Rmu_sc0010462.1_g000006

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010462.1
OG0000419
Physical Location & Seq
Forward (+)
40818 .. 42086
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010462.1_g000006.1.cds

Sequence Viewer

Length: 1269 bp
atgtcgcaaccccagaagcagaagaactgggaagaacatgaaaccactaaggatcctaaagaaaaaatcctcaaaagattcttgctaagtccaaaaggactagccacaactgatcaatcccagggtaaaggattggttagcccgtttcaaacggcagacggtaaaggctcatcaagaccgttgacggctgttgctttgccaaaaagcaaaccaactccaactggagtaataaatgtttttaattatgaattaagaacctttgctaatcatgtgttcagaactggctggaggctagcttaccaccaaaagacaatcctggacaatctcttatttgcctttcaagaaagaaatagtggtattatgttcccagctttgtttgcattagctaaagaactccatgaaaatggtagaccacagcatgaagaagttcaaatacagaagagtgctattagaagtgaaaaagttcaccatcttcaaaatccaaaaagtgctagaattcctatcatagcactcagagaatcagattggtttgaattccataatctgattggaagccataattctgaaagctgtattcctccaaccctcttcattgttgcaggaccatatgttggacggtacggagttaatgttcagagtgagcatcctcaagaacacaagctttggcttgttgaaaatggttttgtccataatctatggaccaaaacgaatgatgatctcaaaggcctaccccctatcatcgtcaacacagtaaaaaatatcagaaaaaatgactatgctctcagactgaagttcagatctactccaccagaatggattcaaagaataaacggtgaagttgaatacatttctccttatcattatgtgagaattattcaaaaaagatatcttcagccagcctgtgttggatacaatggacagctaaattcaagtattccatggatgaaggccatgtctctcgaatacatcaagaagatcatccaagaagacacaagaaatactttcctggcagcaggagaaaaaacaattatcactacttatgatcaccctgaagcaatcagcagtgaccgcttcatatctctcacaagaaaagagatagaatcgacactggcatgcttacagtgggttgaaaagcttgaaaaagacaaccactacaagatgtatgtagatacagatgtcgaggaaaatacaactactgccagaatgaccaggatggatagcaactcctttttcctcggtcacaactcagaaacagacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

422

Amino Acids

48.64

Weight (kDa)

