Rmu_sc0005439.1_g000003

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005439.1
OG0000419
Physical Location & Seq
Reverse (-)
10142 .. 11051
910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005439.1_g000003.1.cds

Sequence Viewer

Length: 840 bp
atgtttccagctctctttgcattagctgaagaactctacgaaaatggtaggccacagtttgaagagcttcatacacagcatagtgctgtaaagaaaaaaaaaattcacttccttgaaagtccagaaagtgttagggtcccgatcatggcactcaatgaatcagactggcatgaattccatagtctaataggaagtcataattctgaagaccgagttcctccaactctctttatcattgcaggacgttatgttgggagatacttagtcaatgttcagagtgaacaccctcaagaacacaagatttggcttgttgaaaatggttttgtccataatctgtggactaaaacaaatgatgatcttaaaggtttatccactcctccagaatggatccaaaaggcaaacggtgaagttgaatatattcctccatatcattatgtgagaattatccaaaagaagtatcttcaaccagcctgtgttgggtacaatggccaaccaaattcaagcatcccatggatgaaagccatgactttagaatacatcaagaagatcatctctgaagatatccacaatacattcctggcagcaggagagaaaactattatcactgcttacgatcatcctgacgtagtcagcagtgacctgttcctatctcttaccaaaaaagagatagattcgacactggcatgcttacagtgggtggaaaggcttgaaactgacaaccactacaaggtgtatgttaatacagatgtcgaagataatgctaccactgttagaatggcccaggcagacaacaactcctttgtctttggccacaatttagaaacggatgagaatatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

279

Amino Acids

32.17

Weight (kDa)

