Rmu_sc0000663.1_g000004

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000663.1
OG0000419
Physical Location & Seq
Reverse (-)
18691 .. 19776
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000663.1_g000004.1.cds

Sequence Viewer

Length: 1086 bp
atggctactgctttgccaaaaagcagaccaactccaactggagttataaatgtttttaattatgaattaagaacctttgactttcctgtgttcagaactggcaagagactagcttatcaccagaaggcaatcctggataatcttttatttgcctttcaagaaagaagcagtggtctgatgttcccagctctctttgcattagctgaagaactctacgaaaatggtagaccacagtttgaagaaattcatacacagcagagtgctgtcagaaaagagaaaattcacttccttgaaaatccagaaagtgctaggatccctatcatggtactcaatgaatcagactggcatgaattccatagtctgataggaagtcataattttgaagatcgagttcctccaaccctctttattattgcaggaccctatgttggaagatacttagtcaatgttcagagtgaacatcctcaagaacacaagctctggcttgttgaaaatggttttgtccataatttgtggactaaaacaaatgatgatcttaaaggtttgctgcctatcattgacaacacagtcaaaaacattagaaaaaatgactgtatgcttcgtctgaagttcatatccactcctccagaatggatccagaggacaaacggtgatgttgagtatatttctccatatcactatgtgaaaattattcagaggaaatatctgcagcctgcctgtgtaggttacaatggccaacctaactcaagcatcccatggatgaaagccatggctctggaatacatcaagaagatcatctctgaagatattaataataccttcctggcagcaagagaaaaaaccatcatcactgcttacgatcatcctgacgtagtcagtagtgacctgttcctatctcttaccagaaaagagatagattcgacattggcatgcttacagtgggtggaaagacttgaaactgacaaccactataaaatgtatgttgatacagatgtcgaagacaatgcaacaaatactcgtatggcccaggcagacaacaactcctttgtgattggctacaattctgaaacagacgaaaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

361

Amino Acids

41.82

Weight (kDa)

