Rmu_sc0001122.1_g000010

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001122.1
OG0000419
Physical Location & Seq
Forward (+)
45855 .. 47646
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001122.1_g000010.1.cds

Sequence Viewer

Length: 1329 bp
atgacgacgaaggtcgtaatcccagaagcagaagaactgggaaagaacatgagcctgaagaggatcccatggaaaccaaagaaaaaaatcctcaaaaggtttctgctaagtcctaaaggactagccacaactgatcaatcccagggtaaaggattggctagcccgtctcaaacggcagacgacagtaaaggctcatcaagaccgttgaaggctgttgctttgccaaaaagcaaaccaactccaactggagttataaatgtttttaattatgaattaagaacctttgatgctcttgtgttcagaactagtaggagactagcttatcaccagaaagcaatcttggataatctcttttttgcttttcaagaaagaagcagtggtctaatgtttccagcactctttgcacttgctgaggaactttatgaaaatggtagaccacagtttgaagaacctcatacacagcagagaccatatgttggaagatacttagtcaatgttcagagtgaacatcctcaagaacacaagctttggcttgttgaaaatggttttgtccataatctgtggactaaaacaaatgatgatcttaaaggtttgcctcctatcattatcaacacagtcaaaaaagttagaaaaaatgactgtatgcttcgtctgaagttcagatccactcatctagaatggatccagaaggcaaacggtgaggttgagtatatttctccatatcactatgtgagaattattcaaaggaaatatctgcaacccgcctgtgttgggtacaatggacaaccaaactcaagcatcccatggatgaaggccatggccctagaatacatcaaaaagatcatctatgaagatatcaacaataccttcctggcagcaggagaaaaaacaattatcactgcttacgatcatcctgacgtagtcagcagtgacctgttcctatctcttaccagaaaagagatagattcgacactggcatgcttacagtgggttgaaaagctagaaacagacaaccactacaagatgtatgttgatacagatgtcgaagacaatgcaacaactgctcgaatggcccaggcaaataacgactcgtttgtccttggtcacaattcagaaacagacgagaacatgaatctgcttttccccgtccgacctccaccagcaggagcactatgcttacagtgggtggacagacttgaaacagacaaccactacaagatgtatgttgatacagatgtcgaagacaatgcaacaactgctcgaatggcccaggcaaataacgactcgtttgtccttggtcacaattcagaaacagacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

442

Amino Acids

50.54

Weight (kDa)

