1 cut(s) 585
MlyI GAGTC 1 cut(s) 761
MnlI CCTC 6 cut(s) 247, 277, 373, 483, 496, 528
Mox20I TGGCCA 1 cut(s) 585
Mph1103I ATGCAT 1 cut(s) 785
MroXI GAANNNNTTC 2 cut(s) 513, 904
MscI TGGCCA 1 cut(s) 585
Msp20I TGGCCA 1 cut(s) 585
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 1 cut(s) 1006
MspR9I CCNGG 2 cut(s) 674, 1006
Mva1269I GAATGC 1 cut(s) 1006
MvaI CCWGG 1 cut(s) 674
MwoI GCNNNNNNNGC 2 cut(s) 410, 572
NciI CCSGG 1 cut(s) 1006
NcoI CCATGG 1 cut(s) 618
NdeII GATC 8 cut(s) 112, 382, 393, 483, 642, 709, 888, 1021
NlaIII CATG 8 cut(s) 103, 146, 254, 322, 350, 622, 783, 787
NlaIV GGNNCC 2 cut(s) 114, 485
NmuCI GTSAC 1 cut(s) 731
NsiI ATGCAT 1 cut(s) 785
NspI RCATGY 2 cut(s) 783, 787
NspV TTCGAA 1 cut(s) 231
PaeI GCATGC 2 cut(s) 783, 787
PaeR7I CTCGAG 1 cut(s) 162
PcsI WCGNNNNNNNCGW 1 cut(s) 705
PctI GAATGC 1 cut(s) 1006
PdmI GAANNNNTTC 2 cut(s) 513, 904
PfeI GAWTC 2 cut(s) 57, 85
PflFI GACNNNGTC 1 cut(s) 722
PkrI GCNGC 3 cut(s) 679, 703, 878
PleI GAGTC 1 cut(s) 761
PpsI GAGTC 1 cut(s) 761
Psp6I CCWGG 1 cut(s) 672
PspFI CCCAGC 1 cut(s) 789
PspGI CCWGG 1 cut(s) 672
PspN4I GGNNCC 2 cut(s) 114, 485
PsuI RGATCY 5 cut(s) 112, 382, 483, 888, 1021
PsyI GACNNNGTC 1 cut(s) 722
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 1 cut(s) 445
RsaNI GTAC 1 cut(s) 444
SatI GCNGC 3 cut(s) 678, 702, 877
Sau3AI GATC 8 cut(s) 112, 382, 393, 483, 642, 709, 888, 1021
SchI GAGTC 1 cut(s) 761
ScrFI CCNGG 2 cut(s) 674, 1006
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 2 cut(s) 192, 609
SfcI CTRYAG 1 cut(s) 33
Sfr274I CTCGAG 1 cut(s) 162
SfuI TTCGAA 1 cut(s) 231
SlaI CTCGAG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
SpeI ACTAGT 2 cut(s) 122, 131
SphI GCATGC 2 cut(s) 783, 787
SspMI CTAG 3 cut(s) 123, 132, 281
StyD4I CCNGG 2 cut(s) 672, 1004
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 2 cut(s) 37, 443
TaiI ACGT 2 cut(s) 723, 846
TaqI TCGA 4 cut(s) 163, 231, 246, 770
TatI WGTACW 1 cut(s) 443
TfiI GAWTC 2 cut(s) 57, 85
TscAI CASTG 1 cut(s) 736
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 3 cut(s) 677, 701, 876
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 8 cut(s) 17, 159, 255, 363, 451, 626, 899, 1013
TspRI CASTG 1 cut(s) 736
Tth111I GACNNNGTC 1 cut(s) 722
XapI RAATTY 4 cut(s) 227, 350, 592, 901
XceI RCATGY 2 cut(s) 783, 787
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XhoI CTCGAG 1 cut(s) 162
XmnI GAANNNNTTC 2 cut(s) 513, 904
XspI CTAG 3 cut(s) 123, 132, 281
ZraI GACGTC 1 cut(s) 844
Zsp2I ATGCAT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.