5.67

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 47
AasI GACNNNNNNGTC 1 cut(s) 566
AccI GTMKAC 1 cut(s) 226
AclWI GGATC 4 cut(s) 307, 320, 628, 641
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 3 cut(s) 243, 279, 350
AcuI CTGAAG 3 cut(s) 225, 626, 822
AdeI CACNNNGTG 1 cut(s) 682
AfaI GTAC 1 cut(s) 327
AfiI CCNNNNNNNGG 2 cut(s) 322, 428
AflIII ACRYGT 1 cut(s) 1080
AgsI TTSAA 6 cut(s) 158, 239, 293, 383, 491, 956
AjnI CCWGG 3 cut(s) 132, 822, 1026
AluBI AGCT 4 cut(s) 113, 188, 203, 478
AluI AGCT 4 cut(s) 113, 188, 203, 478
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 4 cut(s) 307, 320, 628, 641
AoxI GGCC 2 cut(s) 733, 1023
ApeKI GCWGC 3 cut(s) 547, 709, 827
ApoI RAATTY 3 cut(s) 243, 279, 350
AseI ATTAAT 1 cut(s) 810
Asp700I GAANNNNTTC 1 cut(s) 243
AspS9I GGNCC 2 cut(s) 419, 1024
AsuHPI GGTGA 2 cut(s) 110, 662
AvaII GGWCC 1 cut(s) 419
BaeI ACNNNNGTAYC 2 cut(s) 978, 1011
BalI TGGCCA 1 cut(s) 735
BamHI GGATCC 2 cut(s) 312, 633
BbsI GAAGAC 1 cut(s) 1005
BbvI GCAGC 3 cut(s) 534, 721, 839
BccI CCATC 1 cut(s) 851
BcgI CGANNNNNNTGC 2 cut(s) 986, 1020
BciT130I CCWGG 3 cut(s) 134, 824, 1028
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 2 cut(s) 110, 309
BfmI CTRYAG 1 cut(s) 707
BisI GCNGC 3 cut(s) 548, 710, 828
BlsI GCNGC 3 cut(s) 549, 711, 829
Bme1390I CCNGG 3 cut(s) 134, 824, 1028
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 2 cut(s) 419, 1024
BmiI GGNNCC 3 cut(s) 314, 421, 635
BmrFI CCNGG 3 cut(s) 134, 824, 1028
BmsI GCATC 1 cut(s) 759
BpiI GAAGAC 1 cut(s) 1005
BpmI CTGGAG 2 cut(s) 60, 609
BpuEI CTTGAG 2 cut(s) 450, 730
BsaBI GATNNNNATC 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 755, 768, 1026
BsaXI ACNNNNNCTCC 2 cut(s) 1025, 1055
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 428
Bse1I ACTGG 3 cut(s) 43, 103, 347
Bse8I GATNNNNATC 1 cut(s) 317
BseBI CCWGG 3 cut(s) 134, 824, 1028
BseDI CCNNGG 3 cut(s) 755, 768, 1026
BseGI GGATG 4 cut(s) 460, 750, 765, 862
BseJI GATNNNNATC 1 cut(s) 317
BseLI CCNNNNNNNGG 2 cut(s) 322, 428
BseNI ACTGG 3 cut(s) 43, 103, 347
BseRI GAGGAG 1 cut(s) 612
BseXI GCAGC 3 cut(s) 534, 721, 839
BseYI CCCAGC 1 cut(s) 184
BshFI GGCC 2 cut(s) 735, 1025
BslI CCNNNNNNNGG 2 cut(s) 322, 428
BsmAI GTCTC 1 cut(s) 100
BsnI GGCC 2 cut(s) 735, 1025
Bsp143I GATC 6 cut(s) 312, 385, 532, 633, 792, 859
Bsp19I CCATGG 2 cut(s) 755, 768
BspANI GGCC 2 cut(s) 735, 1025
BspLI GGNNCC 3 cut(s) 314, 421, 635
BspMAI CTGCAG 1 cut(s) 711
BspPI GGATC 4 cut(s) 307, 320, 628, 641
BsrI ACTGG 3 cut(s) 43, 103, 347
BssECI CCNNGG 3 cut(s) 755, 768, 1026
BssMI GATC 6 cut(s) 312, 385, 532, 633, 792, 859
BssT1I CCWWGG 2 cut(s) 755, 768
Bst2UI CCWGG 3 cut(s) 134, 824, 1028
Bst4CI ACNGT 5 cut(s) 234, 568, 593, 650, 939
BstC8I GCNNGC 2 cut(s) 714, 931