6.65

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 254
AasI GACNNNNNNGTC 2 cut(s) 1094, 1289
AccB7I CCANNNNNTGG 1 cut(s) 476
AccI GTMKAC 1 cut(s) 433
AciI CCGC 1 cut(s) 762
AclWI GGATC 5 cut(s) 58, 71, 657, 676, 689
AcuI CTGAAG 2 cut(s) 77, 674
AdeI CACNNNGTG 1 cut(s) 730
AfaI GTAC 1 cut(s) 776
AfiI CCNNNNNNNGG 3 cut(s) 476, 771, 1163
AflIII ACRYGT 1 cut(s) 1323
AgsI TTSAA 7 cut(s) 208, 365, 446, 539, 743, 995, 1199
AhlI ACTAGT 1 cut(s) 305
AjnI CCWGG 4 cut(s) 141, 870, 1074, 1269
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AluBI AGCT 3 cut(s) 320, 526, 1000
AluI AGCT 3 cut(s) 320, 526, 1000
Alw21I GWGCWC 1 cut(s) 1171
Alw26I GTCTC 3 cut(s) 171, 307, 460
AlwI GGATC 5 cut(s) 58, 71, 657, 676, 689
AoxI GGCC 4 cut(s) 813, 819, 1071, 1266
ApeKI GCWGC 1 cut(s) 875
AspS9I GGNCC 3 cut(s) 820, 1072, 1267
AsuHPI GGTGA 2 cut(s) 317, 710
AsuNHI GCTAGC 1 cut(s) 158
BaeI ACNNNNGTAYC 4 cut(s) 1026, 1059, 1221, 1254
BamHI GGATCC 2 cut(s) 63, 681
BbsI GAAGAC 2 cut(s) 1053, 1248
Bbv12I GWGCWC 1 cut(s) 1171
BbvCI CCTCAGC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 887
BceAI ACGGC 1 cut(s) 189
BcgI CGANNNNNNTGC 4 cut(s) 1034, 1068, 1229, 1263
BciT130I CCWGG 4 cut(s) 143, 872, 1076, 1271
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 3 cut(s) 171, 307, 460
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 7 cut(s) 122, 159, 306, 317, 674, 824, 1001
BisI GCNGC 1 cut(s) 876
BlsI GCNGC 1 cut(s) 877
Bme1390I CCNGG 4 cut(s) 143, 872, 1076, 1271
BmgT120I GGNCC 3 cut(s) 820, 1072, 1267
BmiI GGNNCC 2 cut(s) 65, 683
BmrFI CCNGG 4 cut(s) 143, 872, 1076, 1271
BmrI ACTGGG 1 cut(s) 47
BmsI GCATC 2 cut(s) 277, 807
BmtI GCTAGC 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 47
BoxI GACNNNNGTC 1 cut(s) 11
BpiI GAAGAC 2 cut(s) 1053, 1248
BpmI CTGGAG 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 411
BpuEI CTTGAG 2 cut(s) 498, 778
BsaI GGTCTC 1 cut(s) 460
BsaJI CCNNGG 9 cut(s) 68, 141, 142, 803, 816, 1074, 1099, 1269, 1294
Bsc4I CCNNNNNNNGG 3 cut(s) 476, 771, 1163
Bse1I ACTGG 3 cut(s) 42, 250, 978
BseBI CCWGG 4 cut(s) 143, 872, 1076, 1271
BseDI CCNNGG 9 cut(s) 68, 141, 142, 803, 816, 1074, 1099, 1269, 1294
BseGI GGATG 4 cut(s) 508, 798, 813, 910
BseLI CCNNNNNNNGG 3 cut(s) 476, 771, 1163
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 3 cut(s) 42, 250, 978
BseXI GCAGC 1 cut(s) 887
BshFI GGCC 4 cut(s) 815, 821, 1073, 1268
BsiHKAI GWGCWC 1 cut(s) 1171
BslI CCNNNNNNNGG 3 cut(s) 476, 771, 1163
BsmAI GTCTC 3 cut(s) 171, 307, 460
BsmBI CGTCTC 1 cut(s) 171
BsnI GGCC 4 cut(s) 815, 821, 1073, 1268
Bso31I GGTCTC 1 cut(s) 460
Bsp1286I GDGCHC 1 cut(s) 1171
Bsp143I GATC 7 cut(s) 63, 133, 580, 662, 681, 840, 907
Bsp19I CCATGG 3 cut(s) 68, 803, 816
BspACI CCGC 1 cut(s) 762
BspANI GGCC 4 cut(s) 815, 821, 1073, 1268
BspCNI CTCAG 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 65, 683
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 5 cut(s) 58, 71, 657, 676, 689
BspTNI GGTCTC 1 cut(s) 460
BsrI ACTGG 3 cut(s) 42, 250, 978
BssECI CCNNGG 9 cut(s) 68, 141, 142, 803, 816, 1074, 1099, 1269, 1294
BssMI GATC 7 cut(s) 63, 133, 580, 662, 681, 840, 907
BssT1I CCWWGG 5 cut(s) 68, 803, 816, 1099, 1294
