Rmu_sc0000528.1_g000019

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000528.1
OG0000419
Physical Location & Seq
Forward (+)
87839 .. 88705
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000528.1_g000019.1.cds

Sequence Viewer

Length: 867 bp
atgctataccaccgtttgaagaagttcatacacagcagagtgttgtccagaaagaaaaaaattcactacctagaagatccagaaagtgaaaaagttcctatcatagcactaaaagaatcagattggttcgagtttcatgatctaatagggaagcataatgctgaagcatgtatccctccaactctgttcataatcgcaggaccttatgttggaaaatacttagctaatgttcagagtgaacatcctcttgaacacaagctctggcttgttgaaaatggttttgtccataatctatggaccaaaacaaatgatgatctcaagggcctgccacccatcattgtcaatacagttaaaaatgttagaaaaaatgactgcatgctgaggctaaagttccgatccacccctccaaaatggattcaaaagggaaatggggaagttgaatatatttctccatatcattatgtgaggatcattcaaagaagatatctgcagcctgcctgtggtggatacaatggccagccaaattcaagcattccatggatgaaggccttgtccctagaatacattaagaagatcatcaaagaagatacaaacaatacattcctggcagcaggagaaaaaacaataatcactgcttacgatcatcctgacgtaatcaacagcgatctcttcatctctctcataagaaaggaaatagactcgacattgacatgtttacagtgggttgaaaagcttgaaagcaacaaccactacaaaatgtatattgatacagatgttgaaaataatgcaacaactgccagaatgtctaggatggatgacaactcctttgtccttggccacaactcagaaatggacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

288

Amino Acids

33.5

Weight (kDa)