BstDEI CTNAG 1 cut(s) 439
BstDSI CCRYGG 2 cut(s) 755, 768
BstF5I GGATG 4 cut(s) 460, 750, 765, 862
BstKTI GATC 6 cut(s) 315, 388, 535, 636, 795, 862
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 6 cut(s) 312, 385, 532, 633, 792, 859
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 3 cut(s) 134, 824, 1028
BstNSI RCATGY 2 cut(s) 933, 1084
BstSCI CCNGG 3 cut(s) 132, 822, 1026
BstSFI CTRYAG 1 cut(s) 707
BstV1I GCAGC 3 cut(s) 534, 721, 839
BstV2I GAAGAC 1 cut(s) 1005
BstX2I RGATCY 2 cut(s) 312, 633
BstXI CCANNNNNNTGG 1 cut(s) 775
BstYI RGATCY 2 cut(s) 312, 633
BsuRI GGCC 2 cut(s) 735, 1025
BtgI CCRYGG 2 cut(s) 755, 768
BtsCI GGATG 4 cut(s) 460, 750, 765, 862
BtsI GCAGTG 2 cut(s) 175, 849
BtsIMutI CAGTG 3 cut(s) 175, 849, 944
Cac8I GCNNGC 2 cut(s) 714, 931
Cfr13I GGNCC 2 cut(s) 419, 1024
Csp6I GTAC 1 cut(s) 326
CviAII CATG 6 cut(s) 322, 347, 756, 769, 930, 1081
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 1 cut(s) 439
DpnI GATC 6 cut(s) 314, 387, 534, 635, 794, 861
DpnII GATC 6 cut(s) 312, 385, 532, 633, 792, 859
DraIII CACNNNGTG 1 cut(s) 682
DrdI GACNNNNNNGTC 1 cut(s) 566
DseDI GACNNNNNNGTC 1 cut(s) 566
EaeI YGGCCR 1 cut(s) 733
Eco130I CCWWGG 2 cut(s) 755, 768
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 3 cut(s) 225, 626, 822
EcoO109I RGGNCCY 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 3 cut(s) 132, 822, 1026
EcoT14I CCWWGG 2 cut(s) 755, 768
ErhI CCWWGG 2 cut(s) 755, 768
FaeI CATG 6 cut(s) 325, 350, 759, 772, 933, 1084
FatI CATG 6 cut(s) 321, 346, 755, 768, 929, 1080
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 3 cut(s) 548, 710, 828
FokI GGATG 4 cut(s) 447, 737, 772, 849
Fsp4HI GCNGC 3 cut(s) 548, 710, 828
FspBI CTAG 2 cut(s) 110, 309
GluI GCNGC 3 cut(s) 548, 710, 828
GsaI CCCAGC 1 cut(s) 188
GsuI CTGGAG 2 cut(s) 60, 609
HaeIII GGCC 2 cut(s) 735, 1025
Hin1II CATG 6 cut(s) 325, 350, 759, 772, 933, 1084
HinfI GANTC 2 cut(s) 335, 917
HphI GGTGA 2 cut(s) 110, 662
Hpy166II GTNNAC 3 cut(s) 227, 458, 516
Hpy188III TCNNGA 8 cut(s) 158, 299, 467, 626, 637, 776, 787, 866
Hpy8I GTNNAC 3 cut(s) 227, 458, 516
HpyAV CCTTC 2 cut(s) 118, 829
HpyCH4III ACNGT 5 cut(s) 234, 568, 593, 650, 939
HpyCH4IV ACGT 1 cut(s) 870
HpyCH4V TGCA 4 cut(s) 197, 416, 709, 1007
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 439
HpySE526I ACGT 1 cut(s) 870
Hsp92II CATG 6 cut(s) 325, 350, 759, 772, 933, 1084
Kzo9I GATC 6 cut(s) 312, 385, 532, 633, 792, 859
Lsp1109I GCAGC 3 cut(s) 534, 721, 839
LweI GCATC 1 cut(s) 759
MaeI CTAG 2 cut(s) 110, 309
MaeII ACGT 1 cut(s) 870
MaeIII GTNAC 2 cut(s) 725, 881
MalI GATC 6 cut(s) 314, 387, 534, 635, 794, 861
MboI GATC 6 cut(s) 312, 385, 532, 633, 792, 859
MboII GAAGA 7 cut(s) 218, 251, 395, 444, 802, 815, 1010
MflI RGATCY 2 cut(s) 312, 633
