Rmu_sc0002187.1_g000010

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002187.1
OG0000419
Physical Location & Seq
Forward (+)
30206 .. 31194
989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002187.1_g000010.1.cds

Sequence Viewer

Length: 630 bp
atgacttcagaggagggaggcgaagctgctggacttggtttggaggcaaacggtggccggaagagggagaactcgaccggcgaaggaggctctgctttccgtcgtcttcgttttcgtgaggaagagagagagaaccgtatgcttcgactgaagttcagatccactcctccagaatggatccataaggcaaacggtgaagttgaatatattcctccttatcattatgtaagaatcattcaaaggaaatatcttcaaccagcctgtgtaggatacaatggccaaccaaactcaagcatcccatggatgaaggccatgactctagaatatatcaagaagatcatctctgaagacgtccacaacaccttcctggcagcaggagaaaaaattattatcactgcttacgatcatcttgatgtagtcagtagtgatttattcctatctcttaccagaaaggagatagactcgacactggcatgcttacgatgggtggaaaagcttgaaactgacaaccactacaagatgtatgttgatacagatgtcgaagacaatgcaacaacagcaataatggcccaggcagataacgactcgtttgtcctcggtcacaattcagaaacagacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

209

Amino Acids

23.84

Weight (kDa)

5.23

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 590
AatII GACGTC 1 cut(s) 354
AclWI GGATC 3 cut(s) 153, 172, 185
AcoI YGGCCR 2 cut(s) 55, 277
AcuI CTGAAG 2 cut(s) 170, 366
AcyI GRCGYC 1 cut(s) 351
AfiI CCNNNNNNNGG 1 cut(s) 64
AflIII ACRYGT 1 cut(s) 624
AgsI TTSAA 4 cut(s) 203, 239, 254, 500
AjnI CCWGG 2 cut(s) 366, 570
AluBI AGCT 2 cut(s) 26, 496
AluI AGCT 2 cut(s) 26, 496
AlwI GGATC 3 cut(s) 153, 172, 185
AoxI GGCC 4 cut(s) 55, 277, 309, 567
ApeKI GCWGC 2 cut(s) 26, 371
Asp700I GAANNNNTTC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 568
AsuHPI GGTGA 1 cut(s) 206
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BalI TGGCCA 1 cut(s) 279
BamHI GGATCC 1 cut(s) 177
BbsI GAAGAC 3 cut(s) 98, 354, 549
BbvI GCAGC 2 cut(s) 13, 383
BccI CCATC 1 cut(s) 477
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BciT130I CCWGG 2 cut(s) 368, 572
BciVI GTATCC 1 cut(s) 263
BfaI CTAG 1 cut(s) 320
BfuI GTATCC 1 cut(s) 263
BisI GCNGC 2 cut(s) 27, 372
BlsI GCNGC 2 cut(s) 28, 373
Bme1390I CCNGG 2 cut(s) 368, 572
BmgT120I GGNCC 1 cut(s) 568
BmiI GGNNCC 1 cut(s) 179
BmrFI CCNGG 2 cut(s) 368, 572
BmsI GCATC 1 cut(s) 303
BpiI GAAGAC 3 cut(s) 98, 354, 549
BplI GAGNNNNNCTC 2 cut(s) 446, 478
BpmI CTGGAG 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 274
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 3 cut(s) 299, 570, 595
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 474
BseBI CCWGG 2 cut(s) 368, 572
BseDI CCNNGG 3 cut(s) 299, 570, 595
BseGI GGATG 2 cut(s) 294, 309
BseLI CCNNNNNNNGG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 474
BseRI GAGGAG 2 cut(s) 26, 156
BseXI GCAGC 2 cut(s) 13, 383
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 4 cut(s) 57, 279, 311, 569
BsiEI CGRYCG 1 cut(s) 78
BsiSI CCGG 2 cut(s) 58, 78
BslI CCNNNNNNNGG 1 cut(s) 64
BsnI GGCC 4 cut(s) 57, 279, 311, 569
Bsp143I GATC 4 cut(s) 158, 177, 336, 403
Bsp19I CCATGG 1 cut(s) 299
BspANI GGCC 4 cut(s) 57, 279, 311, 569
BspLI GGNNCC 1 cut(s) 179
BspPI GGATC 3 cut(s) 153, 172, 185
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 1 cut(s) 474
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 3 cut(s) 299, 570, 595
BssMI GATC 4 cut(s) 158, 177, 336, 403
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 299
Bst2UI CCWGG 2 cut(s) 368, 572
Bst4CI ACNGT 3 cut(s) 53, 137, 194
Bst6I CTCTTC 2 cut(s) 56, 117
BstACI GRCGYC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 475
BstDSI CCRYGG 1 cut(s) 299
BstF5I GGATG 2 cut(s) 294, 309
BstKTI GATC 4 cut(s) 161, 180, 339, 406
BstMBI GATC 4 cut(s) 158, 177, 336, 403
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 3 cut(s) 87, 557, 566
BstNI CCWGG 2 cut(s) 368, 572
BstNSI RCATGY 2 cut(s) 477, 628
BstSCI CCNGG 2 cut(s) 366, 570
BstV1I GCAGC 2 cut(s) 13, 383
BstV2I GAAGAC 3 cut(s) 98, 354, 549
BstX2I RGATCY 2 cut(s) 158, 177
BstYI RGATCY 2 cut(s) 158, 177
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 4 cut(s) 57, 279, 311, 569
BtgI CCRYGG 1 cut(s) 299
BtsCI GGATG 2 cut(s) 294, 309