8.83

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 611
AccI GTMKAC 1 cut(s) 409
AciI CCGC 1 cut(s) 1069
AclWI GGATC 2 cut(s) 47, 60
AcsI RAATTY 3 cut(s) 495, 533, 925
AcuI CTGAAG 3 cut(s) 809, 875, 1071
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 1 cut(s) 611
AflIII ACRYGT 1 cut(s) 1263
AjnI CCWGG 4 cut(s) 120, 315, 1005, 1208
AloI GAACNNNNNNTCC 2 cut(s) 615, 647
AluBI AGCT 7 cut(s) 296, 371, 386, 570, 661, 922, 1135
AluI AGCT 7 cut(s) 296, 371, 386, 570, 661, 922, 1135
Alw26I GTCTC 1 cut(s) 960
AlwI GGATC 2 cut(s) 47, 60
AoxI GGCC 2 cut(s) 724, 948
ApeKI GCWGC 1 cut(s) 1010
ApoI RAATTY 3 cut(s) 495, 533, 925
Asp700I GAANNNNTTC 3 cut(s) 426, 462, 816
AspS9I GGNCC 2 cut(s) 602, 699
AsuHPI GGTGA 3 cut(s) 458, 845, 1037
AsuNHI GCTAGC 1 cut(s) 292
AvaII GGWCC 2 cut(s) 602, 699
BaeI ACNNNNGTAYC 2 cut(s) 1161, 1194
BamHI GGATCC 1 cut(s) 52
BarI GAAGNNNNNNTAC 2 cut(s) 417, 449
BbsI GAAGAC 1 cut(s) 993
BbvI GCAGC 1 cut(s) 1022
BccI CCATC 2 cut(s) 477, 1207
BceAI ACGGC 2 cut(s) 168, 201
BciT130I CCWGG 4 cut(s) 122, 317, 1007, 1210
BciVI GTATCC 1 cut(s) 902
BclI TGATCA 2 cut(s) 112, 1042
BcoDI GTCTC 1 cut(s) 960
BfaI CTAG 3 cut(s) 101, 293, 492
BfuI GTATCC 1 cut(s) 902
BglII AGATCT 1 cut(s) 797
BisI GCNGC 1 cut(s) 1011
BlsI GCNGC 1 cut(s) 1012
Bme1390I CCNGG 4 cut(s) 122, 317, 1007, 1210
Bme18I GGWCC 2 cut(s) 602, 699
BmgT120I GGNCC 2 cut(s) 602, 699
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 4 cut(s) 122, 317, 1007, 1210
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 1 cut(s) 652
BmtI GCTAGC 1 cut(s) 296
BmuI ACTGGG 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 993
BpmI CTGGAG 2 cut(s) 243, 307
BpuEI CTTGAG 1 cut(s) 633
BsaJI CCNNGG 4 cut(s) 120, 121, 938, 1234
BsaXI ACNNNNNCTCC 2 cut(s) 615, 645
Bsc4I CCNNNNNNNGG 1 cut(s) 611
Bse1I ACTGG 4 cut(s) 32, 226, 286, 1113
BseBI CCWGG 4 cut(s) 122, 317, 1007, 1210
BseDI CCNNGG 4 cut(s) 120, 121, 938, 1234
BseGI GGATG 4 cut(s) 643, 948, 978, 1218
BseLI CCNNNNNNNGG 1 cut(s) 611
BseMII CTCAG 3 cut(s) 526, 796, 1260
BseNI ACTGG 4 cut(s) 32, 226, 286, 1113
BseXI GCAGC 1 cut(s) 1022
BseYI CCCAGC 1 cut(s) 367
BshFI GGCC 2 cut(s) 726, 950
BslI CCNNNNNNNGG 1 cut(s) 611
BsmAI GTCTC 1 cut(s) 960
BsnI GGCC 2 cut(s) 726, 950
Bsp143I GATC 6 cut(s) 52, 112, 715, 797, 975, 1042
Bsp19I CCATGG 1 cut(s) 938
BspACI CCGC 1 cut(s) 1069
BspANI GGCC 2 cut(s) 726, 950
BspCNI CTCAG 3 cut(s) 525, 795, 1259
BspLI GGNNCC 1 cut(s) 54
BspOI GCTAGC 1 cut(s) 296
BspPI GGATC 2 cut(s) 47, 60
BsrI ACTGG 4 cut(s) 32, 226, 286, 1113
BssECI CCNNGG 4 cut(s) 120, 121, 938, 1234
BssMI GATC 6 cut(s) 52, 112, 715, 797, 975, 1042
BssT1I CCWWGG 1 cut(s) 938
Bst2UI CCWGG 4 cut(s) 122, 317, 1007, 1210
Bst4CI ACNGT 6 cut(s) 161, 180, 618, 751, 833, 1122
Bst6I CTCTTC 2 cut(s) 434, 593
BstC8I GCNNGC 3 cut(s) 294, 897, 1114
BstDEI CTNAG 5 cut(s) 48, 86, 512, 782, 1246
