Rmu_sc0001214.1_g000001

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001214.1
OG0000419
Physical Location & Seq
Reverse (-)
8695 .. 9743
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001214.1_g000001.1.cds

Sequence Viewer

Length: 642 bp
atgctaagactcaagttcagatacacccctctagaatggattcaaaagggaaatggggaagtagaatatatttctccatatcattatgtaaggatcattcaaagaaaatatctgcagcctgcctatgttggatacaatggccagccaaattcaagcattccatggatgaaggtcatgtctctagaatatattaaaaagatcatcgaagaagatacaagaaataccttcctggcagcaggagaaaaaacaataatcactgcttacgatcatcctgacgtaatcagaagcgacctcttcctctctctcacgagaaaggagataaactcgacacagacatgcctacaatgggttgaaaagcttgaaagcaacaaccactacaagatgtatgttgatacagatgtcgaagataatgcaataccaggatccgggagatcggaccctgcttttttggcgagctccggccgtctcaggagacaaaactttccagatcagttcgtctcctccgtctggttgtctctgtggcatcctctagtggctatatccaccgtatgcggtgcaacatggcagcgcagtttggtgttttctgacccggtcggaaaacgtagctccggcgacgttgtgacttcatggttccagtggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

213

Amino Acids

24.67

Weight (kDa)