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 2 cut(s) 393, 467
Cac8I GCNNGC 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 568
CviAII CATG 4 cut(s) 300, 313, 474, 625
CviJI RGCY 8 cut(s) 26, 57, 90, 260, 279, 311, 496, 569
CviKI_1 RGCY 8 cut(s) 26, 57, 90, 260, 279, 311, 496, 569
DpnI GATC 4 cut(s) 160, 179, 338, 405
DpnII GATC 4 cut(s) 158, 177, 336, 403
DrdI GACNNNNNNGTC 1 cut(s) 590
DseDI GACNNNNNNGTC 1 cut(s) 590
EaeI YGGCCR 2 cut(s) 55, 277
Eam1104I CTCTTC 2 cut(s) 56, 117
EarI CTCTTC 2 cut(s) 56, 117
Eco130I CCWWGG 1 cut(s) 299
Eco57I CTGAAG 2 cut(s) 170, 366
EcoRII CCWGG 2 cut(s) 366, 570
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 4 cut(s) 303, 316, 477, 628
FatI CATG 4 cut(s) 299, 312, 473, 624
Fnu4HI GCNGC 2 cut(s) 27, 372
FokI GGATG 2 cut(s) 281, 316
Fsp4HI GCNGC 2 cut(s) 27, 372
FspBI CTAG 1 cut(s) 320
GluI GCNGC 2 cut(s) 27, 372
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 4 cut(s) 57, 279, 311, 569
HapII CCGG 2 cut(s) 58, 78
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 4 cut(s) 303, 316, 477, 628
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 4 cut(s) 231, 316, 461, 584
HpaII CCGG 2 cut(s) 58, 78
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 4 cut(s) 10, 158, 346, 610
Hpy188III TCNNGA 5 cut(s) 116, 170, 320, 331, 410
Hpy8I GTNNAC 1 cut(s) 355
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 3 cut(s) 77, 301, 373
HpyCH4III ACNGT 3 cut(s) 53, 137, 194
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 1 cut(s) 551
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 557, 566
HpySE526I ACGT 1 cut(s) 351
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 4 cut(s) 303, 316, 477, 628
Kzo9I GATC 4 cut(s) 158, 177, 336, 403
Lsp1109I GCAGC 2 cut(s) 13, 383
LweI GCATC 1 cut(s) 303
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 599
MalI GATC 4 cut(s) 160, 179, 338, 405
MboI GATC 4 cut(s) 158, 177, 336, 403
MboII GAAGA 7 cut(s) 73, 98, 134, 242, 346, 359, 554
MflI RGATCY 2 cut(s) 158, 177
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 2 cut(s) 384, 604
MluNI TGGCCA 1 cut(s) 279
MlyI GAGTC 3 cut(s) 310, 455, 578
Mox20I TGGCCA 1 cut(s) 279
MroXI GAANNNNTTC 1 cut(s) 207
MscI TGGCCA 1 cut(s) 279
MslI CAYNNNNRTG 2 cut(s) 411, 472
Msp20I TGGCCA 1 cut(s) 279
MspI CCGG 2 cut(s) 58, 78
MspR9I CCNGG 2 cut(s) 368, 572
MvaI CCWGG 2 cut(s) 368, 572
MwoI GCNNNNNNNGC 3 cut(s) 87, 557, 566
NcoI CCATGG 1 cut(s) 299
NdeII GATC 4 cut(s) 158, 177, 336, 403
NlaIII CATG 4 cut(s) 303, 316, 477, 628
NlaIV GGNNCC 1 cut(s) 179
NmuCI GTSAC 1 cut(s) 599
NspI RCATGY 2 cut(s) 477, 628
PaeI GCATGC 1 cut(s) 477
PciI ACATGT 1 cut(s) 624
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 231
PkrI GCNGC 2 cut(s) 28, 373
PleI GAGTC 3 cut(s) 310, 455, 578
PpsI GAGTC 3 cut(s) 310, 455, 578
PscI ACATGT 1 cut(s) 624
Psp6I CCWGG 2 cut(s) 366, 570
PspGI CCWGG 2 cut(s) 366, 570
PspN4I GGNNCC 1 cut(s) 179
PspPI GGNCC 1 cut(s) 568
PsuI RGATCY 2 cut(s) 158, 177
RseI CAYNNNNRTG 2 cut(s) 411, 472
SatI GCNGC 2 cut(s) 27, 372
Sau3AI GATC 4 cut(s) 158, 177, 336, 403
Sau96I GGNCC 1 cut(s) 568
SchI GAGTC 3 cut(s) 310, 455, 578
ScrFI CCNGG 2 cut(s) 368, 572
SetI ASST 4 cut(s) 28, 354, 365, 498
SfaNI GCATC 1 cut(s) 303
SmiMI CAYNNNNRTG 2 cut(s) 411, 472
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
SphI GCATGC 1 cut(s) 477
Sse9I AATT 2 cut(s) 384, 604
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 2 cut(s) 366, 570
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 3 cut(s) 53, 137, 194
TaiI ACGT 1 cut(s) 354
TaqI TCGA 4 cut(s) 74, 145, 464, 540
TaqII GACCGA 1 cut(s) 587
TasI AATT 2 cut(s) 384, 604
TfiI GAWTC 1 cut(s) 231
TscAI CASTG 2 cut(s) 400, 474
TseFI GTSAC 1 cut(s) 599
TseI GCWGC 2 cut(s) 26, 371
Tsp45I GTSAC 1 cut(s) 599
TspDTI ATGAA 1 cut(s) 320
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 2 cut(s) 400, 474
XbaI TCTAGA 1 cut(s) 319
XceI RCATGY 2 cut(s) 477, 628
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 320
ZraI GACGTC 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.