Rmu_sc0001323.1_g000017

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001323.1
OG0000419
Physical Location & Seq
Forward (+)
59001 .. 59492
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001323.1_g000017.1.cds

Sequence Viewer

Length: 492 bp
atgcttcgtctgaagtttagatccactcctctaaaatggattcagaaggcaaatggtgaggttgagtatatttctccatatcattatgtgagaataattcaaagaaaatatcttcagcctgcctgtgttggatacaatggccagccaaactcaagcatcccatggatgaaagccatggctctggaatatattaaaaagatcatctctgaagacatcaacaataccttcctggcagcaggagaaaaaactataatcactgcttacgatcatcctgatgtagtcagcagtgacctgttcctatctctcaccagaaaagagatagattcgacactggcctgcttacagtggattgaaaagcttgaaacagacaaccactataaaatgtatgttgatacagatgtcgaagacaatgcaacaactgctcgtatggcccaggcagacaacgactcgtttgtctttagtcacaattcagaaacagacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

163

Amino Acids

18.82

Weight (kDa)

5.18

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 452
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 139
AcuI CTGAAG 3 cut(s) 32, 98, 228
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 3 cut(s) 101, 353, 362
AjnI CCWGG 2 cut(s) 228, 432
AluBI AGCT 1 cut(s) 358
AluI AGCT 1 cut(s) 358
AlwI GGATC 1 cut(s) 15
AoxI GGCC 3 cut(s) 139, 333, 429
ApeKI GCWGC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 2 cut(s) 68, 298
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BalI TGGCCA 1 cut(s) 141
BbsI GAAGAC 2 cut(s) 216, 411
BbvI GCAGC 1 cut(s) 245
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 2 cut(s) 230, 434
BciVI GTATCC 1 cut(s) 125
BfuI GTATCC 1 cut(s) 125
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 2 cut(s) 230, 434
BmgT120I GGNCC 1 cut(s) 430
BmrFI CCNGG 2 cut(s) 230, 434
BmsI GCATC 1 cut(s) 165
BpiI GAAGAC 2 cut(s) 216, 411
BpuEI CTTGAG 1 cut(s) 136
BsaJI CCNNGG 3 cut(s) 161, 174, 432
Bse1I ACTGG 1 cut(s) 336
BseBI CCWGG 2 cut(s) 230, 434
BseDI CCNNGG 3 cut(s) 161, 174, 432
BseGI GGATG 3 cut(s) 156, 171, 268
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 245
BshFI GGCC 3 cut(s) 141, 335, 431
BsnI GGCC 3 cut(s) 141, 335, 431
Bsp143I GATC 3 cut(s) 20, 198, 265
Bsp19I CCATGG 2 cut(s) 161, 174
BspANI GGCC 3 cut(s) 141, 335, 431
BspPI GGATC 1 cut(s) 15
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 3 cut(s) 161, 174, 432
BssMI GATC 3 cut(s) 20, 198, 265
BssT1I CCWWGG 2 cut(s) 161, 174
Bst2UI CCWGG 2 cut(s) 230, 434
Bst4CI ACNGT 1 cut(s) 345
BstAPI GCANNNNNTGC 1 cut(s) 419
BstC8I GCNNGC 3 cut(s) 120, 143, 337
BstDSI CCRYGG 2 cut(s) 161, 174
BstF5I GGATG 3 cut(s) 156, 171, 268
BstKTI GATC 3 cut(s) 23, 201, 268
BstMBI GATC 3 cut(s) 20, 198, 265
BstMWI GCNNNNNNNGC 2 cut(s) 419, 428
BstNI CCWGG 2 cut(s) 230, 434
BstNSI RCATGY 1 cut(s) 490
BstSCI CCNGG 2 cut(s) 228, 432
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 2 cut(s) 216, 411
BstX2I RGATCY 1 cut(s) 20
BstXI CCANNNNNNTGG 1 cut(s) 181
BstYI RGATCY 1 cut(s) 20
BsuI GTATCC 1 cut(s) 125
BsuRI GGCC 3 cut(s) 141, 335, 431
BtgI CCRYGG 2 cut(s) 161, 174
BtsCI GGATG 3 cut(s) 156, 171, 268
