Rmu_sc0006112.1_g000002

Zinc finger BED domain-containing protein RICESLEEPER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006112.1
OG0000419
Physical Location & Seq
Reverse (-)
19674 .. 24079
4406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006112.1_g000002.1.cds

Sequence Viewer

Length: 1806 bp
atgactagcccgtctcaaacggcagacagtaaaggcttatcaagaccattgacggctgttgctttgccaaaaagcaaacatactccaactggagtaataaatgtttttaattatgaattaagaacttttgctgatcctgtgttcagaactggcaggaggctagcttatcaccagaaggcaatcttggataatctcttatatgcctttcaagaaagaaacagtgatccagaaagtgctcgaattcctatcatagcactaaaagaatcagattggttcgacttccataatctgataggaaggcacaattccgaggcctgtattcctccaactctcttcattattgttggaccttatgttggaagatacttagtcaatgttcagagtgaacatcctcaagaacacaagctttggcttgttgaaaatggttttgtccataatctgtggactaaaacaaatgatgatctcaaggaactgccccctattattgtcaacacagtcaagaatgtcagaaaaaatgactgcaagctgagactgaagttcatatccactccaccagagtggatacataaaacaaatggtgaagttgagtacatttctccatatcattatgtgagaattattcaaagaagatatcttcagcccgcttgtgttgcctacaatggccagccaaattcaagcattccatggatgaaggccatgtcactagagtatatcaaaaagatcatctctgaagatacaaagaatacattcctggcagcaggagaaaaaataattatcactgcttacgatcatcctgacgtagtcagcagtgaccatttcctatctctcacaagacaagagatagactcgatactggcatgcttacagtgggttgaaaagcttgaaacaaacaaccactacaagatgcatgttgatacagatgtcgaagataatgcaacaactactcttatagcccaggcagataacgactcgtttgtccttggcaatctaccgatctcagtctctacgaacgaacaccacggatctccatctccggcgtctctctcagccatctccgacgtctccttcttctccgacgtctctcttttctccgagctccggcaatctcagtctctacgaacgaacaccacagccatctccgacgtctccctcttctctgacgtctctctattctccgtgctccgatatatgatggaaggaactcaaggagctccaggaactctaactggatcaagcataggcaccactcaatcccagctggatcctgcagcagctatgggagtttttccattagcccagcctgcttctaatactgcaactactactgatactgcagcatctgagcaacctgcagctgactctgcgcctaaaaggaagaacaagagcatagcttgggatcacttcactaagctcaccaatcctgatggttcgagcaaaatgcaactactgcctcgagcaaaatgcaactactgcccgcaaacatattatgtgcactccaagtcgaatgggacttcaagtatgaggaaccacatgttgtatgtctgccggaagtgtcccttatacataccgtcgaagaaacaaaagcatctggtctttgattatgctgataatggaggtaatattactgcacttgggtatgaagaaagcaggtctagaatgttttgtgctaaaatgatcattagggatgagttaccctttagttttgttgaggcaccgggttttattgattttgtgaaggtaactcagcctttatttaaaccaccttcccgtaggcaagtagttagagatatctgggatctctactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

601

Amino Acids

67.55

Weight (kDa)

7.64

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 10, 974
AatII GACGTC 4 cut(s) 1062, 1080, 1146, 1164
Acc36I ACCTGC 2 cut(s) 1357, 1638
AccB1I GGYRCC 2 cut(s) 1241, 1711
AciI CCGC 2 cut(s) 642, 1475
