Rmu_sc0002094.1_g000004

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002094.1
OG0000419
Physical Location & Seq
Reverse (-)
22156 .. 24201
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002094.1_g000004.1.cds

Sequence Viewer

Length: 534 bp
atgcttcgactgaagtgcagatctactcctccagaatggatccagaaggcaaacggtgaagttgaatatattcctccttatcattatgtaagaattattcaaaggaaatatcttcaaccagcctgtgtagggtacaatggacaaccaaacccaagcatcccgtggatgaaggccatgactctagaatatatcaagaagatcatctctgaagacatccacaataccttcctggcagcaggagaaaaaattattatcactgcctacgatcatcctgacgtagtcagcagtgacttgttcctatctcttaccagaaaagagatagattcgacactggcatgcttacgatgggtggagaagcttgaaacagacaaccactacaagatgtatgttgatacagatgtcgaagataatgcaacaacagtaaggatggcccaggcagataacgactcccggtaccaaagccacttgaacttcgactgccgcaccaactccctcaaacacaaaggaacagacactgatctcagcctgttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

177

Amino Acids

20.5

Weight (kDa)

6.06

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 453
AccB1I GGYRCC 1 cut(s) 453
AciI CCGC 1 cut(s) 481
AclWI GGATC 2 cut(s) 34, 47
AcuI CTGAAG 2 cut(s) 32, 228
AfaI GTAC 2 cut(s) 134, 455
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 5 cut(s) 65, 101, 116, 362, 469
AjnI CCWGG 2 cut(s) 228, 432
AluBI AGCT 1 cut(s) 358
AluI AGCT 1 cut(s) 358
AlwI GGATC 2 cut(s) 34, 47
AlwNI CAGNNNCTG 1 cut(s) 515
AoxI GGCC 2 cut(s) 171, 429
ApeKI GCWGC 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 69
Asp718I GGTACC 1 cut(s) 453
AspS9I GGNCC 1 cut(s) 430
AsuC2I CCSGG 1 cut(s) 451
AsuHPI GGTGA 1 cut(s) 68
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 245
BccI CCATC 2 cut(s) 339, 421
BcgI CGANNNNNNTGC 3 cut(s) 31, 392, 426
BciT130I CCWGG 2 cut(s) 230, 434
BcnI CCSGG 1 cut(s) 451
BfaI CTAG 1 cut(s) 182
BglII AGATCT 1 cut(s) 20
BisI GCNGC 2 cut(s) 234, 481
BlsI GCNGC 2 cut(s) 235, 482
Bme1390I CCNGG 3 cut(s) 230, 434, 451
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 2 cut(s) 41, 455
BmrFI CCNGG 3 cut(s) 230, 434, 451
BmsI GCATC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 15
BpuMI CCSGG 1 cut(s) 451
BsaJI CCNNGG 2 cut(s) 161, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 336
BseBI CCWGG 2 cut(s) 230, 434
BseDI CCNNGG 2 cut(s) 161, 432
BseGI GGATG 5 cut(s) 156, 171, 213, 268, 432
BseLI CCNNNNNNNGG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 245
BsgI GTGCAG 1 cut(s) 37
BshFI GGCC 2 cut(s) 173, 431
BshNI GGYRCC 1 cut(s) 453
BsiSI CCGG 1 cut(s) 451
BslI CCNNNNNNNGG 1 cut(s) 129
BsnI GGCC 2 cut(s) 173, 431
Bsp143I GATC 5 cut(s) 20, 39, 198, 265, 517
BspACI CCGC 1 cut(s) 481
BspANI GGCC 2 cut(s) 173, 431
BspCNI CTCAG 1 cut(s) 534
BspLI GGNNCC 2 cut(s) 41, 455
BspPI GGATC 2 cut(s) 34, 47
BspT107I GGYRCC 1 cut(s) 453
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 161, 432
BssMI GATC 5 cut(s) 20, 39, 198, 265, 517
Bst2UI CCWGG 2 cut(s) 230, 434
Bst4CI ACNGT 2 cut(s) 56, 421
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 1 cut(s) 521
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 5 cut(s) 156, 171, 213, 268, 432
BstKTI GATC 5 cut(s) 23, 42, 201, 268, 520
BstMBI GATC 5 cut(s) 20, 39, 198, 265, 517
BstNI CCWGG 2 cut(s) 230, 434
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 3 cut(s) 228, 432, 449
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 2 cut(s) 20, 39
BstYI RGATCY 2 cut(s) 20, 39
BsuRI GGCC 2 cut(s) 173, 431
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 5 cut(s) 156, 171, 213, 268, 432