BstDSI CCRYGG 1 cut(s) 938
BstF5I GGATG 4 cut(s) 643, 948, 978, 1218
BstKTI GATC 6 cut(s) 55, 115, 718, 800, 978, 1045
BstMAI GTCTC 1 cut(s) 960
BstMBI GATC 6 cut(s) 52, 112, 715, 797, 975, 1042
BstMWI GCNNNNNNNGC 2 cut(s) 377, 1068
BstNI CCWGG 4 cut(s) 122, 317, 1007, 1210
BstNSI RCATGY 2 cut(s) 1116, 1267
BstSCI CCNGG 4 cut(s) 120, 315, 1005, 1208
BstV1I GCAGC 1 cut(s) 1022
BstV2I GAAGAC 1 cut(s) 993
BstX2I RGATCY 2 cut(s) 52, 797
BstXI CCANNNNNNTGG 2 cut(s) 404, 813
BstYI RGATCY 2 cut(s) 52, 797
BsuI GTATCC 1 cut(s) 902
BsuRI GGCC 2 cut(s) 726, 950
BtgI CCRYGG 1 cut(s) 938
BtsCI GGATG 4 cut(s) 643, 948, 978, 1218
BtsI GCAGTG 1 cut(s) 1069
BtsIMutI CAGTG 3 cut(s) 1069, 1106, 1127
Cac8I GCNNGC 3 cut(s) 294, 897, 1114
Cfr13I GGNCC 2 cut(s) 602, 699
Csp6I GTAC 1 cut(s) 619
CviAII CATG 8 cut(s) 38, 269, 398, 419, 939, 952, 1113, 1264
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 5 cut(s) 48, 86, 512, 782, 1246
DpnI GATC 6 cut(s) 54, 114, 717, 799, 977, 1044
DpnII GATC 6 cut(s) 52, 112, 715, 797, 975, 1042
Eam1104I CTCTTC 2 cut(s) 434, 593
EarI CTCTTC 2 cut(s) 434, 593
Eco130I CCWWGG 1 cut(s) 938
Eco147I AGGCCT 1 cut(s) 726
Eco32I GATATC 1 cut(s) 887
Eco47I GGWCC 2 cut(s) 602, 699
Eco57I CTGAAG 3 cut(s) 809, 875, 1071
EcoRI GAATTC 2 cut(s) 495, 533
EcoRII CCWGG 4 cut(s) 120, 315, 1005, 1208
EcoRV GATATC 1 cut(s) 887
EcoT14I CCWWGG 1 cut(s) 938
ErhI CCWWGG 1 cut(s) 938
FaeI CATG 8 cut(s) 41, 272, 401, 422, 942, 955, 1116, 1267
FalI AAGNNNNNCTT 2 cut(s) 985, 1017
FatI CATG 8 cut(s) 37, 268, 397, 418, 938, 951, 1112, 1263
FauNDI CATATG 1 cut(s) 607
FbaI TGATCA 2 cut(s) 112, 1042
FblI GTMKAC 1 cut(s) 409
Fnu4HI GCNGC 1 cut(s) 1011
FokI GGATG 4 cut(s) 630, 955, 965, 1225
Fsp4HI GCNGC 1 cut(s) 1011
FspBI CTAG 3 cut(s) 101, 293, 492
GluI GCNGC 1 cut(s) 1011
GsaI CCCAGC 1 cut(s) 371
GsuI CTGGAG 2 cut(s) 243, 307
HaeIII GGCC 2 cut(s) 726, 950
Hin1II CATG 8 cut(s) 41, 272, 401, 422, 942, 955, 1116, 1267
HincII GTYRAC 2 cut(s) 183, 745
HindII GTYRAC 2 cut(s) 183, 745
HindIII AAGCTT 2 cut(s) 659, 1133
HinfI GANTC 4 cut(s) 78, 518, 817, 1100
HphI GGTGA 3 cut(s) 458, 845, 1037
Hpy166II GTNNAC 4 cut(s) 183, 410, 466, 745
Hpy188III TCNNGA 5 cut(s) 174, 341, 650, 959, 970
Hpy8I GTNNAC 4 cut(s) 183, 410, 466, 745
HpyAV CCTTC 1 cut(s) 940
HpyCH4III ACNGT 6 cut(s) 161, 180, 618, 751, 833, 1122
HpyCH4V TGCA 2 cut(s) 380, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 1068
HpyF3I CTNAG 5 cut(s) 48, 86, 512, 782, 1246
Hsp92II CATG 8 cut(s) 41, 272, 401, 422, 942, 955, 1116, 1267
Ksp22I TGATCA 2 cut(s) 112, 1042
Kzo9I GATC 6 cut(s) 52, 112, 715, 797, 975, 1042
Lsp1109I GCAGC 1 cut(s) 1022
LweI GCATC 1 cut(s) 652
MaeI CTAG 3 cut(s) 101, 293, 492
MaeIII GTNAC 2 cut(s) 1064, 1238
MalI GATC 6 cut(s) 54, 114, 717, 799, 977, 1044
MboI GATC 6 cut(s) 52, 112, 715, 797, 975, 1042
