Rmu_sc0008681.1_g000001

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008681.1
OG0000419
Physical Location & Seq
Reverse (-)
1012 .. 1461
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008681.1_g000001.1.cds

Sequence Viewer

Length: 450 bp
atgaagacaaatggggaagttgaatacatttctccatatcattttgtgagaattattcaaagaagatatcttcagcccgcttgtgttggatacaatggccagcctaattcaagcattccatggatgaaggccatgtccctggaatatatcaagaagatcttctctgaagatacaaagaataccttcctagcagcaggagaaaagacaattatcactgcttacgatcatcctgacgtcgtcagtagtgacattttcctatctctcacaagaaaggagatagattcaacactggcatgcttacagtgggttgaaaagcttgaaacagacaaccactacaagatgtatgttgatacagatgtcgaagataatgcaacaaccacttgcatggcccaggcagataacaactcatttgtccttggccacaattcagaaacagacgagaatatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

149

Amino Acids

17.05

Weight (kDa)

4.78

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 237
AciI CCGC 1 cut(s) 78
AcoI YGGCCR 2 cut(s) 97, 418
AcuI CTGAAG 2 cut(s) 56, 186
AcyI GRCGYC 1 cut(s) 234
AgsI TTSAA 6 cut(s) 23, 59, 111, 285, 311, 320
AjnI CCWGG 2 cut(s) 138, 390
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
AoxI GGCC 4 cut(s) 97, 129, 387, 418
ApeKI GCWGC 1 cut(s) 191
Asp700I GAANNNNTTC 2 cut(s) 158, 182
AspS9I GGNCC 1 cut(s) 388
BaeI ACNNNNGTAYC 2 cut(s) 342, 375
BalI TGGCCA 2 cut(s) 99, 420
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 203
BcgI CGANNNNNNTGC 2 cut(s) 350, 384
BciT130I CCWGG 2 cut(s) 140, 392
BciVI GTATCC 1 cut(s) 83
BfaI CTAG 1 cut(s) 188
BfuI GTATCC 1 cut(s) 83
BglII AGATCT 1 cut(s) 156
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 140, 392
BmgT120I GGNCC 1 cut(s) 388
BmrFI CCNGG 2 cut(s) 140, 392
BpiI GAAGAC 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 4 cut(s) 119, 138, 390, 415
Bse1I ACTGG 1 cut(s) 294
BseBI CCWGG 2 cut(s) 140, 392
BseDI CCNNGG 4 cut(s) 119, 138, 390, 415
BseGI GGATG 2 cut(s) 129, 226
BseNI ACTGG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 203
BshFI GGCC 4 cut(s) 99, 131, 389, 420
BslFI GGGAC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 121
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 4 cut(s) 99, 131, 389, 420
Bsp143I GATC 2 cut(s) 156, 223
Bsp19I CCATGG 1 cut(s) 119
BspACI CCGC 1 cut(s) 78
BspANI GGCC 4 cut(s) 99, 131, 389, 420
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 4 cut(s) 119, 138, 390, 415
BssMI GATC 2 cut(s) 156, 223
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 2 cut(s) 119, 415
Bst2UI CCWGG 2 cut(s) 140, 392
Bst4CI ACNGT 1 cut(s) 303
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 3 cut(s) 78, 101, 295
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 129, 226
BstKTI GATC 2 cut(s) 159, 226
BstMBI GATC 2 cut(s) 156, 223
BstNI CCWGG 2 cut(s) 140, 392
BstNSI RCATGY 1 cut(s) 297
BstSCI CCNGG 2 cut(s) 138, 390
BstV1I GCAGC 1 cut(s) 203
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 156
BstXI CCANNNNNNTGG 2 cut(s) 139, 385
BstYI RGATCY 1 cut(s) 156
BsuI GTATCC 1 cut(s) 83
BsuRI GGCC 4 cut(s) 99, 131, 389, 420
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 2 cut(s) 129, 226
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 3 cut(s) 213, 287, 308
Cac8I GCNNGC 3 cut(s) 78, 101, 295
Cfr13I GGNCC 1 cut(s) 388
CviAII CATG 4 cut(s) 120, 133, 294, 385
