Rmu_sc0017650.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017650.1
OG0000419
Physical Location & Seq
Forward (+)
11119 .. 12075
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017650.1_g000005.1.cds

Sequence Viewer

Length: 957 bp
atggctgctgctttgccaaaaagcagaccaactccaactggagttataaatgtttttaattatgaattaagaacttttgatactcctgtgttcagaactggcaggagactagcttatcatcaacaggcaatcctggataatcttttatttgcctttcaagaaagaagcagtggtctaatgttcccagctctctttgctttagctgaagaactctacgaaaatggaagaccacagtctgaagaaatccatatacagcagagtgctgtcagaaaagaaaaaattcacttccttgaaagtcctgaaagtgctagggtccctatcatggcactcaacgaatcagattggcatgaattccacaatctgataggaagacataatccagaagacctagttcctccaactctctttattgtttcaggaccttatgttggacgatacttagtcaatgttcagagtgaacatcctcaagaacacaagctctggcttgttgaaaatggttttgtccataatctgtggacaaaaaaaaatgatgatctgaaaggtttgccaccgattattgtcaacacaatcaaaaacattagaaaaaatgactgtacacttcgactgaagttccgatccactccaccagaatggatccataaggcaaacggtgaagttgaatatattcccccataccattatgtaagaatcattcaaaggaaatatcttcaaccagcctgtgtagggtacaatggccaaccaaactcaagcatcccgtggatgaaggccatggctctagaatatatcaagaagatcatctctgaagatatcagcaataccttcctggcagcaggagagaaaattattgtcactgcatacgatcatcctgacgtagtcagcagtgacatattcctatctctcaccaaaaaaagagatagattcgacaatggcgtgcatgcgctgggtggaaaagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

36.42

Weight (kDa)

8.37

Isoelectric Point (pI)