7.71

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 71, 390, 476
AcoI YGGCCR 2 cut(s) 514, 835
AcsI RAATTY 2 cut(s) 60, 523
AcuI CTGAAG 1 cut(s) 183
AfiI CCNNNNNNNGG 2 cut(s) 209, 500
AflIII ACRYGT 2 cut(s) 710, 861
AjnI CCWGG 1 cut(s) 603
AluBI AGCT 3 cut(s) 224, 259, 733
AluI AGCT 3 cut(s) 224, 259, 733
AlwI GGATC 3 cut(s) 71, 390, 476
AoxI GGCC 4 cut(s) 322, 514, 546, 835
ApeKI GCWGC 2 cut(s) 490, 608
ApoI RAATTY 2 cut(s) 60, 523
ArsI GACNNNNNNTTYG 2 cut(s) 809, 841
Asp700I GAANNNNTTC 2 cut(s) 23, 93
AspS9I GGNCC 3 cut(s) 200, 297, 322
AvaII GGWCC 2 cut(s) 200, 297
BaeI ACNNNNGTAYC 2 cut(s) 759, 792
BalI TGGCCA 2 cut(s) 516, 837
BbvCI CCTCAGC 1 cut(s) 380
BbvI GCAGC 2 cut(s) 502, 620
BccI CCATC 2 cut(s) 341, 805
BciT130I CCWGG 1 cut(s) 605
BciVI GTATCC 2 cut(s) 182, 500
BfaI CTAG 3 cut(s) 71, 557, 807
BfmI CTRYAG 1 cut(s) 488
BfuI GTATCC 2 cut(s) 182, 500
BisI GCNGC 2 cut(s) 491, 609
BlsI GCNGC 2 cut(s) 492, 610
Bme1390I CCNGG 1 cut(s) 605
Bme18I GGWCC 2 cut(s) 200, 297
BmgT120I GGNCC 3 cut(s) 200, 297, 322
BmrFI CCNGG 1 cut(s) 605
Bpu10I CCTNAGC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 302
BsaJI CCNNGG 2 cut(s) 536, 832
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 500
BseBI CCWGG 1 cut(s) 605
BseDI CCNNGG 2 cut(s) 536, 832
BseGI GGATG 5 cut(s) 241, 546, 643, 816, 820
BseLI CCNNNNNNNGG 2 cut(s) 209, 500
BseMII CTCAG 2 cut(s) 371, 858
BseXI GCAGC 2 cut(s) 502, 620
BshFI GGCC 4 cut(s) 324, 516, 548, 837
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 2 cut(s) 209, 500
BsmFI GGGAC 1 cut(s) 538
BsmI GAATGC 1 cut(s) 531
BsnI GGCC 4 cut(s) 324, 516, 548, 837
Bsp143I GATC 8 cut(s) 76, 139, 313, 395, 468, 573, 640, 664
Bsp19I CCATGG 1 cut(s) 536
BspANI GGCC 4 cut(s) 324, 516, 548, 837
BspCNI CTCAG 2 cut(s) 372, 857
BspHI TCATGA 1 cut(s) 136
BspMAI CTGCAG 1 cut(s) 492
BspPI GGATC 3 cut(s) 71, 390, 476
BssECI CCNNGG 2 cut(s) 536, 832
BssMI GATC 8 cut(s) 76, 139, 313, 395, 468, 573, 640, 664
BssT1I CCWWGG 2 cut(s) 536, 832
Bst2UI CCWGG 1 cut(s) 605
Bst4CI ACNGT 3 cut(s) 14, 349, 720
Bst6I CTCTTC 1 cut(s) 674
BstAPI GCANNNNNTGC 1 cut(s) 794
BstC8I GCNNGC 4 cut(s) 326, 377, 495, 518
BstDEI CTNAG 3 cut(s) 220, 380, 844
BstDSI CCRYGG 1 cut(s) 536
BstF5I GGATG 5 cut(s) 241, 546, 643, 816, 820
BstKTI GATC 8 cut(s) 79, 142, 316, 398, 471, 576, 643, 667
BstMBI GATC 8 cut(s) 76, 139, 313, 395, 468, 573, 640, 664
BstMWI GCNNNNNNNGC 1 cut(s) 794
BstNI CCWGG 1 cut(s) 605
BstNSI RCATGY 4 cut(s) 171, 379, 714, 865
BstSCI CCNGG 1 cut(s) 603
BstSFI CTRYAG 1 cut(s) 488
BstV1I GCAGC 2 cut(s) 502, 620
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuI GTATCC 2 cut(s) 182, 500
BsuRI GGCC 4 cut(s) 324, 516, 548, 837
BtgI CCRYGG 1 cut(s) 536
BtsCI GGATG 5 cut(s) 241, 546, 643, 816, 820
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 2 cut(s) 630, 725
Cac8I GCNNGC 4 cut(s) 326, 377, 495, 518
CciI TCATGA 1 cut(s) 136
Cfr13I GGNCC 3 cut(s) 200, 297, 322
CviAII CATG 6 cut(s) 137, 168, 376, 537, 711, 862
DdeI CTNAG 3 cut(s) 220, 380, 844
DpnI GATC 8 cut(s) 78, 141, 315, 397, 470, 575, 642, 666
DpnII GATC 8 cut(s) 76, 139, 313, 395, 468, 573, 640, 664
EaeI YGGCCR 2 cut(s) 514, 835
Eam1104I CTCTTC 1 cut(s) 674
EarI CTCTTC 1 cut(s) 674
Eco130I CCWWGG 2 cut(s) 536, 832
Eco147I AGGCCT 1 cut(s) 548
Eco32I GATATC 1 cut(s) 485
Eco47I GGWCC 2 cut(s) 200, 297
Eco57I CTGAAG 1 cut(s) 183
EcoO109I RGGNCCY 2 cut(s) 200, 322
EcoRII CCWGG 1 cut(s) 603
EcoRV GATATC 1 cut(s) 485
EcoT14I CCWWGG 2 cut(s) 536, 832
ErhI CCWWGG 2 cut(s) 536, 832
FaeI CATG 6 cut(s) 140, 171, 379, 540, 714, 865
FaqI GGGAC 1 cut(s) 538
