Rmu_sc0002706.1_g000004

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002706.1
OG0000419
Physical Location & Seq
Forward (+)
19165 .. 20280
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002706.1_g000004.1.cds

Sequence Viewer

Length: 1041 bp
atggcagacggtaaaggctcatcaagatcatttaaggctattgctttgccaaaaagtaaaacaactccatatgaggttataaatgtttttaattatgaattgaaaaccctagaagaacttgtgtttagaactggcaggagattagcatactaccaaaaggctattttagataatcgtttatatgtttttaaggaaagtaatagtggactcatgttcccagccttgtttgccctacctgaagaacttcatgaaaacgccagaccacagttcgaagaagtttatgaaaatacacagcagagtgttgtccagaatgaaaaaattcaatatcttgaagatcctgaaagtgctaaagttcctgttttagcactaaaagaattagattggtttgactttcataatcttattgggagtcataactctgactcatgtcttcctccaaccctcttcattgtctctagaccttatgttggaagatatgtagttaatgttcagagtgaacatcctcaagaacacaagctctggcttgttgaaaatggttttgtccataatctctggactaaaaccaatgatgatctcaaaagactgccacccattatagtaaacatagtcaagaatgttagaaaaaatgattgcattcttaggttgaagttcatatctactccaccagaatggattcagaagaaaaatggatataatggccaaccaaattctagcatcccctggatgaaggctatgtctttagagtacattaaaaagattatcgaagaagatactgaaaatacattcctggcagcaggagagaaaatcatagtaattgcatatgaccatcctgaggttattagcagtgacctttttctatctctcaagaaaaaggaaatcgattccactttggcctgttttcagtgggtcgaaaaaattgaaaatgacaaccactgcaagatgtatgaagatacaggtgtagaggaaaatagaaccaaagctatgatggaaagcaactcttttgtccttggtcacaattctgaaacagatgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

346

Amino Acids

40.04

Weight (kDa)

