Rmu_sc0000754.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000754.1
OG0000419
Physical Location & Seq
Forward (+)
36051 .. 36377
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000754.1_g000014.1.cds

Sequence Viewer

Length: 327 bp
atgctccgactgaagttcagatctactccttcagaatggatccagaaggcaaacggagaagttgaatatattcctccttatcattatgtaagaattattcaaagaaaatatcttcaaccagcctgtgtagggtacaatggccagccaaactcaagcatcccgtggatgaaggccatgactctagaatatatcaagaagatcatctctgaagatgtcaacaataccttcctggcagcaggagaaaaaatcattatcactgcatacgatcatcctgacgtagtcagcagtgacttattcctatctcttaccagaaaggagatagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.51

Weight (kDa)

7.83

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 34, 47
AcoI YGGCCR 1 cut(s) 139
AcuI CTGAAG 3 cut(s) 15, 32, 228
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 3 cut(s) 65, 101, 116
AjnI CCWGG 1 cut(s) 228
AlwI GGATC 2 cut(s) 34, 47
AoxI GGCC 2 cut(s) 139, 171
ApeKI GCWGC 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 69
BalI TGGCCA 1 cut(s) 141
BamHI GGATCC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 230
BfaI CTAG 1 cut(s) 182
BglII AGATCT 1 cut(s) 20
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 3 cut(s) 156, 171, 268
BseLI CCNNNNNNNGG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 245
BshFI GGCC 2 cut(s) 141, 173
BslI CCNNNNNNNGG 1 cut(s) 129
BsnI GGCC 2 cut(s) 141, 173
Bsp143I GATC 4 cut(s) 20, 39, 198, 265
BspANI GGCC 2 cut(s) 141, 173
BspLI GGNNCC 1 cut(s) 41
BspPI GGATC 2 cut(s) 34, 47
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 4 cut(s) 20, 39, 198, 265
Bst2UI CCWGG 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 3 cut(s) 156, 171, 268
BstKTI GATC 4 cut(s) 23, 42, 201, 268
BstMBI GATC 4 cut(s) 20, 39, 198, 265
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 245
BstX2I RGATCY 2 cut(s) 20, 39
BstYI RGATCY 2 cut(s) 20, 39
BsuRI GGCC 2 cut(s) 141, 173
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 3 cut(s) 156, 171, 268
BtsI GCAGTG 2 cut(s) 255, 292
BtsIMutI CAGTG 2 cut(s) 255, 292
Cac8I GCNNGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 133
CviAII CATG 1 cut(s) 175
CviJI RGCY 4 cut(s) 122, 141, 145, 173
CviKI_1 RGCY 4 cut(s) 122, 141, 145, 173
CviQI GTAC 1 cut(s) 133
DpnI GATC 4 cut(s) 22, 41, 200, 267
DpnII GATC 4 cut(s) 20, 39, 198, 265
EaeI YGGCCR 1 cut(s) 139
Eco57I CTGAAG 3 cut(s) 15, 32, 228
EcoRII CCWGG 1 cut(s) 228
FaeI CATG 1 cut(s) 178
FaiI YATR 5 cut(s) 69, 87, 176, 189, 262
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 3 cut(s) 143, 178, 255
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 182
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 2 cut(s) 141, 173
Hin1II CATG 1 cut(s) 178
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 4 cut(s) 8, 20, 34, 208
Hpy188III TCNNGA 4 cut(s) 43, 182, 193, 272
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 4 cut(s) 39, 40, 163, 235
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 1 cut(s) 178
Kzo9I GATC 4 cut(s) 20, 39, 198, 265
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 9 cut(s) 56, 132, 136, 155, 215, 222, 242, 285, 322
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 287
MalI GATC 4 cut(s) 22, 41, 200, 267
MboI GATC 4 cut(s) 20, 39, 198, 265
MboII GAAGA 3 cut(s) 104, 208, 221
MflI RGATCY 2 cut(s) 20, 39
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 1 cut(s) 93
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 1 cut(s) 84
Mox20I TGGCCA 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 69
MscI TGGCCA 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
NdeII GATC 4 cut(s) 20, 39, 198, 265
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 69
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 41
PsuI RGATCY 2 cut(s) 20, 39
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 4 cut(s) 20, 39, 198, 265
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 230
SetI ASST 2 cut(s) 227, 279
SfaNI GCATC 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 1 cut(s) 93
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 228
TaiI ACGT 1 cut(s) 279
TasI AATT 1 cut(s) 93
TscAI CASTG 2 cut(s) 262, 292
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 2 cut(s) 262, 292
Tth111I GACNNNGTC 1 cut(s) 278
XbaI TCTAGA 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.