FatI CATG 6 cut(s) 136, 167, 375, 536, 710, 861
Fnu4HI GCNGC 2 cut(s) 491, 609
FokI GGATG 5 cut(s) 228, 553, 630, 823, 827
Fsp4HI GCNGC 2 cut(s) 491, 609
FspBI CTAG 3 cut(s) 71, 557, 807
GluI GCNGC 2 cut(s) 491, 609
HaeIII GGCC 4 cut(s) 324, 516, 548, 837
Hin1II CATG 6 cut(s) 140, 171, 379, 540, 714, 865
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 3 cut(s) 116, 415, 698
Hpy166II GTNNAC 2 cut(s) 239, 716
Hpy188I TCNGA 4 cut(s) 121, 234, 395, 847
Hpy188III TCNNGA 5 cut(s) 48, 80, 137, 248, 647
Hpy8I GTNNAC 2 cut(s) 239, 716
HpyAV CCTTC 1 cut(s) 538
HpyCH4III ACNGT 3 cut(s) 14, 349, 720
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 3 cut(s) 375, 490, 788
HpyF10VI GCNNNNNNNGC 1 cut(s) 794
HpyF3I CTNAG 3 cut(s) 220, 380, 844
HpySE526I ACGT 1 cut(s) 651
Hsp92II CATG 6 cut(s) 140, 171, 379, 540, 714, 865
Kzo9I GATC 8 cut(s) 76, 139, 313, 395, 468, 573, 640, 664
Lsp1109I GCAGC 2 cut(s) 502, 620
MaeI CTAG 3 cut(s) 71, 557, 807
MaeII ACGT 1 cut(s) 651
MalI GATC 8 cut(s) 78, 141, 315, 397, 470, 575, 642, 666
MboI GATC 8 cut(s) 76, 139, 313, 395, 468, 573, 640, 664
MboII GAAGA 6 cut(s) 31, 86, 492, 583, 596, 661
MflI RGATCY 1 cut(s) 76
MlsI TGGCCA 2 cut(s) 516, 837
MluCI AATT 2 cut(s) 60, 523
MluNI TGGCCA 2 cut(s) 516, 837
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 2 cut(s) 190, 203
MnlI CCTC 5 cut(s) 186, 255, 375, 414, 459
Mox20I TGGCCA 2 cut(s) 516, 837
MroXI GAANNNNTTC 2 cut(s) 23, 93
MscI TGGCCA 2 cut(s) 516, 837
MseI TTAA 2 cut(s) 351, 567
MslI CAYNNNNRTG 1 cut(s) 709
Msp20I TGGCCA 2 cut(s) 516, 837
MspR9I CCNGG 1 cut(s) 605
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 1 cut(s) 605
MwoI GCNNNNNNNGC 1 cut(s) 794
NcoI CCATGG 1 cut(s) 536
NdeII GATC 8 cut(s) 76, 139, 313, 395, 468, 573, 640, 664
NlaIII CATG 6 cut(s) 140, 171, 379, 540, 714, 865
NspI RCATGY 4 cut(s) 171, 379, 714, 865
PaeI GCATGC 1 cut(s) 379
PagI TCATGA 1 cut(s) 136
PceI AGGCCT 1 cut(s) 548
PciI ACATGT 2 cut(s) 710, 861
PctI GAATGC 1 cut(s) 531
PdmI GAANNNNTTC 2 cut(s) 23, 93
PfeI GAWTC 2 cut(s) 116, 415
PkrI GCNGC 2 cut(s) 492, 610
PleI GAGTC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 692
PpuMI RGGWCCY 1 cut(s) 200
PscI ACATGT 2 cut(s) 710, 861
Psp5II RGGWCCY 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 603
PspGI CCWGG 1 cut(s) 603
PspPI GGNCC 3 cut(s) 200, 297, 322
PspPPI RGGWCCY 1 cut(s) 200
PstI CTGCAG 1 cut(s) 492
PsuI RGATCY 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 709
SaqAI TTAA 2 cut(s) 351, 567
SatI GCNGC 2 cut(s) 491, 609
Sau3AI GATC 8 cut(s) 76, 139, 313, 395, 468, 573, 640, 664
Sau96I GGNCC 3 cut(s) 200, 297, 322
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 1 cut(s) 605
SetI ASST 6 cut(s) 72, 205, 226, 261, 654, 735
SfcI CTRYAG 1 cut(s) 488
SinI GGWCC 2 cut(s) 200, 297
SmiMI CAYNNNNRTG 1 cut(s) 709
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
SphI GCATGC 1 cut(s) 379
Sse9I AATT 2 cut(s) 60, 523
SseBI AGGCCT 1 cut(s) 548
SspMI CTAG 3 cut(s) 71, 557, 807
StuI AGGCCT 1 cut(s) 548
StyD4I CCNGG 1 cut(s) 603
StyI CCWWGG 2 cut(s) 536, 832
TaaI ACNGT 3 cut(s) 14, 349, 720
TaiI ACGT 1 cut(s) 654
TaqI TCGA 2 cut(s) 129, 701
TasI AATT 2 cut(s) 60, 523
TfiI GAWTC 2 cut(s) 116, 415
Tru1I TTAA 2 cut(s) 351, 567
Tru9I TTAA 2 cut(s) 351, 567
TscAI CASTG 2 cut(s) 637, 725
TseI GCWGC 2 cut(s) 490, 608
TspDTI ATGAA 5 cut(s) 16, 125, 178, 557, 661
TspRI CASTG 2 cut(s) 637, 725
VpaK11BI GGWCC 2 cut(s) 200, 297
XapI RAATTY 2 cut(s) 60, 523
XceI RCATGY 4 cut(s) 171, 379, 714, 865
XmnI GAANNNNTTC 2 cut(s) 23, 93
XspI CTAG 3 cut(s) 71, 557, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.