5.51

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
AclWI GGATC 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 697
AcsI RAATTY 2 cut(s) 318, 706
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 1 cut(s) 746
AfiI CCNNNNNNNGG 2 cut(s) 467, 832
AflIII ACRYGT 1 cut(s) 1035
AgsI TTSAA 6 cut(s) 103, 323, 332, 530, 646, 920
AjnI CCWGG 2 cut(s) 719, 786
AluBI AGCT 2 cut(s) 517, 980
AluI AGCT 2 cut(s) 517, 980
Alw26I GTCTC 1 cut(s) 457
AlwI GGATC 1 cut(s) 329
AoxI GGCC 2 cut(s) 697, 891
ApeKI GCWGC 1 cut(s) 791
ApoI RAATTY 2 cut(s) 318, 706
Asp700I GAANNNNTTC 3 cut(s) 243, 318, 672
AsuII TTCGAA 1 cut(s) 270
AxyI CCTNAGG 1 cut(s) 831
BaeI ACNNNNGTAYC 2 cut(s) 942, 975
BalI TGGCCA 1 cut(s) 699
BbsI GAAGAC 1 cut(s) 422
BbvI GCAGC 1 cut(s) 803
BccI CCATC 2 cut(s) 834, 979
BciT130I CCWGG 2 cut(s) 721, 788
BcoDI GTCTC 1 cut(s) 457
BfaI CTAG 3 cut(s) 110, 456, 711
BisI GCNGC 1 cut(s) 792
BlsI GCNGC 1 cut(s) 793
Bme1390I CCNGG 2 cut(s) 721, 788
BmrFI CCNGG 2 cut(s) 721, 788
BmsI GCATC 1 cut(s) 723
BoxI GACNNNNGTC 1 cut(s) 426
BpiI GAAGAC 1 cut(s) 422
Bpu14I TTCGAA 1 cut(s) 270
BpuEI CTTGAG 2 cut(s) 489, 848
Bsa29I ATCGAT 1 cut(s) 879
BsaJI CCNNGG 2 cut(s) 719, 1006
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 832
Bse1I ACTGG 1 cut(s) 136
Bse21I CCTNAGG 1 cut(s) 831
BseBI CCWGG 2 cut(s) 721, 788
BseCI ATCGAT 1 cut(s) 879
BseDI CCNNGG 2 cut(s) 719, 1006
BseGI GGATG 4 cut(s) 499, 714, 729, 826
BseLI CCNNNNNNNGG 2 cut(s) 467, 832
BseMII CTCAG 1 cut(s) 822
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 803
BseYI CCCAGC 1 cut(s) 217
BshFI GGCC 2 cut(s) 699, 893
BshVI ATCGAT 1 cut(s) 879
BslI CCNNNNNNNGG 2 cut(s) 467, 832
BsmAI GTCTC 1 cut(s) 457
BsmI GAATGC 1 cut(s) 633
BsnI GGCC 2 cut(s) 699, 893
Bsp119I TTCGAA 1 cut(s) 270
Bsp143I GATC 3 cut(s) 26, 334, 571
BspANI GGCC 2 cut(s) 699, 893
BspCNI CTCAG 1 cut(s) 823
BspDI ATCGAT 1 cut(s) 879
BspHI TCATGA 1 cut(s) 247
BspPI GGATC 1 cut(s) 329
BspT104I TTCGAA 1 cut(s) 270
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 719, 1006
BssMI GATC 3 cut(s) 26, 334, 571
BssT1I CCWWGG 1 cut(s) 1006
Bst2UI CCWGG 2 cut(s) 721, 788
Bst4CI ACNGT 2 cut(s) 11, 267
Bst6I CTCTTC 1 cut(s) 449
BstBI TTCGAA 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 638, 831
BstF5I GGATG 4 cut(s) 499, 714, 729, 826
BstKTI GATC 3 cut(s) 29, 337, 574
BstMAI GTCTC 1 cut(s) 457
BstMBI GATC 3 cut(s) 26, 334, 571
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 2 cut(s) 721, 788
BstNSI RCATGY 1 cut(s) 1039
BstPAI GACNNNNGTC 1 cut(s) 426
BstSCI CCNGG 2 cut(s) 719, 786
BstV1I GCAGC 1 cut(s) 803
BstV2I GAAGAC 1 cut(s) 422
BstX2I RGATCY 1 cut(s) 334
BstXI CCANNNNNNTGG 1 cut(s) 669
BstYI RGATCY 1 cut(s) 334
Bsu15I ATCGAT 1 cut(s) 879
Bsu36I CCTNAGG 1 cut(s) 831
BsuRI GGCC 2 cut(s) 699, 893
BsuTUI ATCGAT 1 cut(s) 879
BtsCI GGATG 4 cut(s) 499, 714, 729, 826
BtsI GCAGTG 2 cut(s) 850, 931
BtsIMutI CAGTG 3 cut(s) 850, 908, 931
CciI TCATGA 1 cut(s) 247
ClaI ATCGAT 1 cut(s) 879
Csp6I GTAC 1 cut(s) 745
CviAII CATG 4 cut(s) 211, 248, 426, 1036
CviQI GTAC 1 cut(s) 745
DdeI CTNAG 2 cut(s) 638, 831
DpnI GATC 3 cut(s) 28, 336, 573
DpnII GATC 3 cut(s) 26, 334, 571
EaeI YGGCCR 1 cut(s) 697
Eam1104I CTCTTC 1 cut(s) 449
EarI CTCTTC 1 cut(s) 449
Eco130I CCWWGG 1 cut(s) 1006
Eco57I CTGAAG 1 cut(s) 258
Eco81I CCTNAGG 1 cut(s) 831
EcoRII CCWGG 2 cut(s) 719, 786
EcoT14I CCWWGG 1 cut(s) 1006
ErhI CCWWGG 1 cut(s) 1006
FaeI CATG 4 cut(s) 214, 251, 429, 1039
FalI AAGNNNNNCTT 2 cut(s) 982, 1014