AclWI GGATC 8 cut(s) 128, 218, 1030, 1237, 1256, 1269, 1404, 1803
AcoI YGGCCR 1 cut(s) 661
AcsI RAATTY 2 cut(s) 240, 670
AcuI CTGAAG 3 cut(s) 554, 620, 750
AcyI GRCGYC 5 cut(s) 1037, 1059, 1077, 1143, 1161
AfaI GTAC 1 cut(s) 590
AfiI CCNNNNNNNGG 2 cut(s) 356, 1098
AflIII ACRYGT 1 cut(s) 1530
AgsI TTSAA 7 cut(s) 209, 419, 623, 675, 875, 884, 1515
AjnI CCWGG 3 cut(s) 750, 954, 1213
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AleI CACNNNNGTG 1 cut(s) 556
Alw21I GWGCWC 5 cut(s) 238, 1098, 1182, 1213, 1494
Alw26I GTCTC 9 cut(s) 18, 523, 1006, 1044, 1066, 1084, 1116, 1150, 1168
Alw44I GTGCAC 1 cut(s) 1490
AlwI GGATC 8 cut(s) 128, 218, 1030, 1237, 1256, 1269, 1404, 1803
AlwNI CAGNNNCTG 1 cut(s) 1340
Ama87I CYCGRG 1 cut(s) 1452
AoxI GGCC 3 cut(s) 312, 661, 693
ApaLI GTGCAC 1 cut(s) 1490
ApeKI GCWGC 5 cut(s) 755, 1268, 1271, 1334, 1352
ApoI RAATTY 2 cut(s) 240, 670
Asp700I GAANNNNTTC 1 cut(s) 746
AspLEI GCGC 1 cut(s) 1366
AspS9I GGNCC 1 cut(s) 347
AsuC2I CCSGG 1 cut(s) 1716
AsuHPI GGTGA 3 cut(s) 161, 590, 1405
AsuNHI GCTAGC 1 cut(s) 160
AvaI CYCGRG 1 cut(s) 1452
AvaII GGWCC 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 1494
BaeI ACNNNNGTAYC 2 cut(s) 906, 939
BalI TGGCCA 1 cut(s) 663
BamHI GGATCC 1 cut(s) 1261
BanI GGYRCC 2 cut(s) 1241, 1711
BanII GRGCYC 2 cut(s) 1098, 1213
Bbv12I GWGCWC 5 cut(s) 238, 1098, 1182, 1213, 1494
BbvI GCAGC 5 cut(s) 767, 1280, 1283, 1346, 1364
BccI CCATC 5 cut(s) 1036, 1058, 1142, 1186, 1418
BceAI ACGGC 2 cut(s) 36, 69
BcgI CGANNNNNNTGC 6 cut(s) 914, 948, 1420, 1443, 1454, 1477
BciT130I CCWGG 3 cut(s) 752, 956, 1215
BciVI GTATCC 1 cut(s) 555
BclI TGATCA 1 cut(s) 1674
BcnI CCSGG 1 cut(s) 1716
BcoDI GTCTC 9 cut(s) 18, 523, 1006, 1044, 1066, 1084, 1116, 1150, 1168
BfaI CTAG 4 cut(s) 6, 161, 704, 1653
BfmI CTRYAG 3 cut(s) 1266, 1332, 1350
BfuAI ACCTGC 2 cut(s) 1357, 1638
BfuI GTATCC 1 cut(s) 555
BisI GCNGC 5 cut(s) 756, 1269, 1272, 1335, 1353
BlsI GCNGC 5 cut(s) 757, 1270, 1273, 1336, 1354
Bme1390I CCNGG 4 cut(s) 752, 956, 1215, 1716
Bme18I GGWCC 1 cut(s) 347
BmeT110I CYCGRG 1 cut(s) 1452
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 4 cut(s) 1243, 1263, 1526, 1713
BmrFI CCNGG 4 cut(s) 752, 956, 1215, 1716
BmsI GCATC 3 cut(s) 894, 1346, 1594
BmtI GCTAGC 1 cut(s) 164
BplI GAGNNNNNCTC 2 cut(s) 830, 862
BpmI CTGGAG 2 cut(s) 111, 1197
BpuEI CTTGAG 3 cut(s) 378, 449, 1188
BpuMI CCSGG 1 cut(s) 1716
BsaBI GATNNNNATC 1 cut(s) 1027
BsaHI GRCGYC 5 cut(s) 1037, 1059, 1077, 1143, 1161
