Rmu_sc0010366.1_g000001

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010366.1
OG0000419
Physical Location & Seq
Reverse (-)
380 .. 1691
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010366.1_g000001.1.cds

Sequence Viewer

Length: 1194 bp
atggcaatgtttagccaaagagaagacgacgaaggtcgtaatcccagaagcagaagaactgggaaagaacatgaacctgaagaagatcccatggaaaccaaagaaaaaatccgtaaaaggtttctgctaagtccaaaaggcttagccacaacttatcaatcccagggtaaaggattggctagcccgtctcaaacggaagacggtaaaggctcatcaagaccgttgatggctgctgctttgccaaaaagcagatcaactccaactggagttataaatgtttttaattatgaattaagaacttttgatactcctgtgttcagaactggcaggagattagcttttcatcaaaaggcaatcctggataacctcttatttgcctttcaagaaagaagcagtggtctgatgtttccaactctctttgcattagctgaagaactctacgaaaatggtggaccacagtttgaagaagctcatacacagcagagtgctgtcagaaaagaaaaaattcacttcctcgaaagtccagaaagtgctagggtcctgatcatggcactcaatgaatcagactggcatgaattccatagtctgataggaagacataattcagaagaccaagttcctccaaccgtctttatcgtctcaagaccttatgttggaagatacttagtcaatgttcagagtgaacatcctcaagaacacaagctctggcttgttgaaaatggatccactcctccagaatggatccaaaaggcaaacggcgaagttgaatatattcctccatatcattatgtgagaattatccaaaggaaatatcttcaaccagcctgtgtagggtataatggccaaccaaattcaagcattccatggatgaaggccatgactctagaatatatcaagaagatcatctctaaagatatccacaataccttcctggcagcaggagagaaaatcatcatcactgcttacgatcatcctgacgtagtcagcagtgatctattcctatctcttaccagaaaagagatagattcgacactggcatgcttacggtgggtggaaaaacttgaaactgccaacctctacaagatgtatgttgatacagatgttgaagataatgctactactgttcaaatggcccaggcagacaacaactcttttgtccttggccacaattcagaaacagacgagaatatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

397

Amino Acids

45.31

Weight (kDa)