8.45

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 552
AclWI GGATC 3 cut(s) 101, 417, 430
AcoI YGGCCR 2 cut(s) 139, 460
AcsI RAATTY 1 cut(s) 148
AfiI CCNNNNNNNGG 3 cut(s) 346, 425, 507
AgsI TTSAA 5 cut(s) 44, 101, 153, 353, 362
AjnI CCWGG 2 cut(s) 228, 418
AluBI AGCT 3 cut(s) 358, 456, 606
AluI AGCT 3 cut(s) 358, 456, 606
Alw21I GWGCWC 1 cut(s) 458
Alw26I GTCTC 5 cut(s) 183, 466, 470, 502, 519
AlwI GGATC 3 cut(s) 101, 417, 430
AoxI GGCC 2 cut(s) 139, 460
ApeKI GCWGC 3 cut(s) 115, 233, 565
ApoI RAATTY 1 cut(s) 148
Asp700I GAANNNNTTC 1 cut(s) 39
AspLEI GCGC 1 cut(s) 570
AspS9I GGNCC 1 cut(s) 436
AsuC2I CCSGG 2 cut(s) 427, 590
AvaII GGWCC 1 cut(s) 436
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BalI TGGCCA 1 cut(s) 141
BamHI GGATCC 1 cut(s) 422
BanII GRGCYC 1 cut(s) 458
BauI CACGAG 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 3 cut(s) 127, 245, 577
BceAI ACGGC 1 cut(s) 447
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 2 cut(s) 230, 420
BciVI GTATCC 1 cut(s) 125
BcnI CCSGG 2 cut(s) 427, 590
BcoDI GTCTC 5 cut(s) 183, 466, 470, 502, 519
BfaI CTAG 3 cut(s) 32, 182, 530
BfmI CTRYAG 1 cut(s) 113
BfuI GTATCC 1 cut(s) 125
BisI GCNGC 3 cut(s) 116, 234, 566
BlsI GCNGC 3 cut(s) 117, 235, 567
Bme1390I CCNGG 4 cut(s) 230, 420, 427, 590
Bme18I GGWCC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 436
BmiI GGNNCC 3 cut(s) 424, 438, 632
BmrFI CCNGG 4 cut(s) 230, 420, 427, 590
BmsI GCATC 1 cut(s) 532
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BpuMI CCSGG 2 cut(s) 427, 590
BsaJI CCNNGG 1 cut(s) 161
Bsc4I CCNNNNNNNGG 3 cut(s) 346, 425, 507
Bse1I ACTGG 1 cut(s) 634
BseBI CCWGG 2 cut(s) 230, 420
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 3 cut(s) 171, 268, 523
BseLI CCNNNNNNNGG 3 cut(s) 346, 425, 507
BseMII CTCAG 1 cut(s) 481
BseNI ACTGG 1 cut(s) 634
BseRI GAGGAG 1 cut(s) 490
BseX3I CGGCCG 1 cut(s) 460
BseXI GCAGC 3 cut(s) 127, 245, 577
Bsh1285I CGRYCG 2 cut(s) 463, 594
BshFI GGCC 2 cut(s) 141, 462
BsiEI CGRYCG 2 cut(s) 463, 594
BsiHKAI GWGCWC 1 cut(s) 458
BsiSI CCGG 4 cut(s) 426, 459, 590, 609
BslI CCNNNNNNNGG 3 cut(s) 346, 425, 507
BsmAI GTCTC 5 cut(s) 183, 466, 470, 502, 519
BsmBI CGTCTC 2 cut(s) 470, 502
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 2 cut(s) 141, 462
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 6 cut(s) 93, 198, 265, 422, 431, 487
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 1 cut(s) 552
BspANI GGCC 2 cut(s) 141, 462
BspCNI CTCAG 1 cut(s) 480
BspLI GGNNCC 3 cut(s) 424, 438, 632
BspMAI CTGCAG 1 cut(s) 117
BspPI GGATC 3 cut(s) 101, 417, 430
BsrI ACTGG 1 cut(s) 634
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 6 cut(s) 93, 198, 265, 422, 431, 487
BssSI CACGAG 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 307
Bst2UI CCWGG 2 cut(s) 230, 420
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 1 cut(s) 299
BstC8I GCNNGC 3 cut(s) 120, 143, 454
BstDEI CTNAG 2 cut(s) 5, 467
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 3 cut(s) 171, 268, 523
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 6 cut(s) 96, 201, 268, 425, 434, 490
BstMAI GTCTC 5 cut(s) 183, 466, 470, 502, 519
BstMBI GATC 6 cut(s) 93, 198, 265, 422, 431, 487
BstMCI CGRYCG 2 cut(s) 463, 594
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNI CCWGG 2 cut(s) 230, 420
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 4 cut(s) 228, 418, 425, 588
BstSFI CTRYAG 1 cut(s) 113
BstV1I GCAGC 3 cut(s) 127, 245, 577
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
BstZI CGGCCG 1 cut(s) 460
BsuI GTATCC 1 cut(s) 125
BsuRI GGCC 2 cut(s) 141, 462
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 3 cut(s) 171, 268, 523
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 255, 641
Cac8I GCNNGC 3 cut(s) 120, 143, 454
CfoI GCGC 1 cut(s) 570
Cfr13I GGNCC 1 cut(s) 436
CviAII CATG 5 cut(s) 162, 175, 336, 561, 627
CviJI RGCY 8 cut(s) 118, 141, 145, 358, 456, 462, 536, 606
CviKI_1 RGCY 8 cut(s) 118, 141, 145, 358, 456, 462, 536, 606
DdeI CTNAG 2 cut(s) 5, 467
DpnI GATC 6 cut(s) 95, 200, 267, 424, 433, 489
DpnII GATC 6 cut(s) 93, 198, 265, 422, 431, 487
EaeI YGGCCR 2 cut(s) 139, 460
EagI CGGCCG 1 cut(s) 460
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Ecl136II GAGCTC 1 cut(s) 456
EclXI CGGCCG 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 458