Bst2UI CCWGG 4 cut(s) 143, 872, 1076, 1271
Bst4CI ACNGT 8 cut(s) 185, 204, 441, 616, 641, 698, 987, 1182
Bst6I CTCTTC 1 cut(s) 53
BstAPI GCANNNNNTGC 3 cut(s) 401, 1061, 1256
BstC8I GCNNGC 2 cut(s) 160, 979
BstDEI CTNAG 3 cut(s) 107, 411, 487
BstDSI CCRYGG 3 cut(s) 68, 803, 816
BstF5I GGATG 4 cut(s) 508, 798, 813, 910
BstKTI GATC 7 cut(s) 66, 136, 583, 665, 684, 843, 910
BstMAI GTCTC 3 cut(s) 171, 307, 460
BstMBI GATC 7 cut(s) 63, 133, 580, 662, 681, 840, 907
BstMWI GCNNNNNNNGC 5 cut(s) 401, 1061, 1070, 1256, 1265
BstNI CCWGG 4 cut(s) 143, 872, 1076, 1271
BstNSI RCATGY 2 cut(s) 981, 1327
BstPAI GACNNNNGTC 1 cut(s) 11
BstSCI CCNGG 4 cut(s) 141, 870, 1074, 1269
BstV1I GCAGC 1 cut(s) 887
BstV2I GAAGAC 2 cut(s) 1053, 1248
BstX2I RGATCY 3 cut(s) 63, 662, 681
BstYI RGATCY 3 cut(s) 63, 662, 681
BsuRI GGCC 4 cut(s) 815, 821, 1073, 1268
BtgI CCRYGG 3 cut(s) 68, 803, 816
BtsCI GGATG 4 cut(s) 508, 798, 813, 910
BtsI GCAGTG 3 cut(s) 382, 897, 934
BtsIMutI CAGTG 6 cut(s) 382, 897, 934, 971, 992, 1187
Cac8I GCNNGC 2 cut(s) 160, 979
Cfr13I GGNCC 3 cut(s) 820, 1072, 1267
Csp6I GTAC 1 cut(s) 775
CviAII CATG 7 cut(s) 49, 69, 804, 817, 978, 1129, 1324
CviQI GTAC 1 cut(s) 775
DdeI CTNAG 3 cut(s) 107, 411, 487
DpnI GATC 7 cut(s) 65, 135, 582, 664, 683, 842, 909
DpnII GATC 7 cut(s) 63, 133, 580, 662, 681, 840, 907
DraIII CACNNNGTG 1 cut(s) 730
DrdI GACNNNNNNGTC 2 cut(s) 1094, 1289
DseDI GACNNNNNNGTC 2 cut(s) 1094, 1289
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 5 cut(s) 68, 803, 816, 1099, 1294
Eco31I GGTCTC 1 cut(s) 460
Eco32I GATATC 1 cut(s) 856
Eco57I CTGAAG 2 cut(s) 77, 674
EcoRII CCWGG 4 cut(s) 141, 870, 1074, 1269
EcoRV GATATC 1 cut(s) 856
EcoT14I CCWWGG 5 cut(s) 68, 803, 816, 1099, 1294
ErhI CCWWGG 5 cut(s) 68, 803, 816, 1099, 1294
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 7 cut(s) 52, 72, 807, 820, 981, 1132, 1327
FatI CATG 7 cut(s) 48, 68, 803, 816, 977, 1128, 1323
FauI CCCGC 1 cut(s) 769
FauNDI CATATG 1 cut(s) 472
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 1 cut(s) 433
Fnu4HI GCNGC 1 cut(s) 876
FokI GGATG 4 cut(s) 495, 785, 820, 897
Fsp4HI GCNGC 1 cut(s) 876
FspBI CTAG 7 cut(s) 122, 159, 306, 317, 674, 824, 1001
GluI GCNGC 1 cut(s) 876
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 4 cut(s) 815, 821, 1073, 1268
Hin1II CATG 7 cut(s) 52, 72, 807, 820, 981, 1132, 1327
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 4 cut(s) 965, 1088, 1132, 1283
HphI GGTGA 2 cut(s) 317, 710
Hpy166II GTNNAC 4 cut(s) 434, 506, 564, 1189
Hpy188I TCNGA 7 cut(s) 302, 501, 654, 662, 1114, 1151, 1309
Hpy188III TCNNGA 6 cut(s) 198, 365, 515, 674, 685, 914
Hpy8I GTNNAC 4 cut(s) 434, 506, 564, 1189
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 4, 202, 682, 805, 877
HpyCH4III ACNGT 8 cut(s) 185, 204, 441, 616, 641, 698, 987, 1182
HpyCH4IV ACGT 1 cut(s) 918
HpyCH4V TGCA 4 cut(s) 404, 757, 1055, 1250
HpyF10VI GCNNNNNNNGC 5 cut(s) 401, 1061, 1070, 1256, 1265
HpyF3I CTNAG 3 cut(s) 107, 411, 487
HpySE526I ACGT 1 cut(s) 918
Hsp92II CATG 7 cut(s) 52, 72, 807, 820, 981, 1132, 1327
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 7 cut(s) 63, 133, 580, 662, 681, 840, 907