5.86

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 272
AclWI GGATC 5 cut(s) 80, 717, 730, 736, 749
AcoI YGGCCR 2 cut(s) 841, 1162
AcsI RAATTY 3 cut(s) 504, 575, 850
AcuI CTGAAG 2 cut(s) 99, 450
AfiI CCNNNNNNNGG 3 cut(s) 547, 653, 831
AgsI TTSAA 9 cut(s) 383, 464, 716, 767, 818, 855, 1064, 1106, 1127
AjnI CCWGG 4 cut(s) 162, 357, 930, 1134
AluBI AGCT 4 cut(s) 338, 428, 470, 703
AluI AGCT 4 cut(s) 338, 428, 470, 703
Alw26I GTCTC 2 cut(s) 192, 643
AlwI GGATC 5 cut(s) 80, 717, 730, 736, 749
AoxI GGCC 4 cut(s) 841, 873, 1131, 1162
ApeKI GCWGC 3 cut(s) 230, 233, 935
ApoI RAATTY 3 cut(s) 504, 575, 850
Asp700I GAANNNNTTC 2 cut(s) 504, 771
AspS9I GGNCC 3 cut(s) 452, 538, 1132
AsuNHI GCTAGC 1 cut(s) 179
AvaII GGWCC 2 cut(s) 452, 538
BaeI ACNNNNGTAYC 4 cut(s) 297, 330, 1086, 1119
BalI TGGCCA 2 cut(s) 843, 1164
BamHI GGATCC 2 cut(s) 722, 741
BbsI GAAGAC 4 cut(s) 30, 204, 601, 615
BbvI GCAGC 3 cut(s) 217, 220, 947
BccI CCATC 1 cut(s) 220
BceAI ACGGC 1 cut(s) 772
BciT130I CCWGG 4 cut(s) 164, 359, 932, 1136
BclI TGATCA 1 cut(s) 543
BcoDI GTCTC 2 cut(s) 192, 643
BfaI CTAG 3 cut(s) 180, 534, 884
BisI GCNGC 3 cut(s) 231, 234, 936
BlpI GCTNAGC 1 cut(s) 142
BlsI GCNGC 3 cut(s) 232, 235, 937
Bme1390I CCNGG 4 cut(s) 164, 359, 932, 1136
Bme18I GGWCC 2 cut(s) 452, 538
BmgT120I GGNCC 3 cut(s) 452, 538, 1132
BmiI GGNNCC 3 cut(s) 539, 724, 743
BmrFI CCNGG 4 cut(s) 164, 359, 932, 1136
BmrI ACTGGG 1 cut(s) 69
BmtI GCTAGC 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 69
BoxI GACNNNNGTC 1 cut(s) 33
BpiI GAAGAC 4 cut(s) 30, 204, 601, 615
BpmI CTGGAG 2 cut(s) 285, 717
Bpu1102I GCTNAGC 1 cut(s) 142
BpuEI CTTGAG 2 cut(s) 625, 675
BsaJI CCNNGG 6 cut(s) 90, 162, 163, 863, 1134, 1159
Bsc4I CCNNNNNNNGG 3 cut(s) 547, 653, 831
Bse1I ACTGG 5 cut(s) 64, 268, 328, 572, 1038
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 4 cut(s) 164, 359, 932, 1136
BseDI CCNNGG 6 cut(s) 90, 162, 163, 863, 1134, 1159
BseGI GGATG 3 cut(s) 685, 873, 970
BseLI CCNNNNNNNGG 3 cut(s) 547, 653, 831
BseMI GCAATG 1 cut(s) 12
BseNI ACTGG 5 cut(s) 64, 268, 328, 572, 1038
BseRI GAGGAG 1 cut(s) 720
BseXI GCAGC 3 cut(s) 217, 220, 947
BshFI GGCC 4 cut(s) 843, 875, 1133, 1164
BslI CCNNNNNNNGG 3 cut(s) 547, 653, 831
BsmAI GTCTC 2 cut(s) 192, 643
BsmBI CGTCTC 2 cut(s) 192, 643
BsmI GAATGC 1 cut(s) 858
BsnI GGCC 4 cut(s) 843, 875, 1133, 1164
Bsp143I GATC 8 cut(s) 85, 251, 543, 722, 741, 900, 967, 991
Bsp1720I GCTNAGC 1 cut(s) 142
Bsp19I CCATGG 2 cut(s) 90, 863
BspANI GGCC 4 cut(s) 843, 875, 1133, 1164
BspLI GGNNCC 3 cut(s) 539, 724, 743
BspOI GCTAGC 1 cut(s) 183
BspPI GGATC 5 cut(s) 80, 717, 730, 736, 749
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 5 cut(s) 64, 268, 328, 572, 1038
BssECI CCNNGG 6 cut(s) 90, 162, 163, 863, 1134, 1159
BssMI GATC 8 cut(s) 85, 251, 543, 722, 741, 900, 967, 991
