Rmu_sc0006196.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006196.1
OG0000419
Physical Location & Seq
Forward (+)
9808 .. 10563
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006196.1_g000003.1.cds

Sequence Viewer

Length: 756 bp
atgttcctagctctctttgcattagctgaagaactctatgaaaatggaagaccacagtttgaagaacttcatacacagcagagtgctgttagaaaagaaaaaattcacttcctagaatatccagaaagtgctagggtccctatcatagcactcaaagaatcagagtggcatgaattccatagtctgataggaagtcataattctgaagaccgtattcctccaactctcttcattattgcacgaccatatgttggaagatacttagtcaatgttcagagtgaacatcctcaggaacacaagctttggcttgttgaaaatggttttgtccataatctgtggactaaaacaaatgatgatctgaaaggtttgcctcccatcatcgtcaatacagtcaagaacattagaaaaaatgactgcatgcttcgtctgaagttcagatccactcccccagaatggatccaaaaggcaaacggtgaggttgagtacatttcttcatatcattatgtgagaattattcaaagaaaatatcttcaacctgcctgtgttggatacaatggccagccaaactcaagcgtcctatggatgaaagccatggccttggaatacatcaaaaagatcatctctgaagatatcaacaataccttcctagcagcaataggtctcatcgtagtcgattccaggggcattgtgagaagccttgagccacaaggcgagcattgtatcttacaatctcgtttctctaattacactttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

29.19

Weight (kDa)