5.42

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 382, 395
AcoI YGGCCR 2 cut(s) 487, 808
AcsI RAATTY 3 cut(s) 102, 173, 496
AcuI CTGAAG 3 cut(s) 48, 225, 576
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 3 cut(s) 145, 477, 727
AgsI TTSAA 7 cut(s) 62, 116, 314, 413, 464, 501, 710
AjnI CCWGG 2 cut(s) 576, 780
AluBI AGCT 3 cut(s) 11, 26, 67
AluI AGCT 3 cut(s) 11, 26, 67
AlwI GGATC 2 cut(s) 382, 395
AoxI GGCC 4 cut(s) 50, 487, 777, 808
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 3 cut(s) 102, 173, 496
Asp700I GAANNNNTTC 2 cut(s) 66, 417
AspS9I GGNCC 2 cut(s) 136, 778
AsuHPI GGTGA 1 cut(s) 416
AvaII GGWCC 1 cut(s) 136
BalI TGGCCA 2 cut(s) 489, 810
BamHI GGATCC 1 cut(s) 387
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 593
BcgI CGANNNNNNTGC 2 cut(s) 740, 774
BciT130I CCWGG 2 cut(s) 578, 782
BisI GCNGC 1 cut(s) 582
BlsI GCNGC 1 cut(s) 583
Bme1390I CCNGG 2 cut(s) 578, 782
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 136, 778
BmiI GGNNCC 3 cut(s) 137, 138, 389
BmrFI CCNGG 2 cut(s) 578, 782
BmsI GCATC 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 509, 780
BsaXI ACNNNNNCTCC 2 cut(s) 779, 809
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 477, 727
Bse1I ACTGG 2 cut(s) 170, 684
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 2 cut(s) 578, 782
BseDI CCNNGG 2 cut(s) 509, 780
BseGI GGATG 4 cut(s) 504, 519, 616, 832
BseLI CCNNNNNNNGG 3 cut(s) 145, 477, 727
BseMI GCAATG 1 cut(s) 234
BseNI ACTGG 2 cut(s) 170, 684
BseRI GAGGAG 1 cut(s) 366
BseXI GCAGC 1 cut(s) 593
BshFI GGCC 4 cut(s) 52, 489, 779, 810
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 3 cut(s) 145, 477, 727
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 4 cut(s) 52, 489, 779, 810
Bsp143I GATC 5 cut(s) 141, 355, 387, 546, 613
Bsp19I CCATGG 1 cut(s) 509
BspANI GGCC 4 cut(s) 52, 489, 779, 810
BspLI GGNNCC 3 cut(s) 137, 138, 389
BspPI GGATC 2 cut(s) 382, 395
BspQI GCTCTTC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 2 cut(s) 170, 684
BssECI CCNNGG 2 cut(s) 509, 780
BssMI GATC 5 cut(s) 141, 355, 387, 546, 613
BssT1I CCWWGG 1 cut(s) 509
Bst2UI CCWGG 2 cut(s) 578, 782
Bst4CI ACNGT 4 cut(s) 57, 404, 693, 769
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 685
BstDEI CTNAG 1 cut(s) 262
BstDSI CCRYGG 1 cut(s) 509
BstF5I GGATG 4 cut(s) 504, 519, 616, 832
BstKTI GATC 5 cut(s) 144, 358, 390, 549, 616
BstMBI GATC 5 cut(s) 141, 355, 387, 546, 613
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 2 cut(s) 578, 782
BstNSI RCATGY 1 cut(s) 687
BstSCI CCNGG 2 cut(s) 576, 780
BstV1I GCAGC 1 cut(s) 593
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 387
BstYI RGATCY 1 cut(s) 387
BsuRI GGCC 4 cut(s) 52, 489, 779, 810
BtgI CCRYGG 1 cut(s) 509
BtsCI GGATG 4 cut(s) 504, 519, 616, 832
BtsI GCAGTG 2 cut(s) 603, 640
BtsIMutI CAGTG 5 cut(s) 603, 640, 677, 698, 765
Cac8I GCNNGC 1 cut(s) 685
Cfr13I GGNCC 2 cut(s) 136, 778
Csp6I GTAC 1 cut(s) 481
CviAII CATG 5 cut(s) 145, 170, 510, 523, 684
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 1 cut(s) 262
DpnI GATC 5 cut(s) 143, 357, 389, 548, 615
DpnII GATC 5 cut(s) 141, 355, 387, 546, 613
EaeI YGGCCR 2 cut(s) 487, 808
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 509
Eco32I GATATC 1 cut(s) 562
Eco47I GGWCC 1 cut(s) 136
Eco57I CTGAAG 3 cut(s) 48, 225, 576
EcoO109I RGGNCCY 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 576, 780
EcoRV GATATC 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 509
ErhI CCWWGG 1 cut(s) 509
FaeI CATG 5 cut(s) 148, 173, 513, 526, 687
FaqI GGGAC 1 cut(s) 122