LmnI GCTCC 1 cut(s) 1166
Lsp1109I GCAGC 1 cut(s) 887
LweI GCATC 2 cut(s) 277, 807
MaeI CTAG 7 cut(s) 122, 159, 306, 317, 674, 824, 1001
MaeII ACGT 1 cut(s) 918
MaeIII GTNAC 3 cut(s) 929, 1103, 1298
MalI GATC 7 cut(s) 65, 135, 582, 664, 683, 842, 909
MboI GATC 7 cut(s) 63, 133, 580, 662, 681, 840, 907
MboII GAAGA 7 cut(s) 44, 70, 458, 492, 863, 1058, 1253
MflI RGATCY 3 cut(s) 63, 662, 681
MhlI GDGCHC 1 cut(s) 1171
MluCI AATT 6 cut(s) 265, 272, 735, 891, 1108, 1303
MlyI GAGTC 2 cut(s) 1082, 1277
MmeI TCCRAC 3 cut(s) 266, 457, 1174
MnlI CCTC 8 cut(s) 54, 101, 406, 462, 522, 606, 694, 1164
MseI TTAA 3 cut(s) 264, 275, 585
MslI CAYNNNNRTG 1 cut(s) 976
MspR9I CCNGG 4 cut(s) 143, 872, 1076, 1271
MvaI CCWGG 4 cut(s) 143, 872, 1076, 1271
MwoI GCNNNNNNNGC 5 cut(s) 401, 1061, 1070, 1256, 1265
NcoI CCATGG 3 cut(s) 68, 803, 816
NdeI CATATG 1 cut(s) 472
NdeII GATC 7 cut(s) 63, 133, 580, 662, 681, 840, 907
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 7 cut(s) 52, 72, 807, 820, 981, 1132, 1327
NlaIV GGNNCC 2 cut(s) 65, 683
NmuCI GTSAC 3 cut(s) 929, 1103, 1298
NspI RCATGY 2 cut(s) 981, 1327
PaeI GCATGC 1 cut(s) 981
PasI CCCWGGG 1 cut(s) 142
PciI ACATGT 1 cut(s) 1323
PfeI GAWTC 2 cut(s) 965, 1132
PflFI GACNNNGTC 1 cut(s) 920
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 1 cut(s) 877
PleI GAGTC 2 cut(s) 1082, 1277
PpsI GAGTC 2 cut(s) 1082, 1277
PscI ACATGT 1 cut(s) 1323
PshAI GACNNNNGTC 1 cut(s) 11
PsiI TTATAA 1 cut(s) 254
Psp6I CCWGG 4 cut(s) 141, 870, 1074, 1269
PspGI CCWGG 4 cut(s) 141, 870, 1074, 1269
PspN4I GGNNCC 2 cut(s) 65, 683
PspPI GGNCC 3 cut(s) 820, 1072, 1267
PsuI RGATCY 3 cut(s) 63, 662, 681
PsyI GACNNNGTC 1 cut(s) 920
RsaI GTAC 1 cut(s) 776
RsaNI GTAC 1 cut(s) 775
RseI CAYNNNNRTG 1 cut(s) 976
SaqAI TTAA 3 cut(s) 264, 275, 585
SatI GCNGC 1 cut(s) 876
Sau3AI GATC 7 cut(s) 63, 133, 580, 662, 681, 840, 907
Sau96I GGNCC 3 cut(s) 820, 1072, 1267
SchI GAGTC 2 cut(s) 1082, 1277
ScrFI CCNGG 4 cut(s) 143, 872, 1076, 1271
SduI GDGCHC 1 cut(s) 1171
SfaNI GCATC 2 cut(s) 277, 807
SmiMI CAYNNNNRTG 1 cut(s) 976
SmlI CTYRAG 2 cut(s) 513, 793
SmoI CTYRAG 2 cut(s) 513, 793
SpeI ACTAGT 1 cut(s) 305
SphI GCATGC 1 cut(s) 981
Sse9I AATT 6 cut(s) 265, 272, 735, 891, 1108, 1303
SsiI CCGC 1 cut(s) 762
SspMI CTAG 7 cut(s) 122, 159, 306, 317, 674, 824, 1001
StyD4I CCNGG 4 cut(s) 141, 870, 1074, 1269
StyI CCWWGG 5 cut(s) 68, 803, 816, 1099, 1294
TaaI ACNGT 8 cut(s) 185, 204, 441, 616, 641, 698, 987, 1182
TaiI ACGT 1 cut(s) 921
TaqI TCGA 5 cut(s) 968, 1044, 1066, 1239, 1261
TasI AATT 6 cut(s) 265, 272, 735, 891, 1108, 1303
TfiI GAWTC 2 cut(s) 965, 1132
Tru1I TTAA 3 cut(s) 264, 275, 585
Tru9I TTAA 3 cut(s) 264, 275, 585
TscAI CASTG 6 cut(s) 382, 904, 934, 978, 992, 1187
TseFI GTSAC 3 cut(s) 929, 1103, 1298
TseI GCWGC 1 cut(s) 875
Tsp45I GTSAC 3 cut(s) 929, 1103, 1298
TspDTI ATGAA 5 cut(s) 285, 438, 824, 864, 1145
TspRI CASTG 6 cut(s) 382, 904, 934, 978, 992, 1187
Tth111I GACNNNGTC 1 cut(s) 920
Van91I CCANNNNNTGG 1 cut(s) 476
XbaI TCTAGA 1 cut(s) 673
XceI RCATGY 2 cut(s) 981, 1327
XmiI GTMKAC 1 cut(s) 433
XspI CTAG 7 cut(s) 122, 159, 306, 317, 674, 824, 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.