BtsI GCAGTG 2 cut(s) 255, 292
BtsIMutI CAGTG 4 cut(s) 255, 292, 329, 350
Cac8I GCNNGC 3 cut(s) 120, 143, 337
Cfr13I GGNCC 1 cut(s) 430
CviAII CATG 3 cut(s) 162, 175, 487
CviJI RGCY 8 cut(s) 118, 141, 145, 173, 179, 335, 358, 431
CviKI_1 RGCY 8 cut(s) 118, 141, 145, 173, 179, 335, 358, 431
DpnI GATC 3 cut(s) 22, 200, 267
DpnII GATC 3 cut(s) 20, 198, 265
DrdI GACNNNNNNGTC 1 cut(s) 452
DseDI GACNNNNNNGTC 1 cut(s) 452
EaeI YGGCCR 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 161, 174
Eco57I CTGAAG 3 cut(s) 32, 98, 228
EcoRII CCWGG 2 cut(s) 228, 432
EcoT14I CCWWGG 2 cut(s) 161, 174
ErhI CCWWGG 2 cut(s) 161, 174
FaeI CATG 3 cut(s) 165, 178, 490
FatI CATG 3 cut(s) 161, 174, 486
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 3 cut(s) 143, 178, 255
Fsp4HI GCNGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 3 cut(s) 141, 335, 431
Hin1II CATG 3 cut(s) 165, 178, 490
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 3 cut(s) 40, 323, 446
HphI GGTGA 2 cut(s) 68, 298
Hpy188I TCNGA 4 cut(s) 12, 45, 208, 472
Hpy188III TCNNGA 2 cut(s) 182, 272
HpyAV CCTTC 2 cut(s) 40, 235
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 428
Hsp92II CATG 3 cut(s) 165, 178, 490
Kzo9I GATC 3 cut(s) 20, 198, 265
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 287, 461
MalI GATC 3 cut(s) 22, 200, 267
MboI GATC 3 cut(s) 20, 198, 265
MboII GAAGA 3 cut(s) 104, 221, 416
MflI RGATCY 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 2 cut(s) 96, 466
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 2 cut(s) 39, 52
Mox20I TGGCCA 1 cut(s) 141
MscI TGGCCA 1 cut(s) 141
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 273
Msp20I TGGCCA 1 cut(s) 141
MspR9I CCNGG 2 cut(s) 230, 434
MvaI CCWGG 2 cut(s) 230, 434
MwoI GCNNNNNNNGC 2 cut(s) 419, 428
NcoI CCATGG 2 cut(s) 161, 174
NdeII GATC 3 cut(s) 20, 198, 265
NlaIII CATG 3 cut(s) 165, 178, 490
NmuCI GTSAC 2 cut(s) 287, 461
NspI RCATGY 1 cut(s) 490
PciI ACATGT 1 cut(s) 486
PfeI GAWTC 2 cut(s) 40, 323
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
PscI ACATGT 1 cut(s) 486
Psp6I CCWGG 2 cut(s) 228, 432
PspGI CCWGG 2 cut(s) 228, 432
PspPI GGNCC 1 cut(s) 430
PsuI RGATCY 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 3 cut(s) 20, 198, 265
Sau96I GGNCC 1 cut(s) 430
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 2 cut(s) 230, 434
SetI ASST 4 cut(s) 63, 227, 294, 360
SfaNI GCATC 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 2 cut(s) 96, 466
StyD4I CCNGG 2 cut(s) 228, 432
StyI CCWWGG 2 cut(s) 161, 174
TaaI ACNGT 1 cut(s) 345
TaqI TCGA 2 cut(s) 326, 402
TasI AATT 2 cut(s) 96, 466
TfiI GAWTC 2 cut(s) 40, 323
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 4 cut(s) 262, 292, 336, 350
TseFI GTSAC 2 cut(s) 287, 461
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 2 cut(s) 287, 461
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 4 cut(s) 262, 292, 336, 350
XceI RCATGY 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.