56.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 47
AclWI GGATC 3 cut(s) 609, 628, 641
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 2 cut(s) 279, 350
AcuI CTGAAG 4 cut(s) 225, 258, 626, 822
AfaI GTAC 2 cut(s) 595, 728
AfiI CCNNNNNNNGG 3 cut(s) 322, 428, 723
AgsI TTSAA 6 cut(s) 158, 293, 491, 659, 695, 710
AjnI CCWGG 2 cut(s) 132, 822
AluBI AGCT 5 cut(s) 113, 188, 203, 478, 953
AluI AGCT 5 cut(s) 113, 188, 203, 478, 953
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 3 cut(s) 609, 628, 641
AoxI GGCC 2 cut(s) 733, 765
ApeKI GCWGC 3 cut(s) 5, 8, 827
ApoI RAATTY 2 cut(s) 279, 350
Asp700I GAANNNNTTC 2 cut(s) 279, 663
AspLEI GCGC 1 cut(s) 940
AspS9I GGNCC 2 cut(s) 313, 419
AsuHPI GGTGA 2 cut(s) 662, 892
AvaII GGWCC 2 cut(s) 313, 419
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BalI TGGCCA 1 cut(s) 735
BamHI GGATCC 1 cut(s) 633
BbsI GAAGAC 3 cut(s) 232, 376, 390
BbvI GCAGC 1 cut(s) 839
BciT130I CCWGG 2 cut(s) 134, 824
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 4 cut(s) 110, 309, 389, 776
BisI GCNGC 3 cut(s) 6, 9, 828
BlsI GCNGC 3 cut(s) 7, 10, 829
Bme1390I CCNGG 2 cut(s) 134, 824
Bme18I GGWCC 2 cut(s) 313, 419
BmgT120I GGNCC 2 cut(s) 313, 419
BmiI GGNNCC 3 cut(s) 314, 315, 635
BmrFI CCNGG 2 cut(s) 134, 824
BmsI GCATC 1 cut(s) 759
BoxI GACNNNNGTC 1 cut(s) 232
BpiI GAAGAC 3 cut(s) 232, 376, 390
BpmI CTGGAG 1 cut(s) 60
BpuEI CTTGAG 2 cut(s) 450, 730
BsaJI CCNNGG 2 cut(s) 755, 768
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 428, 723
Bse1I ACTGG 2 cut(s) 43, 103
BseBI CCWGG 2 cut(s) 134, 824
BseDI CCNNGG 2 cut(s) 755, 768
BseGI GGATG 4 cut(s) 460, 750, 765, 862
BseLI CCNNNNNNNGG 3 cut(s) 322, 428, 723
BseNI ACTGG 2 cut(s) 43, 103
BseXI GCAGC 1 cut(s) 839
BseYI CCCAGC 2 cut(s) 184, 940
BshFI GGCC 2 cut(s) 735, 767
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 3 cut(s) 322, 428, 723
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 2 cut(s) 735, 767
Bsp1407I TGTACA 1 cut(s) 593
Bsp143I GATC 5 cut(s) 532, 614, 633, 792, 859
Bsp19I CCATGG 1 cut(s) 768
BspANI GGCC 2 cut(s) 735, 767
BspLI GGNNCC 3 cut(s) 314, 315, 635
BspPI GGATC 3 cut(s) 609, 628, 641
BsrGI TGTACA 1 cut(s) 593
BsrI ACTGG 2 cut(s) 43, 103
BssECI CCNNGG 2 cut(s) 755, 768
BssMI GATC 5 cut(s) 532, 614, 633, 792, 859
BssT1I CCWWGG 1 cut(s) 768
Bst2UI CCWGG 2 cut(s) 134, 824
Bst4CI ACNGT 3 cut(s) 234, 593, 650
BstAUI TGTACA 1 cut(s) 593
BstC8I GCNNGC 2 cut(s) 932, 936
BstDEI CTNAG 1 cut(s) 439
BstDSI CCRYGG 2 cut(s) 755, 768
BstF5I GGATG 4 cut(s) 460, 750, 765, 862
BstHHI GCGC 1 cut(s) 940
BstKTI GATC 5 cut(s) 535, 617, 636, 795, 862
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 5 cut(s) 532, 614, 633, 792, 859
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 2 cut(s) 134, 824
BstNSI RCATGY 1 cut(s) 938
BstPAI GACNNNNGTC 1 cut(s) 232
BstSCI CCNGG 2 cut(s) 132, 822
BstV1I GCAGC 1 cut(s) 839
BstV2I GAAGAC 3 cut(s) 232, 376, 390
BstX2I RGATCY 1 cut(s) 633
BstXI CCANNNNNNTGG 1 cut(s) 630
BstYI RGATCY 1 cut(s) 633
BsuRI GGCC 2 cut(s) 735, 767
BtgI CCRYGG 2 cut(s) 755, 768
BtsCI GGATG 4 cut(s) 460, 750, 765, 862
BtsI GCAGTG 3 cut(s) 175, 849, 886
BtsIMutI CAGTG 3 cut(s) 175, 849, 886
Cac8I GCNNGC 2 cut(s) 932, 936
CfoI GCGC 1 cut(s) 940
Cfr13I GGNCC 2 cut(s) 313, 419
Csp6I GTAC 2 cut(s) 594, 727
CviAII CATG 4 cut(s) 322, 347, 769, 935
CviQI GTAC 2 cut(s) 594, 727
DdeI CTNAG 1 cut(s) 439
DpnI GATC 5 cut(s) 534, 616, 635, 794, 861
DpnII GATC 5 cut(s) 532, 614, 633, 792, 859
EaeI YGGCCR 1 cut(s) 733
Eco130I CCWWGG 1 cut(s) 768
Eco32I GATATC 1 cut(s) 808
Eco47I GGWCC 2 cut(s) 313, 419
Eco57I CTGAAG 4 cut(s) 225, 258, 626, 822
EcoO109I RGGNCCY 2 cut(s) 313, 419
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 2 cut(s) 132, 822
EcoRV GATATC 1 cut(s) 808
EcoT14I CCWWGG 1 cut(s) 768
ErhI CCWWGG 1 cut(s) 768
FaeI CATG 4 cut(s) 325, 350, 772, 938
FaqI GGGAC 1 cut(s) 299
FatI CATG 4 cut(s) 321, 346, 768, 934