BsaJI CCNNGG 5 cut(s) 309, 683, 954, 979, 1018
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 1098
Bse1I ACTGG 4 cut(s) 94, 154, 858, 1231
Bse8I GATNNNNATC 1 cut(s) 1027
BseBI CCWGG 3 cut(s) 752, 956, 1215
BseDI CCNNGG 5 cut(s) 309, 683, 954, 979, 1018
BseGI GGATG 4 cut(s) 388, 693, 790, 1690
BseJI GATNNNNATC 1 cut(s) 1027
BseLI CCNNNNNNNGG 2 cut(s) 356, 1098
BseMII CTCAG 6 cut(s) 518, 1011, 1059, 1121, 1332, 1757
BseNI ACTGG 4 cut(s) 94, 154, 858, 1231
BseSI GKGCMC 1 cut(s) 1494
BseXI GCAGC 5 cut(s) 767, 1280, 1283, 1346, 1364
BseYI CCCAGC 2 cut(s) 1254, 1296
BsgI GTGCAG 1 cut(s) 1611
BshFI GGCC 3 cut(s) 314, 663, 695
BshNI GGYRCC 2 cut(s) 1241, 1711
BsiHKAI GWGCWC 5 cut(s) 238, 1098, 1182, 1213, 1494
BsiHKCI CYCGRG 1 cut(s) 1452
BsiSI CCGG 4 cut(s) 1034, 1099, 1546, 1715
BslFI GGGAC 2 cut(s) 1522, 1539
BslI CCNNNNNNNGG 2 cut(s) 356, 1098
BsmAI GTCTC 9 cut(s) 18, 523, 1006, 1044, 1066, 1084, 1116, 1150, 1168
BsmBI CGTCTC 6 cut(s) 18, 1044, 1066, 1084, 1150, 1168
BsmFI GGGAC 2 cut(s) 1522, 1539
BsmI GAATGC 1 cut(s) 678
BsnI GGCC 3 cut(s) 314, 663, 695
BsoBI CYCGRG 1 cut(s) 1452
Bsp1286I GDGCHC 5 cut(s) 238, 1098, 1182, 1213, 1494
Bsp19I CCATGG 1 cut(s) 683
BspACI CCGC 2 cut(s) 642, 1475
BspANI GGCC 3 cut(s) 314, 663, 695
BspCNI CTCAG 6 cut(s) 519, 1010, 1058, 1120, 1333, 1756
BspLI GGNNCC 4 cut(s) 1243, 1263, 1526, 1713
BspMAI CTGCAG 3 cut(s) 1270, 1336, 1354
BspMI ACCTGC 2 cut(s) 1357, 1638
BspOI GCTAGC 1 cut(s) 164
BspPI GGATC 8 cut(s) 128, 218, 1030, 1237, 1256, 1269, 1404, 1803
BspT107I GGYRCC 2 cut(s) 1241, 1711
BsrI ACTGG 4 cut(s) 94, 154, 858, 1231
BssECI CCNNGG 5 cut(s) 309, 683, 954, 979, 1018
BssNI GRCGYC 5 cut(s) 1037, 1059, 1077, 1143, 1161
BssT1I CCWWGG 2 cut(s) 683, 979
Bst2UI CCWGG 3 cut(s) 752, 956, 1215
Bst4CI ACNGT 5 cut(s) 29, 221, 496, 867, 1569
Bst6I CTCTTC 2 cut(s) 338, 1157
BstACI GRCGYC 5 cut(s) 1037, 1059, 1077, 1143, 1161
BstAPI GCANNNNNTGC 2 cut(s) 1447, 1470
BstC8I GCNNGC 7 cut(s) 162, 524, 642, 665, 859, 1302, 1475
BstDEI CTNAG 8 cut(s) 367, 527, 997, 1045, 1107, 1341, 1407, 1743
BstDSI CCRYGG 2 cut(s) 683, 1018
BstF5I GGATG 4 cut(s) 388, 693, 790, 1690
BstHHI GCGC 1 cut(s) 1366
BstMAI GTCTC 9 cut(s) 18, 523, 1006, 1044, 1066, 1084, 1116, 1150, 1168
BstMWI GCNNNNNNNGC 5 cut(s) 650, 1301, 1361, 1447, 1470
BstNI CCWGG 3 cut(s) 752, 956, 1215
BstNSI RCATGY 3 cut(s) 861, 911, 1534
BstSCI CCNGG 4 cut(s) 750, 954, 1213, 1714
BstSFI CTRYAG 3 cut(s) 1266, 1332, 1350
BstSLI GKGCMC 1 cut(s) 1494
