RLG00000006790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000419
Physical Location & Seq
Forward (+)
10555825 .. 10563209
7385 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006790

Sequence Viewer

Length: 567 bp
ATGGTGGCTGTTAGTGAAAGGAGGGTTTGGGATCCAGGGCTCCTGCCGACGTCATGGTGGTCTAGTCTGGGCCCTACGCTGAGCGGTGGTTTGGACGTTGTACCAACAACGTCTCCGGATCTGCTGCGATCTGGTTGTGTTCTGTTGGAACCCTTCTTCCACAGTTGGCAGCAAGTGTGGCGGTGTTCTCTATTTGATCTGCGAATTTGGACGGACTGGTGGATTCGCTCCTATGCGATGGCGATGGAGAGAACTCGTGGGGAGGATGATGCTCCTCCTGAGGCTATTTCACATGAGACCAAGCAGCTGCCCCATGAAATGAAAACTGTGCCGGCGATGATGGGAACACCCGATCCGACTCCGATTCCCTTGCACAGCGAACCTGCAGATGACTCGACCCAGGAAGGGATCGATCTGTCGGGATCTGAAATCAATTCCAAATACGAAAGCTTCTTCCTGCCCAGGAAGACGCGGTCCTCCAAACCAGAAATCCCGACAGCGAACGTCGTTAGGCACGGCGGAAAACCAACTGAGATGGTGGCTCCGCTGCTAGACTCGAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.08

Weight (kDa)