Fnu4HI GCNGC 3 cut(s) 6, 9, 828
FokI GGATG 4 cut(s) 447, 737, 772, 849
Fsp4HI GCNGC 3 cut(s) 6, 9, 828
FspBI CTAG 4 cut(s) 110, 309, 389, 776
GlaI GCGC 1 cut(s) 939
GluI GCNGC 3 cut(s) 6, 9, 828
GsaI CCCAGC 2 cut(s) 188, 944
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 2 cut(s) 735, 767
HhaI GCGC 1 cut(s) 940
Hin1II CATG 4 cut(s) 325, 350, 772, 938
Hin6I GCGC 1 cut(s) 938
HinP1I GCGC 1 cut(s) 938
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HindIII AAGCTT 1 cut(s) 951
HinfI GANTC 3 cut(s) 335, 687, 918
HphI GGTGA 2 cut(s) 662, 892
Hpy166II GTNNAC 4 cut(s) 458, 516, 562, 596
Hpy188I TCNGA 9 cut(s) 95, 238, 269, 340, 363, 453, 537, 614, 802
Hpy188III TCNNGA 8 cut(s) 158, 299, 380, 417, 467, 776, 787, 866
Hpy8I GTNNAC 4 cut(s) 458, 516, 562, 596
HpyAV CCTTC 2 cut(s) 757, 829
HpyCH4III ACNGT 3 cut(s) 234, 593, 650
HpyCH4IV ACGT 1 cut(s) 870
HpyCH4V TGCA 2 cut(s) 854, 934
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 439
HpySE526I ACGT 1 cut(s) 870
Hsp92II CATG 4 cut(s) 325, 350, 772, 938
HspAI GCGC 1 cut(s) 938
KflI GGGWCCC 1 cut(s) 313
Kzo9I GATC 5 cut(s) 532, 614, 633, 792, 859
Lsp1109I GCAGC 1 cut(s) 839
LweI GCATC 1 cut(s) 759
MaeI CTAG 4 cut(s) 110, 309, 389, 776
MaeII ACGT 1 cut(s) 870
MaeIII GTNAC 2 cut(s) 847, 881
MalI GATC 5 cut(s) 534, 616, 635, 794, 861
MboI GATC 5 cut(s) 532, 614, 633, 792, 859
MboII GAAGA 8 cut(s) 218, 237, 251, 381, 395, 698, 802, 815
MflI RGATCY 1 cut(s) 633
MlsI TGGCCA 1 cut(s) 735
MluCI AATT 5 cut(s) 58, 65, 279, 350, 840
MluNI TGGCCA 1 cut(s) 735
MmeI TCCRAC 3 cut(s) 59, 409, 422
MnlI CCTC 2 cut(s) 405, 474
Mox20I TGGCCA 1 cut(s) 735
MroXI GAANNNNTTC 2 cut(s) 279, 663
MscI TGGCCA 1 cut(s) 735
MseI TTAA 2 cut(s) 57, 68
MslI CAYNNNNRTG 1 cut(s) 628
Msp20I TGGCCA 1 cut(s) 735
MspR9I CCNGG 2 cut(s) 134, 824
MvaI CCWGG 2 cut(s) 134, 824
MwoI GCNNNNNNNGC 1 cut(s) 194
NcoI CCATGG 1 cut(s) 768
NdeII GATC 5 cut(s) 532, 614, 633, 792, 859
NlaIII CATG 4 cut(s) 325, 350, 772, 938
NlaIV GGNNCC 3 cut(s) 314, 315, 635
NmuCI GTSAC 2 cut(s) 847, 881
NspI RCATGY 1 cut(s) 938
PaeI GCATGC 1 cut(s) 938
PcsI WCGNNNNNNNCGW 1 cut(s) 927
PdmI GAANNNNTTC 2 cut(s) 279, 663
PfeI GAWTC 3 cut(s) 335, 687, 918
PflFI GACNNNGTC 1 cut(s) 872
PfoI TCCNGGA 1 cut(s) 132
PkrI GCNGC 3 cut(s) 7, 10, 829
PpuMI RGGWCCY 2 cut(s) 313, 419
PshAI GACNNNNGTC 1 cut(s) 232
PsiI TTATAA 1 cut(s) 47
Psp5II RGGWCCY 2 cut(s) 313, 419
Psp6I CCWGG 2 cut(s) 132, 822
PspFI CCCAGC 2 cut(s) 184, 940
PspGI CCWGG 2 cut(s) 132, 822
PspN4I GGNNCC 3 cut(s) 314, 315, 635
PspPI GGNCC 2 cut(s) 313, 419
PspPPI RGGWCCY 2 cut(s) 313, 419
PsrI GAACNNNNNNTAC 2 cut(s) 64, 96
PsuI RGATCY 1 cut(s) 633
PsyI GACNNNGTC 1 cut(s) 872
RsaI GTAC 2 cut(s) 595, 728
RsaNI GTAC 2 cut(s) 594, 727
RseI CAYNNNNRTG 1 cut(s) 628
SaqAI TTAA 2 cut(s) 57, 68
SatI GCNGC 3 cut(s) 6, 9, 828
Sau3AI GATC 5 cut(s) 532, 614, 633, 792, 859
Sau96I GGNCC 2 cut(s) 313, 419
ScrFI CCNGG 2 cut(s) 134, 824
SfaNI GCATC 1 cut(s) 759
SinI GGWCC 2 cut(s) 313, 419
SmiMI CAYNNNNRTG 1 cut(s) 628
SmlI CTYRAG 2 cut(s) 465, 745
SmoI CTYRAG 2 cut(s) 465, 745
SphI GCATGC 1 cut(s) 938
Sse9I AATT 5 cut(s) 58, 65, 279, 350, 840
SspMI CTAG 4 cut(s) 110, 309, 389, 776
StyD4I CCNGG 2 cut(s) 132, 822
StyI CCWWGG 1 cut(s) 768
TaaI ACNGT 3 cut(s) 234, 593, 650
TaiI ACGT 1 cut(s) 873
TaqI TCGA 2 cut(s) 601, 921
TasI AATT 5 cut(s) 58, 65, 279, 350, 840
TatI WGTACW 1 cut(s) 593
TfiI GAWTC 3 cut(s) 335, 687, 918
Tru1I TTAA 2 cut(s) 57, 68
Tru9I TTAA 2 cut(s) 57, 68
TscAI CASTG 3 cut(s) 175, 856, 886
TseFI GTSAC 2 cut(s) 847, 881
TseI GCWGC 3 cut(s) 5, 8, 827
Tsp45I GTSAC 2 cut(s) 847, 881
TspDTI ATGAA 3 cut(s) 78, 363, 776
TspRI CASTG 3 cut(s) 175, 856, 886
Tth111I GACNNNGTC 1 cut(s) 872
VpaK11BI GGWCC 2 cut(s) 313, 419
XapI RAATTY 2 cut(s) 279, 350
XbaI TCTAGA 1 cut(s) 775
XceI RCATGY 1 cut(s) 938
XmnI GAANNNNTTC 2 cut(s) 279, 663
XspI CTAG 4 cut(s) 110, 309, 389, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.