BstV1I GCAGC 5 cut(s) 767, 1280, 1283, 1346, 1364
BstX2I RGATCY 3 cut(s) 1022, 1261, 1795
BstXI CCANNNNNNTGG 1 cut(s) 558
BstYI RGATCY 3 cut(s) 1022, 1261, 1795
BsuI GTATCC 1 cut(s) 555
BsuRI GGCC 3 cut(s) 314, 663, 695
BtgI CCRYGG 2 cut(s) 683, 1018
BtsCI GGATG 4 cut(s) 388, 693, 790, 1690
BtsI GCAGTG 2 cut(s) 777, 814
BtsIMutI CAGTG 4 cut(s) 226, 777, 814, 872
BveI ACCTGC 2 cut(s) 1357, 1638
Cac8I GCNNGC 7 cut(s) 162, 524, 642, 665, 859, 1302, 1475
CaiI CAGNNNCTG 1 cut(s) 1340
CfoI GCGC 1 cut(s) 1366
Cfr13I GGNCC 1 cut(s) 347
CseI GACGC 1 cut(s) 1026
Csp6I GTAC 1 cut(s) 589
CviAII CATG 5 cut(s) 684, 697, 858, 908, 1531
CviQI GTAC 1 cut(s) 589
DdeI CTNAG 8 cut(s) 367, 527, 997, 1045, 1107, 1341, 1407, 1743
DraI TTTAAA 1 cut(s) 1756
DrdI GACNNNNNNGTC 2 cut(s) 10, 974
DseDI GACNNNNNNGTC 2 cut(s) 10, 974
EaeI YGGCCR 1 cut(s) 661
Eam1104I CTCTTC 2 cut(s) 338, 1157
EarI CTCTTC 2 cut(s) 338, 1157
Ecl136II GAGCTC 2 cut(s) 1096, 1211
Eco130I CCWWGG 2 cut(s) 683, 979
Eco147I AGGCCT 1 cut(s) 314
Eco24I GRGCYC 2 cut(s) 1098, 1213
Eco32I GATATC 2 cut(s) 632, 1789
Eco47I GGWCC 1 cut(s) 347
Eco53kI GAGCTC 2 cut(s) 1096, 1211
Eco57I CTGAAG 3 cut(s) 554, 620, 750
Eco88I CYCGRG 1 cut(s) 1452
EcoICRI GAGCTC 2 cut(s) 1096, 1211
EcoRI GAATTC 1 cut(s) 240
EcoRII CCWGG 3 cut(s) 750, 954, 1213
EcoRV GATATC 2 cut(s) 632, 1789
EcoT14I CCWWGG 2 cut(s) 683, 979
EcoT22I ATGCAT 1 cut(s) 909
EcoT38I GRGCYC 2 cut(s) 1098, 1213
ErhI CCWWGG 2 cut(s) 683, 979
Esp3I CGTCTC 6 cut(s) 18, 1044, 1066, 1084, 1150, 1168
FaeI CATG 5 cut(s) 687, 700, 861, 911, 1534
FalI AAGNNNNNCTT 4 cut(s) 167, 199, 1541, 1573
FaqI GGGAC 2 cut(s) 1522, 1539
FatI CATG 5 cut(s) 683, 696, 857, 907, 1530
FauI CCCGC 2 cut(s) 649, 1482
FbaI TGATCA 1 cut(s) 1674
Fnu4HI GCNGC 5 cut(s) 756, 1269, 1272, 1335, 1353
FokI GGATG 4 cut(s) 375, 700, 777, 1697
FriOI GRGCYC 2 cut(s) 1098, 1213
Fsp4HI GCNGC 5 cut(s) 756, 1269, 1272, 1335, 1353
FspBI CTAG 4 cut(s) 6, 161, 704, 1653
GlaI GCGC 1 cut(s) 1365
GluI GCNGC 5 cut(s) 756, 1269, 1272, 1335, 1353
GsaI CCCAGC 2 cut(s) 1258, 1300
GsuI CTGGAG 2 cut(s) 111, 1197
HaeIII GGCC 3 cut(s) 314, 663, 695
HapII CCGG 4 cut(s) 1034, 1099, 1546, 1715
HgaI GACGC 1 cut(s) 1026
HhaI GCGC 1 cut(s) 1366
Hin1I GRCGYC 5 cut(s) 1037, 1059, 1077, 1143, 1161
Hin1II CATG 5 cut(s) 687, 700, 861, 911, 1534
Hin6I GCGC 1 cut(s) 1364
HinP1I GCGC 1 cut(s) 1364
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HindIII AAGCTT 2 cut(s) 404, 878