5.21

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 53
Acc36I ACCTGC 1 cut(s) 391
AccBSI CCGCTC 1 cut(s) 84
AccII CGCG 1 cut(s) 472
AccIII TCCGGA 1 cut(s) 115
AciI CCGC 5 cut(s) 84, 181, 472, 519, 545
AclWI GGATC 6 cut(s) 26, 39, 126, 347, 416, 430
AcsI RAATTY 1 cut(s) 204
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 405
AjnI CCWGG 3 cut(s) 34, 399, 461
AloI GAACNNNNNNTCC 4 cut(s) 141, 173, 337, 369
AluBI AGCT 2 cut(s) 307, 450
AluI AGCT 2 cut(s) 307, 450
Alw26I GTCTC 2 cut(s) 117, 290
AlwI GGATC 6 cut(s) 26, 39, 126, 347, 416, 430
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 1 cut(s) 70
ApaI GGGCCC 1 cut(s) 74
ApeKI GCWGC 5 cut(s) 124, 169, 304, 307, 547
ApoI RAATTY 1 cut(s) 204
AspS9I GGNCC 3 cut(s) 70, 71, 474
AvaII GGWCC 1 cut(s) 474
AxyI CCTNAGG 1 cut(s) 279
BaeGI GKGCMC 1 cut(s) 74
BamHI GGATCC 1 cut(s) 31
BanII GRGCYC 2 cut(s) 42, 74
BauI CACGAG 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 473
BbvI GCAGC 5 cut(s) 111, 181, 294, 316, 534
BccI CCATC 4 cut(s) 232, 238, 334, 529
BceAI ACGGC 1 cut(s) 532
BcgI CGANNNNNNTGC 4 cut(s) 352, 375, 386, 409
BciT130I CCWGG 3 cut(s) 36, 401, 463
BcoDI GTCTC 2 cut(s) 117, 290
BfaI CTAG 2 cut(s) 63, 551
BfmI CTRYAG 1 cut(s) 384
BfuAI ACCTGC 1 cut(s) 391
BisI GCNGC 5 cut(s) 125, 170, 305, 308, 548
BlpI GCTNAGC 1 cut(s) 80
BlsI GCNGC 5 cut(s) 126, 171, 306, 309, 549
Bme1390I CCNGG 3 cut(s) 36, 401, 463
Bme18I GGWCC 1 cut(s) 474
BmgT120I GGNCC 3 cut(s) 70, 71, 474
BmiI GGNNCC 5 cut(s) 33, 41, 72, 150, 543
BmrFI CCNGG 3 cut(s) 36, 401, 463
BmsI GCATC 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 473
Bpu1102I GCTNAGC 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 3 cut(s) 35, 399, 461
BsaWI WCCGGW 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 221
Bse21I CCTNAGG 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 115
BseBI CCWGG 3 cut(s) 36, 401, 463
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 3 cut(s) 35, 399, 461
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMII CTCAG 3 cut(s) 71, 270, 522
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 264
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 5 cut(s) 111, 181, 294, 316, 534
Bsh1236I CGCG 1 cut(s) 472
BshFI GGCC 1 cut(s) 72
BshVI ATCGAT 1 cut(s) 411
BsiSI CCGG 2 cut(s) 116, 332
BslI CCNNNNNNNGG 1 cut(s) 405
BsmAI GTCTC 2 cut(s) 117, 290
BsmBI CGTCTC 1 cut(s) 117
BsnI GGCC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 290
Bsp120I GGGCCC 1 cut(s) 70
Bsp1286I GDGCHC 2 cut(s) 42, 74
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 8 cut(s) 31, 118, 128, 196, 352, 408, 412, 422
Bsp1720I GCTNAGC 1 cut(s) 80
BspACI CCGC 5 cut(s) 84, 181, 472, 519, 545
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 3 cut(s) 72, 271, 523
BspDI ATCGAT 1 cut(s) 411
BspEI TCCGGA 1 cut(s) 115
BspFNI CGCG 1 cut(s) 472
BspLI GGNNCC 5 cut(s) 33, 41, 72, 150, 543
BspMAI CTGCAG 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 391
BspPI GGATC 6 cut(s) 26, 39, 126, 347, 416, 430
BspTNI GGTCTC 1 cut(s) 290
BsrBI CCGCTC 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 331
BsrI ACTGG 1 cut(s) 221
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 3 cut(s) 35, 399, 461
BssMI GATC 8 cut(s) 31, 118, 128, 196, 352, 408, 412, 422
BssNI GRCGYC 1 cut(s) 50
BssSI CACGAG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 255
Bst2UI CCWGG 3 cut(s) 36, 401, 463
Bst4CI ACNGT 2 cut(s) 164, 328
BstACI GRCGYC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 80, 279, 531
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 472
BstKTI GATC 8 cut(s) 34, 121, 131, 199, 355, 411, 415, 425
BstMAI GTCTC 2 cut(s) 117, 290
BstMBI GATC 8 cut(s) 31, 118, 128, 196, 352, 408, 412, 422
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 3 cut(s) 36, 401, 463
BstSCI CCNGG 3 cut(s) 34, 399, 461
BstSFI CTRYAG 1 cut(s) 384
BstSLI GKGCMC 1 cut(s) 74
BstUI CGCG 1 cut(s) 472
BstV1I GCAGC 5 cut(s) 111, 181, 294, 316, 534
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 3 cut(s) 31, 118, 422
BstYI RGATCY 3 cut(s) 31, 118, 422
Bsu15I ATCGAT 1 cut(s) 411
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 1 cut(s) 72
BsuTUI ATCGAT 1 cut(s) 411
BtgZI GCGATG 3 cut(s) 251, 257, 350
BtsCI GGATG 1 cut(s) 271
BveI ACCTGC 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 3 cut(s) 70, 71, 474
