Rorug07G0249000

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000419
Physical Location & Seq
Forward (+)
23057861 .. 23058734
874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0249000.1

Sequence Viewer

Length: 354 bp
ATGGCTAGCTCGACCGCTATGAAGCTTACTTTGGTCGCTCTCTTGTGCATGGTGGTTGCTTTGCCCCTTGCCCAAGCCATCACATGCGGCCAAGTGACGAGCAACGTTTCACCTTGCCTAAACTACGTGAAGAATGGCGGCGCTGTCCCTGCCGCTTGCTGCAGCGGAGTTGGAAACCTTAACGCCATGGCCAAGACCACCCCTGACCGCCAGACCACCTGCAATTGCCTCAAACAGCTTGCCGGTAGCACGAAAGGAATCAACCCTGACCTTGCAGCTGGTGTTCCCGGCAAGTGTGGAGTTAACGTTCCGTTCAAGATCAGCCCCTCCACCGACTGCGCCACCCTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

117

Amino Acids

11.74

Weight (kDa)

8.95

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 20 - 105 5.1e-07 Probable lipid transfer
Tryp_alpha_amyl PF00234 29 - 113 1.5e-14 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 227
AciI CCGC 6 cut(s) 15, 87, 138, 153, 165, 208
AclI AACGTT 2 cut(s) 105, 306
AcoI YGGCCR 2 cut(s) 88, 189
AgsI TTSAA 1 cut(s) 316
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AloI GAACNNNNNNTCC 2 cut(s) 291, 323
AluBI AGCT 4 cut(s) 9, 25, 238, 278
AluI AGCT 4 cut(s) 9, 25, 238, 278
AoxI GGCC 2 cut(s) 88, 189
ApeKI GCWGC 3 cut(s) 159, 162, 275
AspLEI GCGC 2 cut(s) 143, 341
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 102
AsuNHI GCTAGC 1 cut(s) 5
BalI TGGCCA 1 cut(s) 191
BbvI GCAGC 3 cut(s) 146, 174, 287
BccI CCATC 1 cut(s) 86
BcnI CCSGG 1 cut(s) 288
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 160
BfoI RGCGCY 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 227
BisI GCNGC 6 cut(s) 88, 139, 153, 160, 163, 276
BlsI GCNGC 6 cut(s) 89, 140, 154, 161, 164, 277
Bme1390I CCNGG 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 288
BmtI GCTAGC 1 cut(s) 9
BpuMI CCSGG 1 cut(s) 288
BsaAI YACGTR 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bse118I RCCGGY 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 186
BseXI GCAGC 3 cut(s) 146, 174, 287
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 2 cut(s) 90, 191
BsiEI CGRYCG 1 cut(s) 15
BsiSI CCGG 2 cut(s) 243, 288
BslFI GGGAC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 2 cut(s) 90, 191
Bsp143I GATC 1 cut(s) 318
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 6 cut(s) 15, 87, 138, 153, 165, 208
BspANI GGCC 2 cut(s) 90, 191
BspMAI CTGCAG 1 cut(s) 164
BspMI ACCTGC 1 cut(s) 227
BspOI GCTAGC 1 cut(s) 9
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 3 cut(s) 7, 157, 240
BstDSI CCRYGG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 2 cut(s) 143, 341
BstKTI GATC 1 cut(s) 321
BstMBI GATC 1 cut(s) 318
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 286
BstSFI CTRYAG 1 cut(s) 160
BstV1I GCAGC 3 cut(s) 146, 174, 287
BsuRI GGCC 2 cut(s) 90, 191
BtgI CCRYGG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 3 cut(s) 7, 157, 240
CfoI GCGC 2 cut(s) 143, 341
Cfr10I RCCGGY 1 cut(s) 242
CviAII CATG 3 cut(s) 49, 84, 187
CviJI RGCY 9 cut(s) 5, 9, 25, 77, 90, 191, 238, 278, 324
CviKI_1 RGCY 9 cut(s) 5, 9, 25, 77, 90, 191, 238, 278, 324