HinfI GANTC 4 cut(s) 263, 845, 968, 1358
HpaII CCGG 4 cut(s) 1034, 1099, 1546, 1715
HphI GGTGA 3 cut(s) 161, 590, 1405
Hpy166II GTNNAC 4 cut(s) 386, 444, 490, 1492
Hpy188III TCNNGA 8 cut(s) 42, 209, 227, 395, 499, 794, 1421, 1653
Hpy8I GTNNAC 4 cut(s) 386, 444, 490, 1492
Hpy99I CGWCG 4 cut(s) 1061, 1079, 1145, 1573
HpyAV CCTTC 7 cut(s) 169, 291, 685, 1075, 1190, 1729, 1773
HpyCH4III ACNGT 5 cut(s) 29, 221, 496, 867, 1569
HpyCH4IV ACGT 5 cut(s) 798, 1059, 1077, 1143, 1161
HpyF10VI GCNNNNNNNGC 5 cut(s) 650, 1301, 1361, 1447, 1470
HpyF3I CTNAG 8 cut(s) 367, 527, 997, 1045, 1107, 1341, 1407, 1743
HpySE526I ACGT 5 cut(s) 798, 1059, 1077, 1143, 1161
Hsp92I GRCGYC 5 cut(s) 1037, 1059, 1077, 1143, 1161
Hsp92II CATG 5 cut(s) 687, 700, 861, 911, 1534
HspAI GCGC 1 cut(s) 1364
Ksp22I TGATCA 1 cut(s) 1674
LmnI GCTCC 4 cut(s) 1101, 1185, 1208, 1216
Lsp1109I GCAGC 5 cut(s) 767, 1280, 1283, 1346, 1364
LweI GCATC 3 cut(s) 894, 1346, 1594
MaeI CTAG 4 cut(s) 6, 161, 704, 1653
MaeII ACGT 5 cut(s) 798, 1059, 1077, 1143, 1161
MaeIII GTNAC 4 cut(s) 699, 809, 1689, 1738
MflI RGATCY 3 cut(s) 1022, 1261, 1795
MhlI GDGCHC 5 cut(s) 238, 1098, 1182, 1213, 1494
MlsI TGGCCA 1 cut(s) 663
MluCI AATT 7 cut(s) 109, 116, 240, 304, 615, 670, 771
MluNI TGGCCA 1 cut(s) 663
MlyI GAGTC 3 cut(s) 839, 962, 1352
MmeI TCCRAC 7 cut(s) 110, 325, 337, 350, 1080, 1098, 1164
MnlI CCTC 9 cut(s) 150, 304, 333, 402, 1160, 1461, 1515, 1607, 1702
Mox20I TGGCCA 1 cut(s) 663
Mph1103I ATGCAT 1 cut(s) 909
MroXI GAANNNNTTC 1 cut(s) 746
MscI TGGCCA 1 cut(s) 663
MseI TTAA 3 cut(s) 108, 119, 1755
MslI CAYNNNNRTG 1 cut(s) 556
Msp20I TGGCCA 1 cut(s) 663
MspA1I CMGCKG 2 cut(s) 1258, 1355
MspI CCGG 4 cut(s) 1034, 1099, 1546, 1715
MspR9I CCNGG 4 cut(s) 752, 956, 1215, 1716
Mva1269I GAATGC 1 cut(s) 678
MvaI CCWGG 3 cut(s) 752, 956, 1215
MwoI GCNNNNNNNGC 5 cut(s) 650, 1301, 1361, 1447, 1470
NciI CCSGG 1 cut(s) 1716
NcoI CCATGG 1 cut(s) 683
NheI GCTAGC 1 cut(s) 160
NlaIII CATG 5 cut(s) 687, 700, 861, 911, 1534
NlaIV GGNNCC 4 cut(s) 1243, 1263, 1526, 1713
NmuCI GTSAC 2 cut(s) 699, 809
NsiI ATGCAT 1 cut(s) 909
NspI RCATGY 3 cut(s) 861, 911, 1534
OliI CACNNNNGTG 1 cut(s) 556
PaeI GCATGC 1 cut(s) 861
PaeR7I CTCGAG 1 cut(s) 1452
PceI AGGCCT 1 cut(s) 314
PciI ACATGT 1 cut(s) 1530
PctI GAATGC 1 cut(s) 678
PdmI GAANNNNTTC 1 cut(s) 746
PfeI GAWTC 1 cut(s) 263
PflFI GACNNNGTC 1 cut(s) 800
PfoI TCCNGGA 1 cut(s) 1213
PkrI GCNGC 5 cut(s) 757, 1270, 1273, 1336, 1354
PleI GAGTC 3 cut(s) 839, 962, 1352