FatI CATG 5 cut(s) 144, 169, 509, 522, 683
Fnu4HI GCNGC 1 cut(s) 582
FokI GGATG 3 cut(s) 491, 526, 603
Fsp4HI GCNGC 1 cut(s) 582
GluI GCNGC 1 cut(s) 582
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 4 cut(s) 52, 489, 779, 810
Hin1II CATG 5 cut(s) 148, 173, 513, 526, 687
HinfI GANTC 2 cut(s) 158, 671
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 2 cut(s) 281, 339
Hpy188I TCNGA 4 cut(s) 163, 205, 276, 556
Hpy188III TCNNGA 6 cut(s) 122, 139, 290, 380, 541, 620
Hpy8I GTNNAC 2 cut(s) 281, 339
HpyCH4III ACNGT 4 cut(s) 57, 404, 693, 769
HpyCH4IV ACGT 2 cut(s) 244, 624
HpyCH4V TGCA 2 cut(s) 20, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 262
HpySE526I ACGT 2 cut(s) 244, 624
Hsp92II CATG 5 cut(s) 148, 173, 513, 526, 687
KflI GGGWCCC 1 cut(s) 136
Kzo9I GATC 5 cut(s) 141, 355, 387, 546, 613
LguI GCTCTTC 1 cut(s) 57
Lsp1109I GCAGC 1 cut(s) 593
LweI GCATC 1 cut(s) 513
MaeII ACGT 2 cut(s) 244, 624
MaeIII GTNAC 1 cut(s) 635
MalI GATC 5 cut(s) 143, 357, 389, 548, 615
MboI GATC 5 cut(s) 141, 355, 387, 546, 613
MboII GAAGA 7 cut(s) 41, 74, 218, 452, 556, 569, 764
MflI RGATCY 1 cut(s) 387
MlsI TGGCCA 2 cut(s) 489, 810
MluCI AATT 6 cut(s) 102, 173, 199, 441, 496, 814
MluNI TGGCCA 2 cut(s) 489, 810
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 4 cut(s) 228, 297, 387, 432
Mox20I TGGCCA 2 cut(s) 489, 810
MroXI GAANNNNTTC 2 cut(s) 66, 417
MscI TGGCCA 2 cut(s) 489, 810
MseI TTAA 2 cut(s) 360, 738
MslI CAYNNNNRTG 1 cut(s) 682
Msp20I TGGCCA 2 cut(s) 489, 810
MspR9I CCNGG 2 cut(s) 578, 782
MvaI CCWGG 2 cut(s) 578, 782
MwoI GCNNNNNNNGC 1 cut(s) 17
NcoI CCATGG 1 cut(s) 509
NdeII GATC 5 cut(s) 141, 355, 387, 546, 613
NlaIII CATG 5 cut(s) 148, 173, 513, 526, 687
NlaIV GGNNCC 3 cut(s) 137, 138, 389
NmuCI GTSAC 1 cut(s) 635
NspI RCATGY 1 cut(s) 687
PaeI GCATGC 1 cut(s) 687
PciSI GCTCTTC 1 cut(s) 57
PdmI GAANNNNTTC 2 cut(s) 66, 417
PfeI GAWTC 2 cut(s) 158, 671
PflFI GACNNNGTC 1 cut(s) 626
PkrI GCNGC 1 cut(s) 583
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 576, 780
PspGI CCWGG 2 cut(s) 576, 780
PspN4I GGNNCC 3 cut(s) 137, 138, 389
PspPI GGNCC 2 cut(s) 136, 778
PspPPI RGGWCCY 1 cut(s) 136
PsuI RGATCY 1 cut(s) 387
PsyI GACNNNGTC 1 cut(s) 626
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 682
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 360, 738
SatI GCNGC 1 cut(s) 582
Sau3AI GATC 5 cut(s) 141, 355, 387, 546, 613
Sau96I GGNCC 2 cut(s) 136, 778
ScrFI CCNGG 2 cut(s) 578, 782
SetI ASST 8 cut(s) 13, 28, 69, 247, 367, 627, 642, 732
SfaNI GCATC 1 cut(s) 513
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 682
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
SphI GCATGC 1 cut(s) 687
Sse9I AATT 6 cut(s) 102, 173, 199, 441, 496, 814
StyD4I CCNGG 2 cut(s) 576, 780
StyI CCWWGG 1 cut(s) 509
TaaI ACNGT 4 cut(s) 57, 404, 693, 769
TaiI ACGT 2 cut(s) 247, 627
TaqI TCGA 2 cut(s) 674, 750
TaqII GACCGA 1 cut(s) 225
TasI AATT 6 cut(s) 102, 173, 199, 441, 496, 814
TfiI GAWTC 2 cut(s) 158, 671
Tru1I TTAA 2 cut(s) 360, 738
Tru9I TTAA 2 cut(s) 360, 738
TscAI CASTG 5 cut(s) 610, 640, 684, 698, 772
TseFI GTSAC 1 cut(s) 635
TseI GCWGC 1 cut(s) 581
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 4 cut(s) 59, 171, 186, 530
TspGWI ACGGA 1 cut(s) 839
TspRI CASTG 5 cut(s) 610, 640, 684, 698, 772
Tth111I GACNNNGTC 1 cut(s) 626
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 3 cut(s) 102, 173, 496
XceI RCATGY 1 cut(s) 687
XcmI CCANNNNNNNNNTGG 1 cut(s) 772
XmnI GAANNNNTTC 2 cut(s) 66, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.