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
EaeI YGGCCR 2 cut(s) 88, 189
Eco130I CCWWGG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 3 cut(s) 52, 87, 190
FaiI YATR 4 cut(s) 20, 50, 85, 188
FaqI GGGAC 1 cut(s) 131
FatI CATG 3 cut(s) 48, 83, 186
Fnu4HI GCNGC 6 cut(s) 88, 139, 153, 160, 163, 276
Fsp4HI GCNGC 6 cut(s) 88, 139, 153, 160, 163, 276
FspBI CTAG 1 cut(s) 6
GlaI GCGC 2 cut(s) 142, 340
GluI GCNGC 6 cut(s) 88, 139, 153, 160, 163, 276
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 2 cut(s) 90, 191
HapII CCGG 2 cut(s) 243, 288
HhaI GCGC 2 cut(s) 143, 341
Hin1II CATG 3 cut(s) 52, 87, 190
Hin6I GCGC 2 cut(s) 141, 339
HinP1I GCGC 2 cut(s) 141, 339
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 1 cut(s) 258
HpaI GTTAAC 1 cut(s) 304
HpaII CCGG 2 cut(s) 243, 288
HphI GGTGA 1 cut(s) 102
Hpy166II GTNNAC 1 cut(s) 304
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 304
HpyCH4IV ACGT 3 cut(s) 105, 126, 306
HpyCH4V TGCA 4 cut(s) 48, 162, 222, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpySE526I ACGT 3 cut(s) 105, 126, 306
Hsp92II CATG 3 cut(s) 52, 87, 190
HspAI GCGC 2 cut(s) 141, 339
KspAI GTTAAC 1 cut(s) 304
Kzo9I GATC 1 cut(s) 318
LpnPI CCDG 8 cut(s) 162, 216, 224, 232, 256, 264, 279, 301
Lsp1109I GCAGC 3 cut(s) 146, 174, 287
MaeI CTAG 1 cut(s) 6
MaeII ACGT 3 cut(s) 105, 126, 306
MaeIII GTNAC 1 cut(s) 94
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 1 cut(s) 142
MfeI CAATTG 1 cut(s) 223
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 1 cut(s) 223
MluNI TGGCCA 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 2 cut(s) 239, 337
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
MseI TTAA 2 cut(s) 180, 303
Msp20I TGGCCA 1 cut(s) 191
MspA1I CMGCKG 2 cut(s) 165, 278
MspI CCGG 2 cut(s) 243, 288
MspR9I CCNGG 1 cut(s) 288
MunI CAATTG 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 149
NciI CCSGG 1 cut(s) 288
NcoI CCATGG 1 cut(s) 186
NdeII GATC 1 cut(s) 318
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 3 cut(s) 52, 87, 190
NmuCI GTSAC 1 cut(s) 94
NspI RCATGY 1 cut(s) 87
PaqCI CACCTGC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 258
PkrI GCNGC 6 cut(s) 89, 140, 154, 161, 164, 277
Ppu21I YACGTR 1 cut(s) 127
Psp1406I AACGTT 2 cut(s) 105, 306
PstI CTGCAG 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 278
SaqAI TTAA 2 cut(s) 180, 303
SatI GCNGC 6 cut(s) 88, 139, 153, 160, 163, 276
Sau3AI GATC 1 cut(s) 318
ScrFI CCNGG 1 cut(s) 288
SfcI CTRYAG 1 cut(s) 160
Sse9I AATT 1 cut(s) 223
SsiI CCGC 6 cut(s) 15, 87, 138, 153, 165, 208
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 186
TaiI ACGT 3 cut(s) 108, 129, 309
TaqI TCGA 1 cut(s) 11
TasI AATT 1 cut(s) 223
TauI GCSGC 3 cut(s) 90, 141, 155
TfiI GAWTC 1 cut(s) 258
Tru1I TTAA 2 cut(s) 180, 303
Tru9I TTAA 2 cut(s) 180, 303
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 3 cut(s) 159, 162, 275
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 300
XceI RCATGY 1 cut(s) 87
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.