FatI CATG 4 cut(s) 210, 247, 425, 1035
FauNDI CATATG 2 cut(s) 70, 820
Fnu4HI GCNGC 1 cut(s) 792
FokI GGATG 4 cut(s) 486, 701, 736, 813
Fsp4HI GCNGC 1 cut(s) 792
FspBI CTAG 3 cut(s) 110, 456, 711
GluI GCNGC 1 cut(s) 792
GsaI CCCAGC 1 cut(s) 221
HaeIII GGCC 2 cut(s) 699, 893
Hin1II CATG 4 cut(s) 214, 251, 429, 1039
HinfI GANTC 5 cut(s) 207, 409, 422, 673, 881
Hpy166II GTNNAC 3 cut(s) 206, 497, 601
Hpy188I TCNGA 4 cut(s) 421, 492, 678, 1021
Hpy8I GTNNAC 3 cut(s) 206, 497, 601
HpyAV CCTTC 1 cut(s) 721
HpyCH4III ACNGT 2 cut(s) 11, 267
HpyCH4V TGCA 3 cut(s) 633, 818, 936
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 2 cut(s) 638, 831
Hsp92II CATG 4 cut(s) 214, 251, 429, 1039
Kzo9I GATC 3 cut(s) 26, 334, 571
Lsp1109I GCAGC 1 cut(s) 803
LweI GCATC 1 cut(s) 723
MaeI CTAG 3 cut(s) 110, 456, 711
MaeIII GTNAC 2 cut(s) 845, 1010
MalI GATC 3 cut(s) 28, 336, 573
MboI GATC 3 cut(s) 26, 334, 571
MflI RGATCY 1 cut(s) 334
MlsI TGGCCA 1 cut(s) 699
MluCI AATT 8 cut(s) 91, 98, 318, 374, 706, 813, 915, 1015
MluNI TGGCCA 1 cut(s) 699
MlyI GAGTC 3 cut(s) 201, 416, 418
MmeI TCCRAC 2 cut(s) 448, 461
MnlI CCTC 6 cut(s) 67, 444, 452, 513, 826, 955
Mox20I TGGCCA 1 cut(s) 699
MroXI GAANNNNTTC 3 cut(s) 243, 318, 672
MscI TGGCCA 1 cut(s) 699
MseI TTAA 5 cut(s) 33, 90, 189, 483, 750
MslI CAYNNNNRTG 1 cut(s) 667
Msp20I TGGCCA 1 cut(s) 699
MspR9I CCNGG 2 cut(s) 721, 788
Mva1269I GAATGC 1 cut(s) 633
MvaI CCWGG 2 cut(s) 721, 788
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeI CATATG 2 cut(s) 70, 820
NdeII GATC 3 cut(s) 26, 334, 571
NlaIII CATG 4 cut(s) 214, 251, 429, 1039
NmuCI GTSAC 2 cut(s) 845, 1010
NspI RCATGY 1 cut(s) 1039
NspV TTCGAA 1 cut(s) 270
PagI TCATGA 1 cut(s) 247
PciI ACATGT 1 cut(s) 1035
PctI GAATGC 1 cut(s) 633
PdmI GAANNNNTTC 3 cut(s) 243, 318, 672
PfeI GAWTC 2 cut(s) 673, 881
PkrI GCNGC 1 cut(s) 793
PleI GAGTC 3 cut(s) 201, 416, 417
PpsI GAGTC 3 cut(s) 201, 416, 417
PscI ACATGT 1 cut(s) 1035
PshAI GACNNNNGTC 1 cut(s) 426
PsiI TTATAA 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 719, 786
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 2 cut(s) 719, 786
PsrI GAACNNNNNNTAC 2 cut(s) 471, 503
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 1 cut(s) 746
RsaNI GTAC 1 cut(s) 745
RseI CAYNNNNRTG 1 cut(s) 667
SaqAI TTAA 5 cut(s) 33, 90, 189, 483, 750
SatI GCNGC 1 cut(s) 792
Sau3AI GATC 3 cut(s) 26, 334, 571
SchI GAGTC 3 cut(s) 201, 416, 418
ScrFI CCNGG 2 cut(s) 721, 788
SetI ASST 9 cut(s) 78, 238, 463, 519, 644, 837, 852, 958, 982
SfaNI GCATC 1 cut(s) 723
SfuI TTCGAA 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 667
SmlI CTYRAG 2 cut(s) 504, 863
SmoI CTYRAG 2 cut(s) 504, 863
Sse9I AATT 8 cut(s) 91, 98, 318, 374, 706, 813, 915, 1015
SspMI CTAG 3 cut(s) 110, 456, 711
StyD4I CCNGG 2 cut(s) 719, 786
StyI CCWWGG 1 cut(s) 1006
TaaI ACNGT 2 cut(s) 11, 267
TaqI TCGA 4 cut(s) 270, 762, 879, 909
TasI AATT 8 cut(s) 91, 98, 318, 374, 706, 813, 915, 1015
TatI WGTACW 1 cut(s) 744
TfiI GAWTC 2 cut(s) 673, 881
Tru1I TTAA 5 cut(s) 33, 90, 189, 483, 750
Tru9I TTAA 5 cut(s) 33, 90, 189, 483, 750
TscAI CASTG 3 cut(s) 850, 908, 938
TseFI GTSAC 2 cut(s) 845, 1010
TseI GCWGC 1 cut(s) 791
Tsp45I GTSAC 2 cut(s) 845, 1010
TspRI CASTG 3 cut(s) 850, 908, 938
XapI RAATTY 2 cut(s) 318, 706
XbaI TCTAGA 1 cut(s) 455
XceI RCATGY 1 cut(s) 1039
XcmI CCANNNNNNNNNTGG 1 cut(s) 982
XmnI GAANNNNTTC 3 cut(s) 243, 318, 672
XspI CTAG 3 cut(s) 110, 456, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.