BssT1I CCWWGG 3 cut(s) 90, 863, 1159
Bst2UI CCWGG 4 cut(s) 164, 359, 932, 1136
Bst4CI ACNGT 6 cut(s) 203, 222, 459, 628, 1047, 1123
BstC8I GCNNGC 2 cut(s) 181, 1039
BstDEI CTNAG 3 cut(s) 128, 142, 664
BstDSI CCRYGG 2 cut(s) 90, 863
BstF5I GGATG 3 cut(s) 685, 873, 970
BstKTI GATC 8 cut(s) 88, 254, 546, 725, 744, 903, 970, 994
BstMAI GTCTC 2 cut(s) 192, 643
BstMBI GATC 8 cut(s) 85, 251, 543, 722, 741, 900, 967, 991
BstNI CCWGG 4 cut(s) 164, 359, 932, 1136
BstNSI RCATGY 1 cut(s) 1041
BstPAI GACNNNNGTC 1 cut(s) 33
BstSCI CCNGG 4 cut(s) 162, 357, 930, 1134
BstV1I GCAGC 3 cut(s) 217, 220, 947
BstV2I GAAGAC 4 cut(s) 30, 204, 601, 615
BstX2I RGATCY 3 cut(s) 85, 722, 741
BstYI RGATCY 3 cut(s) 85, 722, 741
BsuRI GGCC 4 cut(s) 843, 875, 1133, 1164
BtgI CCRYGG 2 cut(s) 90, 863
BtsCI GGATG 3 cut(s) 685, 873, 970
BtsI GCAGTG 3 cut(s) 400, 957, 994
BtsIMutI CAGTG 4 cut(s) 400, 957, 994, 1031
Cac8I GCNNGC 2 cut(s) 181, 1039
Cfr13I GGNCC 3 cut(s) 452, 538, 1132
CviAII CATG 7 cut(s) 71, 91, 547, 572, 864, 877, 1038
DdeI CTNAG 3 cut(s) 128, 142, 664
DpnI GATC 8 cut(s) 87, 253, 545, 724, 743, 902, 969, 993
DpnII GATC 8 cut(s) 85, 251, 543, 722, 741, 900, 967, 991
EaeI YGGCCR 2 cut(s) 841, 1162
Eco130I CCWWGG 3 cut(s) 90, 863, 1159
Eco32I GATATC 1 cut(s) 916
Eco47I GGWCC 2 cut(s) 452, 538
Eco57I CTGAAG 2 cut(s) 99, 450
EcoO109I RGGNCCY 1 cut(s) 538
EcoRI GAATTC 1 cut(s) 575
EcoRII CCWGG 4 cut(s) 162, 357, 930, 1134
EcoRV GATATC 1 cut(s) 916
EcoT14I CCWWGG 3 cut(s) 90, 863, 1159
ErhI CCWWGG 3 cut(s) 90, 863, 1159
Esp3I CGTCTC 2 cut(s) 192, 643
FaeI CATG 7 cut(s) 74, 94, 550, 575, 867, 880, 1041
FatI CATG 7 cut(s) 70, 90, 546, 571, 863, 876, 1037
FbaI TGATCA 1 cut(s) 543
Fnu4HI GCNGC 3 cut(s) 231, 234, 936
FokI GGATG 3 cut(s) 672, 880, 957
Fsp4HI GCNGC 3 cut(s) 231, 234, 936
FspBI CTAG 3 cut(s) 180, 534, 884
GluI GCNGC 3 cut(s) 231, 234, 936
GsuI CTGGAG 2 cut(s) 285, 717
HaeIII GGCC 4 cut(s) 843, 875, 1133, 1164
Hin1II CATG 7 cut(s) 74, 94, 550, 575, 867, 880, 1041
HinfI GANTC 3 cut(s) 560, 880, 1025
Hpy166II GTNNAC 2 cut(s) 452, 683
Hpy188I TCNGA 8 cut(s) 320, 402, 494, 565, 588, 607, 678, 1174
Hpy8I GTNNAC 2 cut(s) 452, 683
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 26, 865, 937
HpyCH4III ACNGT 6 cut(s) 203, 222, 459, 628, 1047, 1123
HpyCH4IV ACGT 1 cut(s) 978
HpyCH4V TGCA 1 cut(s) 422
HpyF3I CTNAG 3 cut(s) 128, 142, 664
HpySE526I ACGT 1 cut(s) 978
Hsp92II CATG 7 cut(s) 74, 94, 550, 575, 867, 880, 1041
Ksp22I TGATCA 1 cut(s) 543
Kzo9I GATC 8 cut(s) 85, 251, 543, 722, 741, 900, 967, 991
Lsp1109I GCAGC 3 cut(s) 217, 220, 947
MaeI CTAG 3 cut(s) 180, 534, 884
MaeII ACGT 1 cut(s) 978
MalI GATC 8 cut(s) 87, 253, 545, 724, 743, 902, 969, 993
MboI GATC 8 cut(s) 85, 251, 543, 722, 741, 900, 967, 991