MlsI TGGCCA 1 cut(s) 735
MluCI AATT 9 cut(s) 58, 65, 243, 279, 350, 376, 508, 687, 1060
MluNI TGGCCA 1 cut(s) 735
MmeI TCCRAC 3 cut(s) 59, 409, 422
MnlI CCTC 6 cut(s) 405, 413, 474, 633, 633, 690
Mox20I TGGCCA 1 cut(s) 735
MroXI GAANNNNTTC 1 cut(s) 243
MscI TGGCCA 1 cut(s) 735
MseI TTAA 4 cut(s) 57, 68, 537, 810
MslI CAYNNNNRTG 1 cut(s) 928
Msp20I TGGCCA 1 cut(s) 735
MspR9I CCNGG 3 cut(s) 134, 824, 1028
MvaI CCWGG 3 cut(s) 134, 824, 1028
MwoI GCNNNNNNNGC 1 cut(s) 194
NcoI CCATGG 2 cut(s) 755, 768
NdeII GATC 6 cut(s) 312, 385, 532, 633, 792, 859
NlaIII CATG 6 cut(s) 325, 350, 759, 772, 933, 1084
NlaIV GGNNCC 3 cut(s) 314, 421, 635
NmuCI GTSAC 1 cut(s) 881
NspI RCATGY 2 cut(s) 933, 1084
PaeI GCATGC 1 cut(s) 933
PciI ACATGT 1 cut(s) 1080
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 2 cut(s) 335, 917
PflFI GACNNNGTC 1 cut(s) 872
PfoI TCCNGGA 1 cut(s) 132
PkrI GCNGC 3 cut(s) 549, 711, 829
PpuMI RGGWCCY 1 cut(s) 419
PscI ACATGT 1 cut(s) 1080
PshBI ATTAAT 1 cut(s) 810
PsiI TTATAA 1 cut(s) 47
Psp5II RGGWCCY 1 cut(s) 419
Psp6I CCWGG 3 cut(s) 132, 822, 1026
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 3 cut(s) 132, 822, 1026
PspN4I GGNNCC 3 cut(s) 314, 421, 635
PspPI GGNCC 2 cut(s) 419, 1024
PspPPI RGGWCCY 1 cut(s) 419
PstI CTGCAG 1 cut(s) 711
PsuI RGATCY 2 cut(s) 312, 633
PsyI GACNNNGTC 1 cut(s) 872
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
RseI CAYNNNNRTG 1 cut(s) 928
SaqAI TTAA 4 cut(s) 57, 68, 537, 810
SatI GCNGC 3 cut(s) 548, 710, 828
Sau3AI GATC 6 cut(s) 312, 385, 532, 633, 792, 859
Sau96I GGNCC 2 cut(s) 419, 1024
ScrFI CCNGG 3 cut(s) 134, 824, 1028
SfaNI GCATC 1 cut(s) 759
SfcI CTRYAG 1 cut(s) 707
SinI GGWCC 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 928
SmlI CTYRAG 2 cut(s) 465, 745
SmoI CTYRAG 2 cut(s) 465, 745
SphI GCATGC 1 cut(s) 933
Sse9I AATT 9 cut(s) 58, 65, 243, 279, 350, 376, 508, 687, 1060
SspMI CTAG 2 cut(s) 110, 309
StyD4I CCNGG 3 cut(s) 132, 822, 1026
StyI CCWWGG 2 cut(s) 755, 768
TaaI ACNGT 5 cut(s) 234, 568, 593, 650, 939
TaiI ACGT 1 cut(s) 873
TaqI TCGA 3 cut(s) 388, 920, 996
TasI AATT 9 cut(s) 58, 65, 243, 279, 350, 376, 508, 687, 1060
TfiI GAWTC 2 cut(s) 335, 917
Tru1I TTAA 4 cut(s) 57, 68, 537, 810
Tru9I TTAA 4 cut(s) 57, 68, 537, 810
TscAI CASTG 3 cut(s) 175, 856, 944
TseFI GTSAC 1 cut(s) 881
TseI GCWGC 3 cut(s) 547, 709, 827
Tsp45I GTSAC 1 cut(s) 881
TspDTI ATGAA 6 cut(s) 78, 236, 348, 363, 601, 776
TspRI CASTG 3 cut(s) 175, 856, 944
Tth111I GACNNNGTC 1 cut(s) 872
VpaK11BI GGWCC 1 cut(s) 419
VspI ATTAAT 1 cut(s) 810
XapI RAATTY 3 cut(s) 243, 279, 350
XceI RCATGY 2 cut(s) 933, 1084
XmiI GTMKAC 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 2 cut(s) 110, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.