ClaI ATCGAT 1 cut(s) 411
CseI GACGC 1 cut(s) 478
Csp6I GTAC 1 cut(s) 101
CviAII CATG 3 cut(s) 54, 293, 314
CviJI RGCY 7 cut(s) 8, 40, 72, 284, 307, 450, 542
CviKI_1 RGCY 7 cut(s) 8, 40, 72, 284, 307, 450, 542
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 3 cut(s) 80, 279, 531
DpnI GATC 8 cut(s) 33, 120, 130, 198, 354, 410, 414, 424
DpnII GATC 8 cut(s) 31, 118, 128, 196, 352, 408, 412, 422
EciI GGCGGA 1 cut(s) 534
Eco24I GRGCYC 2 cut(s) 42, 74
Eco31I GGTCTC 1 cut(s) 290
Eco47I GGWCC 1 cut(s) 474
Eco81I CCTNAGG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 71
EcoRII CCWGG 3 cut(s) 34, 399, 461
EcoT38I GRGCYC 2 cut(s) 42, 74
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 3 cut(s) 57, 296, 317
FaiI YATR 4 cut(s) 55, 234, 294, 315
FatI CATG 3 cut(s) 53, 292, 313
Fnu4HI GCNGC 5 cut(s) 125, 170, 305, 308, 548
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 2 cut(s) 42, 74
Fsp4HI GCNGC 5 cut(s) 125, 170, 305, 308, 548
FspBI CTAG 2 cut(s) 63, 551
GluI GCNGC 5 cut(s) 125, 170, 305, 308, 548
HaeIII GGCC 1 cut(s) 72
HapII CCGG 2 cut(s) 116, 332
HgaI GACGC 1 cut(s) 478
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 3 cut(s) 57, 296, 317
HindIII AAGCTT 1 cut(s) 448
HinfI GANTC 5 cut(s) 223, 358, 364, 392, 554
HpaII CCGG 2 cut(s) 116, 332
Hpy188I TCNGA 3 cut(s) 357, 363, 427
Hpy188III TCNNGA 4 cut(s) 116, 278, 420, 493
Hpy99I CGWCG 2 cut(s) 52, 509
HpyAV CCTTC 2 cut(s) 163, 398
HpyCH4III ACNGT 2 cut(s) 164, 328
HpyCH4IV ACGT 4 cut(s) 50, 96, 110, 504
HpyCH4V TGCA 2 cut(s) 373, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 3 cut(s) 80, 279, 531
HpySE526I ACGT 4 cut(s) 50, 96, 110, 504
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 3 cut(s) 57, 296, 317
Kpn2I TCCGGA 1 cut(s) 115
KroI GCCGGC 1 cut(s) 331
KroNI GCCGGC 1 cut(s) 333
Kzo9I GATC 8 cut(s) 31, 118, 128, 196, 352, 408, 412, 422
LmnI GCTCC 4 cut(s) 45, 233, 277, 547
Lsp1109I GCAGC 5 cut(s) 111, 181, 294, 316, 534
LweI GCATC 1 cut(s) 259
MaeI CTAG 2 cut(s) 63, 551
MaeII ACGT 4 cut(s) 50, 96, 110, 504
MalI GATC 8 cut(s) 33, 120, 130, 198, 354, 410, 414, 424
MbiI CCGCTC 1 cut(s) 84
MboI GATC 8 cut(s) 31, 118, 128, 196, 352, 408, 412, 422
MboII GAAGA 3 cut(s) 148, 445, 478
MflI RGATCY 3 cut(s) 31, 118, 422
MhlI GDGCHC 2 cut(s) 42, 74
MluCI AATT 2 cut(s) 204, 433
MlyI GAGTC 3 cut(s) 352, 386, 548
MmeI TCCRAC 2 cut(s) 126, 380
MnlI CCTC 5 cut(s) 15, 256, 274, 285, 487
MroI TCCGGA 1 cut(s) 115
MroNI GCCGGC 1 cut(s) 331
MspA1I CMGCKG 2 cut(s) 307, 547
MspI CCGG 2 cut(s) 116, 332
MspR9I CCNGG 3 cut(s) 36, 401, 463
MvaI CCWGG 3 cut(s) 36, 401, 463
MvnI CGCG 1 cut(s) 472
MwoI GCNNNNNNNGC 1 cut(s) 178
NaeI GCCGGC 1 cut(s) 333
NdeII GATC 8 cut(s) 31, 118, 128, 196, 352, 408, 412, 422
NgoMIV GCCGGC 1 cut(s) 331
NlaIII CATG 3 cut(s) 57, 296, 317
NlaIV GGNNCC 5 cut(s) 33, 41, 72, 150, 543
PdiI GCCGGC 1 cut(s) 333
PfeI GAWTC 2 cut(s) 223, 364
PflFI GACNNNGTC 1 cut(s) 472
PkrI GCNGC 5 cut(s) 126, 171, 306, 309, 549
PleI GAGTC 3 cut(s) 352, 386, 548
PpsI GAGTC 3 cut(s) 352, 386, 548
Psp6I CCWGG 3 cut(s) 34, 399, 461
PspGI CCWGG 3 cut(s) 34, 399, 461
PspN4I GGNNCC 5 cut(s) 33, 41, 72, 150, 543
PspOMI GGGCCC 1 cut(s) 70
PspPI GGNCC 3 cut(s) 70, 71, 474
PstI CTGCAG 1 cut(s) 388
PsuI RGATCY 3 cut(s) 31, 118, 422
PsyI GACNNNGTC 1 cut(s) 472
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SatI GCNGC 5 cut(s) 125, 170, 305, 308, 548
Sau3AI GATC 8 cut(s) 31, 118, 128, 196, 352, 408, 412, 422
Sau96I GGNCC 3 cut(s) 70, 71, 474
SchI GAGTC 3 cut(s) 352, 386, 548
ScrFI CCNGG 3 cut(s) 36, 401, 463
SduI GDGCHC 2 cut(s) 42, 74
SetI ASST 7 cut(s) 53, 99, 113, 309, 385, 452, 507
SfaNI GCATC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 384
SinI GGWCC 1 cut(s) 474
Sse9I AATT 2 cut(s) 204, 433
SsiI CCGC 5 cut(s) 84, 181, 472, 519, 545
SspMI CTAG 2 cut(s) 63, 551
StyD4I CCNGG 3 cut(s) 34, 399, 461
TaaI ACNGT 2 cut(s) 164, 328
TaiI ACGT 4 cut(s) 53, 99, 113, 507
TaqI TCGA 3 cut(s) 395, 411, 557
TasI AATT 2 cut(s) 204, 433
TfiI GAWTC 2 cut(s) 223, 364
TseI GCWGC 5 cut(s) 124, 169, 304, 307, 547
TspDTI ATGAA 2 cut(s) 330, 335
TspGWI ACGGA 1 cut(s) 227
Tth111I GACNNNGTC 1 cut(s) 472
VpaK11BI GGWCC 1 cut(s) 474
XapI RAATTY 1 cut(s) 204
XspI CTAG 2 cut(s) 63, 551
ZraI GACGTC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.