MflI RGATCY 3 cut(s) 85, 722, 741
MlsI TGGCCA 2 cut(s) 843, 1164
MluCI AATT 8 cut(s) 283, 290, 504, 575, 601, 795, 850, 1168
MluNI TGGCCA 2 cut(s) 843, 1164
MlyI GAGTC 1 cut(s) 874
MmeI TCCRAC 4 cut(s) 284, 434, 634, 647
MnlI CCTC 7 cut(s) 377, 524, 630, 699, 741, 786, 1085
Mox20I TGGCCA 2 cut(s) 843, 1164
MroXI GAANNNNTTC 2 cut(s) 504, 771
MscI TGGCCA 2 cut(s) 843, 1164
MseI TTAA 2 cut(s) 282, 293
MslI CAYNNNNRTG 1 cut(s) 1036
Msp20I TGGCCA 2 cut(s) 843, 1164
MspR9I CCNGG 4 cut(s) 164, 359, 932, 1136
Mva1269I GAATGC 1 cut(s) 858
MvaI CCWGG 4 cut(s) 164, 359, 932, 1136
NcoI CCATGG 2 cut(s) 90, 863
NdeII GATC 8 cut(s) 85, 251, 543, 722, 741, 900, 967, 991
NheI GCTAGC 1 cut(s) 179
NlaIII CATG 7 cut(s) 74, 94, 550, 575, 867, 880, 1041
NlaIV GGNNCC 3 cut(s) 539, 724, 743
NspI RCATGY 1 cut(s) 1041
PaeI GCATGC 1 cut(s) 1041
PasI CCCWGGG 1 cut(s) 163
PctI GAATGC 1 cut(s) 858
PdmI GAANNNNTTC 2 cut(s) 504, 771
PfeI GAWTC 2 cut(s) 560, 1025
PflFI GACNNNGTC 1 cut(s) 980
PfoI TCCNGGA 1 cut(s) 357
PkrI GCNGC 3 cut(s) 232, 235, 937
PleI GAGTC 1 cut(s) 874
PpsI GAGTC 1 cut(s) 874
PpuMI RGGWCCY 1 cut(s) 538
PshAI GACNNNNGTC 1 cut(s) 33
PsiI TTATAA 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 538
Psp6I CCWGG 4 cut(s) 162, 357, 930, 1134
PspGI CCWGG 4 cut(s) 162, 357, 930, 1134
PspN4I GGNNCC 3 cut(s) 539, 724, 743
PspPI GGNCC 3 cut(s) 452, 538, 1132
PspPPI RGGWCCY 1 cut(s) 538
PsrI GAACNNNNNNTAC 2 cut(s) 289, 321
PsuI RGATCY 3 cut(s) 85, 722, 741
PsyI GACNNNGTC 1 cut(s) 980
RseI CAYNNNNRTG 1 cut(s) 1036
SaqAI TTAA 2 cut(s) 282, 293
SatI GCNGC 3 cut(s) 231, 234, 936
Sau3AI GATC 8 cut(s) 85, 251, 543, 722, 741, 900, 967, 991
Sau96I GGNCC 3 cut(s) 452, 538, 1132
SchI GAGTC 1 cut(s) 874
ScrFI CCNGG 4 cut(s) 164, 359, 932, 1136
SinI GGWCC 2 cut(s) 452, 538
SmiMI CAYNNNNRTG 1 cut(s) 1036
SmlI CTYRAG 2 cut(s) 640, 690
SmoI CTYRAG 2 cut(s) 640, 690
SphI GCATGC 1 cut(s) 1041
Sse9I AATT 8 cut(s) 283, 290, 504, 575, 601, 795, 850, 1168
SspMI CTAG 3 cut(s) 180, 534, 884
StyD4I CCNGG 4 cut(s) 162, 357, 930, 1134
StyI CCWWGG 3 cut(s) 90, 863, 1159
TaaI ACNGT 6 cut(s) 203, 222, 459, 628, 1047, 1123
TaiI ACGT 1 cut(s) 981
TaqI TCGA 2 cut(s) 516, 1028
TasI AATT 8 cut(s) 283, 290, 504, 575, 601, 795, 850, 1168
TfiI GAWTC 2 cut(s) 560, 1025
Tru1I TTAA 2 cut(s) 282, 293
Tru9I TTAA 2 cut(s) 282, 293
TscAI CASTG 4 cut(s) 400, 964, 994, 1038
TseI GCWGC 3 cut(s) 230, 233, 935
TspDTI ATGAA 6 cut(s) 87, 303, 332, 573, 588, 884
TspGWI ACGGA 2 cut(s) 101, 209
TspRI CASTG 4 cut(s) 400, 964, 994, 1038
Tth111I GACNNNGTC 1 cut(s) 980
VpaK11BI GGWCC 2 cut(s) 452, 538
XapI RAATTY 3 cut(s) 504, 575, 850
XbaI TCTAGA 1 cut(s) 883
XceI RCATGY 1 cut(s) 1041
XmnI GAANNNNTTC 2 cut(s) 504, 771
XspI CTAG 3 cut(s) 180, 534, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.