CviJI RGCY 7 cut(s) 76, 99, 103, 131, 316, 389, 420
CviKI_1 RGCY 7 cut(s) 76, 99, 103, 131, 316, 389, 420
DpnI GATC 2 cut(s) 158, 225
DpnII GATC 2 cut(s) 156, 223
EaeI YGGCCR 2 cut(s) 97, 418
Eco130I CCWWGG 2 cut(s) 119, 415
Eco32I GATATC 1 cut(s) 68
Eco57I CTGAAG 2 cut(s) 56, 186
EcoRII CCWGG 2 cut(s) 138, 390
EcoRV GATATC 1 cut(s) 68
EcoT14I CCWWGG 2 cut(s) 119, 415
ErhI CCWWGG 2 cut(s) 119, 415
FaeI CATG 4 cut(s) 123, 136, 297, 388
FaiI YATR 8 cut(s) 37, 121, 134, 147, 295, 345, 386, 446
FalI AAGNNNNNCTT 4 cut(s) 143, 175, 167, 199
FaqI GGGAC 1 cut(s) 121
FatI CATG 4 cut(s) 119, 132, 293, 384
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 2 cut(s) 136, 213
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 1 cut(s) 188
GluI GCNGC 1 cut(s) 192
HaeIII GGCC 4 cut(s) 99, 131, 389, 420
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 4 cut(s) 123, 136, 297, 388
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 166, 430
Hpy188III TCNNGA 2 cut(s) 151, 230
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 121, 193
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 371, 384
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 4 cut(s) 123, 136, 297, 388
Kzo9I GATC 2 cut(s) 156, 223
LpnPI CCDG 8 cut(s) 113, 125, 152, 180, 243, 275, 377, 404
Lsp1109I GCAGC 1 cut(s) 203
MaeI CTAG 1 cut(s) 188
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 245
MalI GATC 2 cut(s) 158, 225
MboI GATC 2 cut(s) 156, 223
MboII GAAGA 7 cut(s) 16, 62, 75, 151, 166, 179, 374
MflI RGATCY 1 cut(s) 156
MlsI TGGCCA 2 cut(s) 99, 420
MluCI AATT 4 cut(s) 51, 106, 207, 424
MluNI TGGCCA 2 cut(s) 99, 420
MmeI TCCRAC 1 cut(s) 67
Mox20I TGGCCA 2 cut(s) 99, 420
MroXI GAANNNNTTC 2 cut(s) 158, 182
MscI TGGCCA 2 cut(s) 99, 420
MslI CAYNNNNRTG 2 cut(s) 292, 383
Msp20I TGGCCA 2 cut(s) 99, 420
MspR9I CCNGG 2 cut(s) 140, 392
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 2 cut(s) 140, 392
NcoI CCATGG 1 cut(s) 119
NdeII GATC 2 cut(s) 156, 223
NlaIII CATG 4 cut(s) 123, 136, 297, 388
NmuCI GTSAC 1 cut(s) 245
NspI RCATGY 1 cut(s) 297
PaeI GCATGC 1 cut(s) 297
PctI GAATGC 1 cut(s) 114
PdmI GAANNNNTTC 2 cut(s) 158, 182
PfeI GAWTC 1 cut(s) 281
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 138, 390
PspGI CCWGG 2 cut(s) 138, 390
PspPI GGNCC 1 cut(s) 388
PsuI RGATCY 1 cut(s) 156
PsyI GACNNNGTC 1 cut(s) 236
RseI CAYNNNNRTG 2 cut(s) 292, 383
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 2 cut(s) 156, 223
Sau96I GGNCC 1 cut(s) 388
ScrFI CCNGG 2 cut(s) 140, 392
SetI ASST 3 cut(s) 185, 237, 318
SmiMI CAYNNNNRTG 2 cut(s) 292, 383
SphI GCATGC 1 cut(s) 297
Sse9I AATT 4 cut(s) 51, 106, 207, 424
SsiI CCGC 1 cut(s) 78
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 138, 390
StyI CCWWGG 2 cut(s) 119, 415
TaaI ACNGT 1 cut(s) 303
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 360
TasI AATT 4 cut(s) 51, 106, 207, 424
TfiI GAWTC 1 cut(s) 281
TscAI CASTG 3 cut(s) 220, 294, 308
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 17, 140
TspRI CASTG 3 cut(s) 220, 294, 308
Tth111I GACNNNGTC 1 cut(s) 236
XceI RCATGY 1 cut(s) 297
XmnI GAANNNNTTC 2 cut(s) 158, 182
XspI CTAG 1 cut(s) 188
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.