Eco47I GGWCC 1 cut(s) 436
Eco52I CGGCCG 1 cut(s) 460
Eco53kI GAGCTC 1 cut(s) 456
EcoICRI GAGCTC 1 cut(s) 456
EcoRII CCWGG 2 cut(s) 228, 418
EcoT14I CCWWGG 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 458
ErhI CCWWGG 1 cut(s) 161
Esp3I CGTCTC 2 cut(s) 470, 502
FaeI CATG 5 cut(s) 165, 178, 339, 564, 630
FatI CATG 5 cut(s) 161, 174, 335, 560, 626
Fnu4HI GCNGC 3 cut(s) 116, 234, 566
FokI GGATG 3 cut(s) 178, 255, 510
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 3 cut(s) 116, 234, 566
FspBI CTAG 3 cut(s) 32, 182, 530
GlaI GCGC 1 cut(s) 569
GluI GCNGC 3 cut(s) 116, 234, 566
HaeIII GGCC 2 cut(s) 141, 462
HapII CCGG 4 cut(s) 426, 459, 590, 609
HhaI GCGC 1 cut(s) 570
Hin1II CATG 5 cut(s) 165, 178, 339, 564, 630
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 2 cut(s) 9, 40
HpaII CCGG 4 cut(s) 426, 459, 590, 609
Hpy188I TCNGA 5 cut(s) 20, 284, 436, 586, 596
Hpy188III TCNNGA 6 cut(s) 32, 182, 272, 307, 469, 485
Hpy99I CGWCG 1 cut(s) 617
HpyAV CCTTC 2 cut(s) 163, 235
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 3 cut(s) 276, 601, 615
HpyCH4V TGCA 3 cut(s) 115, 413, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 2 cut(s) 5, 467
HpySE526I ACGT 3 cut(s) 276, 601, 615
Hsp92II CATG 5 cut(s) 165, 178, 339, 564, 630
HspAI GCGC 1 cut(s) 568
Kzo9I GATC 6 cut(s) 93, 198, 265, 422, 431, 487
LmnI GCTCC 2 cut(s) 461, 611
Lsp1109I GCAGC 3 cut(s) 127, 245, 577
LweI GCATC 1 cut(s) 532
MaeI CTAG 3 cut(s) 32, 182, 530
MaeII ACGT 3 cut(s) 276, 601, 615
MaeIII GTNAC 1 cut(s) 619
MalI GATC 6 cut(s) 95, 200, 267, 424, 433, 489
MboI GATC 6 cut(s) 93, 198, 265, 422, 431, 487
MboII GAAGA 4 cut(s) 218, 221, 286, 416
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 1 cut(s) 458
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 1 cut(s) 148
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 1 cut(s) 3
MmeI TCCRAC 2 cut(s) 109, 574
MnlI CCTC 5 cut(s) 39, 302, 308, 511, 537
Mox20I TGGCCA 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 39
MscI TGGCCA 1 cut(s) 141
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 334
Msp20I TGGCCA 1 cut(s) 141
MspI CCGG 4 cut(s) 426, 459, 590, 609
MspR9I CCNGG 4 cut(s) 230, 420, 427, 590
Mva1269I GAATGC 1 cut(s) 156
MvaI CCWGG 2 cut(s) 230, 420
MwoI GCNNNNNNNGC 1 cut(s) 449
NciI CCSGG 2 cut(s) 427, 590
NcoI CCATGG 1 cut(s) 161
NdeII GATC 6 cut(s) 93, 198, 265, 422, 431, 487
NlaIII CATG 5 cut(s) 165, 178, 339, 564, 630
NlaIV GGNNCC 3 cut(s) 424, 438, 632
NmuCI GTSAC 1 cut(s) 619
NspI RCATGY 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PctI GAATGC 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 40
PflFI GACNNNGTC 1 cut(s) 590
PfoI TCCNGGA 1 cut(s) 425
PkrI GCNGC 3 cut(s) 117, 235, 567
PleI GAGTC 1 cut(s) 3
PpsI GAGTC 1 cut(s) 3
Psp124BI GAGCTC 1 cut(s) 458
Psp6I CCWGG 2 cut(s) 228, 418
PspGI CCWGG 2 cut(s) 228, 418
PspN4I GGNNCC 3 cut(s) 424, 438, 632
PspPI GGNCC 1 cut(s) 436
PstI CTGCAG 1 cut(s) 117
PsuI RGATCY 1 cut(s) 422
PsyI GACNNNGTC 1 cut(s) 590
RseI CAYNNNNRTG 1 cut(s) 334
SacI GAGCTC 1 cut(s) 458
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 3 cut(s) 116, 234, 566
Sau3AI GATC 6 cut(s) 93, 198, 265, 422, 431, 487
Sau96I GGNCC 1 cut(s) 436
SchI GAGTC 1 cut(s) 3
ScrFI CCNGG 4 cut(s) 230, 420, 427, 590
SduI GDGCHC 1 cut(s) 458
SetI ASST 9 cut(s) 174, 227, 279, 294, 360, 458, 604, 608, 618
SfaNI GCATC 1 cut(s) 532
SfcI CTRYAG 1 cut(s) 113
SinI GGWCC 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 1 cut(s) 148
SsiI CCGC 1 cut(s) 552
SspMI CTAG 3 cut(s) 32, 182, 530
SstI GAGCTC 1 cut(s) 458
StyD4I CCNGG 4 cut(s) 228, 418, 425, 588
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 3 cut(s) 279, 604, 618
TaqI TCGA 3 cut(s) 204, 326, 402
TasI AATT 1 cut(s) 148
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 2 cut(s) 262, 641
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 3 cut(s) 115, 233, 565
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 2 cut(s) 182, 615
TspGWI ACGGA 1 cut(s) 493
TspRI CASTG 2 cut(s) 262, 641
Tth111I GACNNNGTC 1 cut(s) 590
VpaK11BI GGWCC 1 cut(s) 436
XapI RAATTY 1 cut(s) 148
XbaI TCTAGA 2 cut(s) 31, 181
XceI RCATGY 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 3 cut(s) 32, 182, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.