BtsI GCAGTG 2 cut(s) 255, 292
BtsIMutI CAGTG 4 cut(s) 255, 292, 329, 513
Cac8I GCNNGC 1 cut(s) 337
CaiI CAGNNNCTG 1 cut(s) 515
Cfr13I GGNCC 1 cut(s) 430
Csp6I GTAC 2 cut(s) 133, 454
CviAII CATG 2 cut(s) 175, 336
CviJI RGCY 6 cut(s) 122, 173, 358, 431, 462, 525
CviKI_1 RGCY 6 cut(s) 122, 173, 358, 431, 462, 525
CviQI GTAC 2 cut(s) 133, 454
DdeI CTNAG 1 cut(s) 521
DpnI GATC 5 cut(s) 22, 41, 200, 267, 519
DpnII GATC 5 cut(s) 20, 39, 198, 265, 517
Eco57I CTGAAG 2 cut(s) 32, 228
EcoRII CCWGG 2 cut(s) 228, 432
FaeI CATG 2 cut(s) 178, 339
FaiI YATR 6 cut(s) 69, 87, 176, 189, 337, 387
FatI CATG 2 cut(s) 174, 335
Fnu4HI GCNGC 2 cut(s) 234, 481
FokI GGATG 5 cut(s) 143, 178, 200, 255, 439
Fsp4HI GCNGC 2 cut(s) 234, 481
FspBI CTAG 1 cut(s) 182
GluI GCNGC 2 cut(s) 234, 481
GsuI CTGGAG 1 cut(s) 15
HaeIII GGCC 2 cut(s) 173, 431
HapII CCGG 1 cut(s) 451
Hin1II CATG 2 cut(s) 178, 339
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 3 cut(s) 178, 323, 446
HpaII CCGG 1 cut(s) 451
HphI GGTGA 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 5 cut(s) 32, 43, 182, 193, 272
HpyAV CCTTC 3 cut(s) 40, 163, 235
HpyCH4III ACNGT 2 cut(s) 56, 421
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 18, 413
HpyF3I CTNAG 1 cut(s) 521
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 2 cut(s) 178, 339
KpnI GGTACC 1 cut(s) 457
Kzo9I GATC 5 cut(s) 20, 39, 198, 265, 517
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 287
MalI GATC 5 cut(s) 22, 41, 200, 267, 519
MboI GATC 5 cut(s) 20, 39, 198, 265, 517
MboII GAAGA 4 cut(s) 104, 208, 221, 416
MflI RGATCY 2 cut(s) 20, 39
MluCI AATT 2 cut(s) 93, 246
MlyI GAGTC 2 cut(s) 172, 440
MnlI CCTC 3 cut(s) 39, 84, 503
MroXI GAANNNNTTC 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 334
MspI CCGG 1 cut(s) 451
MspR9I CCNGG 3 cut(s) 230, 434, 451
MvaI CCWGG 2 cut(s) 230, 434
NciI CCSGG 1 cut(s) 451
NdeII GATC 5 cut(s) 20, 39, 198, 265, 517
NlaIII CATG 2 cut(s) 178, 339
NlaIV GGNNCC 2 cut(s) 41, 455
NmuCI GTSAC 1 cut(s) 287
NspI RCATGY 1 cut(s) 339
PaeI GCATGC 1 cut(s) 339
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 323
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 235, 482
PleI GAGTC 2 cut(s) 172, 440
PpsI GAGTC 2 cut(s) 172, 440
Psp6I CCWGG 2 cut(s) 228, 432
PspGI CCWGG 2 cut(s) 228, 432
PspN4I GGNNCC 2 cut(s) 41, 455
PspPI GGNCC 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 515
PsuI RGATCY 2 cut(s) 20, 39
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 2 cut(s) 134, 455
RsaNI GTAC 2 cut(s) 133, 454
RseI CAYNNNNRTG 1 cut(s) 334
SatI GCNGC 2 cut(s) 234, 481
Sau3AI GATC 5 cut(s) 20, 39, 198, 265, 517
Sau96I GGNCC 1 cut(s) 430
SchI GAGTC 2 cut(s) 172, 440
ScrFI CCNGG 3 cut(s) 230, 434, 451
SetI ASST 3 cut(s) 227, 279, 360
SfaNI GCATC 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 334
SphI GCATGC 1 cut(s) 339
Sse9I AATT 2 cut(s) 93, 246
SsiI CCGC 1 cut(s) 481
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 3 cut(s) 228, 432, 449
TaaI ACNGT 2 cut(s) 56, 421
TaiI ACGT 1 cut(s) 279
TaqI TCGA 4 cut(s) 7, 326, 402, 474
TasI AATT 2 cut(s) 93, 246
TauI GCSGC 1 cut(s) 483
TfiI GAWTC 1 cut(s) 323
TscAI CASTG 4 cut(s) 262, 292, 336, 520
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 4 cut(s) 262, 292, 336, 520
Tth111I GACNNNGTC 1 cut(s) 278
XbaI TCTAGA 1 cut(s) 181
XceI RCATGY 1 cut(s) 339
XcmI CCANNNNNNNNNTGG 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.