7.16

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 544
AccB7I CCANNNNNTGG 1 cut(s) 251
AclWI GGATC 3 cut(s) 432, 451, 464
AcoI YGGCCR 1 cut(s) 556
AcsI RAATTY 2 cut(s) 102, 173
AcuI CTGAAG 4 cut(s) 48, 225, 449, 645
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 2 cut(s) 251, 453
AgsI TTSAA 4 cut(s) 62, 314, 518, 533
AjnI CCWGG 1 cut(s) 677
AluBI AGCT 3 cut(s) 11, 26, 301
AluI AGCT 3 cut(s) 11, 26, 301
Alw26I GTCTC 1 cut(s) 665
AlwI GGATC 3 cut(s) 432, 451, 464
AoxI GGCC 2 cut(s) 556, 594
ApeKI GCWGC 1 cut(s) 650
ApoI RAATTY 2 cut(s) 102, 173
Asp700I GAANNNNTTC 2 cut(s) 66, 102
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 485
AvaII GGWCC 1 cut(s) 136
AxyI CCTNAGG 1 cut(s) 288
BalI TGGCCA 1 cut(s) 558
BamHI GGATCC 1 cut(s) 456
BbsI GAAGAC 2 cut(s) 55, 213
BbvI GCAGC 1 cut(s) 662
BccI CCATC 1 cut(s) 383
BciT130I CCWGG 1 cut(s) 679
BciVI GTATCC 1 cut(s) 542
BcoDI GTCTC 1 cut(s) 665
BfaI CTAG 4 cut(s) 8, 113, 132, 647
BfuAI ACCTGC 1 cut(s) 544
BfuI GTATCC 1 cut(s) 542
BisI GCNGC 1 cut(s) 651
BlsI GCNGC 1 cut(s) 652
Bme1390I CCNGG 1 cut(s) 679
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 3 cut(s) 137, 138, 458
BmrFI CCNGG 1 cut(s) 679
BpiI GAAGAC 2 cut(s) 55, 213
BpuEI CTTGAG 2 cut(s) 553, 719
BsaI GGTCTC 1 cut(s) 665
BsaJI CCNNGG 3 cut(s) 591, 597, 678
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 453
Bse21I CCTNAGG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 679
BseDI CCNNGG 3 cut(s) 591, 597, 678
BseGI GGATG 2 cut(s) 283, 588
BseLI CCNNNNNNNGG 2 cut(s) 251, 453
BseMII CTCAG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 662
BshFI GGCC 2 cut(s) 558, 596
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 251, 453
BsmAI GTCTC 1 cut(s) 665
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 2 cut(s) 558, 596
Bso31I GGTCTC 1 cut(s) 665
Bsp143I GATC 4 cut(s) 355, 437, 456, 615
Bsp19I CCATGG 1 cut(s) 591
BspANI GGCC 2 cut(s) 558, 596
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 3 cut(s) 137, 138, 458
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 3 cut(s) 432, 451, 464
BspTNI GGTCTC 1 cut(s) 665
BssECI CCNNGG 3 cut(s) 591, 597, 678
BssMI GATC 4 cut(s) 355, 437, 456, 615
BssT1I CCWWGG 2 cut(s) 591, 597
Bst2UI CCWGG 1 cut(s) 679
Bst4CI ACNGT 4 cut(s) 57, 212, 391, 473
Bst6I CTCTTC 1 cut(s) 233
BstC8I GCNNGC 3 cut(s) 419, 560, 713
BstDEI CTNAG 2 cut(s) 262, 288
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 283, 588
BstKTI GATC 4 cut(s) 358, 440, 459, 618
BstMAI GTCTC 1 cut(s) 665
BstMBI GATC 4 cut(s) 355, 437, 456, 615
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 679
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 677
BstV1I GCAGC 1 cut(s) 662
BstV2I GAAGAC 2 cut(s) 55, 213
BstX2I RGATCY 2 cut(s) 437, 456
BstXI CCANNNNNNTGG 1 cut(s) 598
BstYI RGATCY 2 cut(s) 437, 456
Bsu36I CCTNAGG 1 cut(s) 288
BsuI GTATCC 1 cut(s) 542
BsuRI GGCC 2 cut(s) 558, 596
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 2 cut(s) 283, 588
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 3 cut(s) 419, 560, 713
Cfr13I GGNCC 1 cut(s) 136
CseI GACGC 1 cut(s) 562
Csp6I GTAC 1 cut(s) 484
CviAII CATG 3 cut(s) 170, 418, 592
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 2 cut(s) 262, 288
DpnI GATC 4 cut(s) 357, 439, 458, 617
DpnII GATC 4 cut(s) 355, 437, 456, 615
EaeI YGGCCR 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco130I CCWWGG 2 cut(s) 591, 597
Eco31I GGTCTC 1 cut(s) 665
Eco32I GATATC 1 cut(s) 631
Eco47I GGWCC 1 cut(s) 136
Eco57I CTGAAG 4 cut(s) 48, 225, 449, 645
Eco81I CCTNAGG 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 677
EcoRV GATATC 1 cut(s) 631
EcoT14I CCWWGG 2 cut(s) 591, 597
ErhI CCWWGG 2 cut(s) 591, 597
FaeI CATG 3 cut(s) 173, 421, 595
FaqI GGGAC 1 cut(s) 122
FatI CATG 3 cut(s) 169, 417, 591
FauNDI CATATG 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 651
FokI GGATG 2 cut(s) 270, 595
Fsp4HI GCNGC 1 cut(s) 651
FspBI CTAG 4 cut(s) 8, 113, 132, 647
GluI GCNGC 1 cut(s) 651
HaeIII GGCC 2 cut(s) 558, 596
HgaI GACGC 1 cut(s) 562
Hin1II CATG 3 cut(s) 173, 421, 595
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 2 cut(s) 158, 674
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 2 cut(s) 281, 339
Hpy188I TCNGA 8 cut(s) 163, 186, 205, 276, 360, 429, 437, 625
Hpy188III TCNNGA 3 cut(s) 122, 290, 394
Hpy8I GTNNAC 2 cut(s) 281, 339
HpyAV CCTTC 1 cut(s) 652
HpyCH4III ACNGT 4 cut(s) 57, 212, 391, 473
HpyCH4V TGCA 3 cut(s) 20, 239, 417
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 2 cut(s) 262, 288
Hsp92II CATG 3 cut(s) 173, 421, 595
KflI GGGWCCC 1 cut(s) 136
Kzo9I GATC 4 cut(s) 355, 437, 456, 615
LpnPI CCDG 8 cut(s) 135, 275, 462, 549, 553, 572, 664, 691
Lsp1109I GCAGC 1 cut(s) 662
MaeI CTAG 4 cut(s) 8, 113, 132, 647
MalI GATC 4 cut(s) 357, 439, 458, 617
MboI GATC 4 cut(s) 355, 437, 456, 615
MboII GAAGA 9 cut(s) 41, 60, 74, 218, 220, 267, 483, 521, 638
MflI RGATCY 2 cut(s) 437, 456
MlsI TGGCCA 1 cut(s) 558
MluCI AATT 5 cut(s) 102, 173, 199, 510, 742
MluNI TGGCCA 1 cut(s) 558
MmeI TCCRAC 3 cut(s) 232, 245, 526
MnlI CCTC 4 cut(s) 228, 297, 381, 469
Mox20I TGGCCA 1 cut(s) 558
MroXI GAANNNNTTC 2 cut(s) 66, 102
MscI TGGCCA 1 cut(s) 558
Msp20I TGGCCA 1 cut(s) 558
MspR9I CCNGG 1 cut(s) 679
MvaI CCWGG 1 cut(s) 679
MwoI GCNNNNNNNGC 1 cut(s) 17
NcoI CCATGG 1 cut(s) 591
NdeI CATATG 1 cut(s) 247
NdeII GATC 4 cut(s) 355, 437, 456, 615
NlaIII CATG 3 cut(s) 173, 421, 595
NlaIV GGNNCC 3 cut(s) 137, 138, 458
NspI RCATGY 1 cut(s) 421
PaeI GCATGC 1 cut(s) 421
PdmI GAANNNNTTC 2 cut(s) 66, 102
PfeI GAWTC 2 cut(s) 158, 674
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 1 cut(s) 652
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 677
PspGI CCWGG 1 cut(s) 677
PspN4I GGNNCC 3 cut(s) 137, 138, 458
PspPI GGNCC 1 cut(s) 136
PspPPI RGGWCCY 1 cut(s) 136
PsuI RGATCY 2 cut(s) 437, 456
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
SatI GCNGC 1 cut(s) 651
Sau3AI GATC 4 cut(s) 355, 437, 456, 615
Sau96I GGNCC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 679
SetI ASST 8 cut(s) 13, 28, 303, 367, 480, 538, 644, 661
SinI GGWCC 1 cut(s) 136
SmlI CTYRAG 2 cut(s) 568, 698
SmoI CTYRAG 2 cut(s) 568, 698
SphI GCATGC 1 cut(s) 421
Sse9I AATT 5 cut(s) 102, 173, 199, 510, 742
SspMI CTAG 4 cut(s) 8, 113, 132, 647
StyD4I CCNGG 1 cut(s) 677
StyI CCWWGG 2 cut(s) 591, 597
TaaI ACNGT 4 cut(s) 57, 212, 391, 473
TaqI TCGA 1 cut(s) 672
TasI AATT 5 cut(s) 102, 173, 199, 510, 742
TatI WGTACW 1 cut(s) 483
TfiI GAWTC 2 cut(s) 158, 674
TseI GCWGC 1 cut(s) 650
TspDTI ATGAA 6 cut(s) 54, 59, 186, 220, 483, 599
Van91I CCANNNNNTGG 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 2 cut(s) 102, 173
XceI RCATGY 1 cut(s) 421
XmnI GAANNNNTTC 2 cut(s) 66, 102
XspI CTAG 4 cut(s) 8, 113, 132, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.