MboII GAAGA 9 cut(s) 34, 44, 434, 451, 464, 580, 881, 985, 998
MflI RGATCY 2 cut(s) 52, 797
MluCI AATT 8 cut(s) 241, 248, 495, 533, 559, 870, 925, 1026
MmeI TCCRAC 4 cut(s) 242, 592, 605, 886
MnlI CCTC 7 cut(s) 80, 282, 588, 596, 657, 1174, 1244
MroXI GAANNNNTTC 3 cut(s) 426, 462, 816
MseI TTAA 3 cut(s) 240, 251, 627
MslI CAYNNNNRTG 3 cut(s) 402, 811, 1111
MspR9I CCNGG 4 cut(s) 122, 317, 1007, 1210
MvaI CCWGG 4 cut(s) 122, 317, 1007, 1210
MwoI GCNNNNNNNGC 2 cut(s) 377, 1068
NcoI CCATGG 1 cut(s) 938
NdeI CATATG 1 cut(s) 607
NdeII GATC 6 cut(s) 52, 112, 715, 797, 975, 1042
NheI GCTAGC 1 cut(s) 292
NlaIII CATG 8 cut(s) 41, 272, 401, 422, 942, 955, 1116, 1267
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 2 cut(s) 1064, 1238
NspI RCATGY 2 cut(s) 1116, 1267
PaeI GCATGC 1 cut(s) 1116
PasI CCCWGGG 1 cut(s) 121
PceI AGGCCT 1 cut(s) 726
PciI ACATGT 1 cut(s) 1263
PdmI GAANNNNTTC 3 cut(s) 426, 462, 816
PfeI GAWTC 4 cut(s) 78, 518, 817, 1100
PflMI CCANNNNNTGG 1 cut(s) 611
PfoI TCCNGGA 1 cut(s) 315
PkrI GCNGC 1 cut(s) 1012
PscI ACATGT 1 cut(s) 1263
Psp6I CCWGG 4 cut(s) 120, 315, 1005, 1208
PspFI CCCAGC 1 cut(s) 367
PspGI CCWGG 4 cut(s) 120, 315, 1005, 1208
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 2 cut(s) 602, 699
PsuI RGATCY 2 cut(s) 52, 797
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
RseI CAYNNNNRTG 3 cut(s) 402, 811, 1111
SaqAI TTAA 3 cut(s) 240, 251, 627
SatI GCNGC 1 cut(s) 1011
Sau3AI GATC 6 cut(s) 52, 112, 715, 797, 975, 1042
Sau96I GGNCC 2 cut(s) 602, 699
ScrFI CCNGG 4 cut(s) 122, 317, 1007, 1210
SetI ASST 8 cut(s) 260, 298, 373, 388, 572, 663, 924, 1137
SfaNI GCATC 1 cut(s) 652
SinI GGWCC 2 cut(s) 602, 699
SmiMI CAYNNNNRTG 3 cut(s) 402, 811, 1111
SmlI CTYRAG 1 cut(s) 648
SmoI CTYRAG 1 cut(s) 648
SphI GCATGC 1 cut(s) 1116
Sse9I AATT 8 cut(s) 241, 248, 495, 533, 559, 870, 925, 1026
SseBI AGGCCT 1 cut(s) 726
SsiI CCGC 1 cut(s) 1069
SspMI CTAG 3 cut(s) 101, 293, 492
StuI AGGCCT 1 cut(s) 726
StyD4I CCNGG 4 cut(s) 120, 315, 1005, 1208
StyI CCWWGG 1 cut(s) 938
TaaI ACNGT 6 cut(s) 161, 180, 618, 751, 833, 1122
TaqI TCGA 3 cut(s) 960, 1103, 1179
TaqII GACCGA 1 cut(s) 1226
TasI AATT 8 cut(s) 241, 248, 495, 533, 559, 870, 925, 1026
TfiI GAWTC 4 cut(s) 78, 518, 817, 1100
Tru1I TTAA 3 cut(s) 240, 251, 627
Tru9I TTAA 3 cut(s) 240, 251, 627
TscAI CASTG 3 cut(s) 1069, 1113, 1127
TseFI GTSAC 2 cut(s) 1064, 1238
TseI GCWGC 1 cut(s) 1010
Tsp45I GTSAC 2 cut(s) 1064, 1238
TspDTI ATGAA 7 cut(s) 54, 261, 414, 435, 580, 959, 1063
TspGWI ACGGA 1 cut(s) 636
TspRI CASTG 3 cut(s) 1069, 1113, 1127
Van91I CCANNNNNTGG 1 cut(s) 611
VpaK11BI GGWCC 2 cut(s) 602, 699
XapI RAATTY 3 cut(s) 495, 533, 925
XceI RCATGY 2 cut(s) 1116, 1267
XcmI CCANNNNNNNNNTGG 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 409
XmnI GAANNNNTTC 3 cut(s) 426, 462, 816
XspI CTAG 3 cut(s) 101, 293, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.