PpsI GAGTC 3 cut(s) 839, 962, 1352
PscI ACATGT 1 cut(s) 1530
Psp124BI GAGCTC 2 cut(s) 1098, 1213
Psp6I CCWGG 3 cut(s) 750, 954, 1213
PspFI CCCAGC 2 cut(s) 1254, 1296
PspGI CCWGG 3 cut(s) 750, 954, 1213
PspN4I GGNNCC 4 cut(s) 1243, 1263, 1526, 1713
PspPI GGNCC 1 cut(s) 347
PspXI VCTCGAGB 1 cut(s) 1452
PstI CTGCAG 3 cut(s) 1270, 1336, 1354
PstNI CAGNNNCTG 1 cut(s) 1340
PsuI RGATCY 3 cut(s) 1022, 1261, 1795
PsyI GACNNNGTC 1 cut(s) 800
PvuII CAGCTG 2 cut(s) 1258, 1355
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
RseI CAYNNNNRTG 1 cut(s) 556
SacI GAGCTC 2 cut(s) 1098, 1213
SaqAI TTAA 3 cut(s) 108, 119, 1755
SatI GCNGC 5 cut(s) 756, 1269, 1272, 1335, 1353
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 3 cut(s) 839, 962, 1352
ScrFI CCNGG 4 cut(s) 752, 956, 1215, 1716
SduI GDGCHC 5 cut(s) 238, 1098, 1182, 1213, 1494
SfaNI GCATC 3 cut(s) 894, 1346, 1594
SfcI CTRYAG 3 cut(s) 1266, 1332, 1350
Sfr274I CTCGAG 1 cut(s) 1452
SinI GGWCC 1 cut(s) 347
SlaI CTCGAG 1 cut(s) 1452
SmiMI CAYNNNNRTG 1 cut(s) 556
SmlI CTYRAG 4 cut(s) 393, 464, 1203, 1452
SmoI CTYRAG 4 cut(s) 393, 464, 1203, 1452
SphI GCATGC 1 cut(s) 861
Sse9I AATT 7 cut(s) 109, 116, 240, 304, 615, 670, 771
SseBI AGGCCT 1 cut(s) 314
SsiI CCGC 2 cut(s) 642, 1475
SspI AATATT 1 cut(s) 1621
SspMI CTAG 4 cut(s) 6, 161, 704, 1653
SstI GAGCTC 2 cut(s) 1098, 1213
StuI AGGCCT 1 cut(s) 314
StyD4I CCNGG 4 cut(s) 750, 954, 1213, 1714
StyI CCWWGG 2 cut(s) 683, 979
TaaI ACNGT 5 cut(s) 29, 221, 496, 867, 1569
TaiI ACGT 5 cut(s) 801, 1062, 1080, 1146, 1164
TaqI TCGA 8 cut(s) 238, 276, 848, 924, 1430, 1453, 1502, 1571
TasI AATT 7 cut(s) 109, 116, 240, 304, 615, 670, 771
TatI WGTACW 1 cut(s) 588
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 3 cut(s) 108, 119, 1755
Tru9I TTAA 3 cut(s) 108, 119, 1755
TscAI CASTG 4 cut(s) 226, 784, 814, 872
TseFI GTSAC 2 cut(s) 699, 809
TseI GCWGC 5 cut(s) 755, 1268, 1271, 1334, 1352
Tsp45I GTSAC 2 cut(s) 699, 809
TspDTI ATGAA 5 cut(s) 129, 325, 529, 704, 1653
TspGWI ACGGA 2 cut(s) 1035, 1165
TspRI CASTG 4 cut(s) 226, 784, 814, 872
Tth111I GACNNNGTC 1 cut(s) 800
VneI GTGCAC 1 cut(s) 1490
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 2 cut(s) 240, 670
XbaI TCTAGA 1 cut(s) 1652
XceI RCATGY 3 cut(s) 861, 911, 1534
XhoI CTCGAG 1 cut(s) 1452
XmnI GAANNNNTTC 1 cut(s) 746
XspI CTAG 4 cut(s) 6, 161, 704, 1653
ZraI GACGTC 4 cut(s) 1060, 1078, 1144, 1162
Zsp2I ATGCAT 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.