Rmu_sc0006567.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006567.1
OG0000419
Physical Location & Seq
Reverse (-)
55742 .. 56650
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006567.1_g000015.1.cds

Sequence Viewer

Length: 843 bp
atgttcccagctctctttgcactagctgaagaactctatgaaaatgctaggccacaatttgaagaaattcatacacagcagagtgctgtaagaaaagaaaaaattcacttccttgaaagtccagaaagtgctagggtcccgatcatggcactcaatgagtcagactggcttgaattccatagtctgataggaagacataatccagaagacctggttcctccaactctctttattgtttcaggtccttatgttggaagatacctggttaatgttcagagtgaacatcctcaagaacacaagctctggcttgttgaaaatggttttgtccataatctgtggactaaaacaaatgatgatctgaagggtttgccgcctatcattgtcaacacagtcaaaaacattagaaaaaatgactgtatgcttcgtctgaagttcagatctactccttcagaatggatccagaagacaaacggtgaggttaagtatatttctccatatcattatgtgagaattattcaaagaaaatatcttcaaccagcttgtgttggatacaatggccagccaaactcaagcatcccatggatgaaagccatgaccctggagtatatcaaaaagatcatctctgaagatgtcaacaataccttcctggcagcaggagaaaaaactattatcactgcttacgatcatcctgacgtatgggtggaaagacttgaaacagataaccactacaagatgtatgttgatacagacgtcgaagacaatgcaacaactgctcgaatggcccaggcagataacgactcgtttgtccttggtcacaattcagaaactgacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

32.43

Weight (kDa)

5.47

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 803
AatII GACGTC 1 cut(s) 753
AciI CCGC 1 cut(s) 371
AclWI GGATC 2 cut(s) 451, 464
AcoI YGGCCR 1 cut(s) 556
AcsI RAATTY 3 cut(s) 66, 102, 173
AcuI CTGAAG 5 cut(s) 48, 380, 432, 449, 645
AcyI GRCGYC 1 cut(s) 750
AfiI CCNNNNNNNGG 2 cut(s) 145, 251
AflIII ACRYGT 1 cut(s) 837
AgsI TTSAA 7 cut(s) 62, 116, 173, 314, 518, 533, 713
AjnI CCWGG 5 cut(s) 210, 261, 597, 645, 783
AluBI AGCT 4 cut(s) 11, 26, 301, 539
AluI AGCT 4 cut(s) 11, 26, 301, 539
AlwI GGATC 2 cut(s) 451, 464
AlwNI CAGNNNCTG 1 cut(s) 827
AoxI GGCC 3 cut(s) 50, 556, 780
ApeKI GCWGC 1 cut(s) 650
ApoI RAATTY 3 cut(s) 66, 102, 173
Asp700I GAANNNNTTC 2 cut(s) 66, 102
AspS9I GGNCC 3 cut(s) 136, 242, 781
AsuHPI GGTGA 1 cut(s) 485
AvaII GGWCC 2 cut(s) 136, 242
BaeI ACNNNNGTAYC 2 cut(s) 735, 768
BalI TGGCCA 1 cut(s) 558
BamHI GGATCC 1 cut(s) 456
BbsI GAAGAC 4 cut(s) 199, 213, 470, 762
BbvI GCAGC 1 cut(s) 662
BcgI CGANNNNNNTGC 2 cut(s) 743, 777
BciT130I CCWGG 5 cut(s) 212, 263, 599, 647, 785
BciVI GTATCC 1 cut(s) 542
BfaI CTAG 3 cut(s) 23, 48, 132
BfuI GTATCC 1 cut(s) 542
BglII AGATCT 1 cut(s) 437
BisI GCNGC 2 cut(s) 371, 651
BlsI GCNGC 2 cut(s) 372, 652
Bme1390I CCNGG 5 cut(s) 212, 263, 599, 647, 785
Bme18I GGWCC 2 cut(s) 136, 242
BmgT120I GGNCC 3 cut(s) 136, 242, 781
BmiI GGNNCC 4 cut(s) 137, 138, 216, 458
BmrFI CCNGG 5 cut(s) 212, 263, 599, 647, 785
BmsI GCATC 1 cut(s) 582
BpiI GAAGAC 4 cut(s) 199, 213, 470, 762
BpmI CTGGAG 1 cut(s) 620
BpuEI CTTGAG 2 cut(s) 273, 553
BsaHI GRCGYC 1 cut(s) 750
BsaJI CCNNGG 4 cut(s) 578, 597, 783, 808
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 251
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 5 cut(s) 212, 263, 599, 647, 785
BseDI CCNNGG 4 cut(s) 578, 597, 783, 808
BseGI GGATG 4 cut(s) 283, 573, 588, 685
BseLI CCNNNNNNNGG 2 cut(s) 145, 251
BseNI ACTGG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 662
BseYI CCCAGC 1 cut(s) 7
BshFI GGCC 3 cut(s) 52, 558, 782
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 145, 251
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 3 cut(s) 52, 558, 782
Bsp143I GATC 6 cut(s) 141, 355, 437, 456, 615, 682
Bsp19I CCATGG 1 cut(s) 578
BspACI CCGC 1 cut(s) 371
BspANI GGCC 3 cut(s) 52, 558, 782
BspLI GGNNCC 4 cut(s) 137, 138, 216, 458
BspPI GGATC 2 cut(s) 451, 464
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 4 cut(s) 578, 597, 783, 808
BssMI GATC 6 cut(s) 141, 355, 437, 456, 615, 682
BssNI GRCGYC 1 cut(s) 750
BssT1I CCWWGG 2 cut(s) 578, 808
Bst2UI CCWGG 5 cut(s) 212, 263, 599, 647, 785
Bst4CI ACNGT 3 cut(s) 391, 416, 473
BstACI GRCGYC 1 cut(s) 750
BstAPI GCANNNNNTGC 1 cut(s) 770
BstC8I GCNNGC 1 cut(s) 560
BstDSI CCRYGG 1 cut(s) 578
BstF5I GGATG 4 cut(s) 283, 573, 588, 685
BstKTI GATC 6 cut(s) 144, 358, 440, 459, 618, 685
BstMBI GATC 6 cut(s) 141, 355, 437, 456, 615, 682
BstMWI GCNNNNNNNGC 3 cut(s) 17, 770, 779
BstNI CCWGG 5 cut(s) 212, 263, 599, 647, 785
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 5 cut(s) 210, 261, 597, 645, 783
BstV1I GCAGC 1 cut(s) 662
BstV2I GAAGAC 4 cut(s) 199, 213, 470, 762
BstX2I RGATCY 2 cut(s) 437, 456
BstXI CCANNNNNNTGG 1 cut(s) 598
BstYI RGATCY 2 cut(s) 437, 456
BsuI GTATCC 1 cut(s) 542
BsuRI GGCC 3 cut(s) 52, 558, 782
BtgI CCRYGG 1 cut(s) 578
BtsCI GGATG 4 cut(s) 283, 573, 588, 685
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 1 cut(s) 672
Cac8I GCNNGC 1 cut(s) 560
CaiI CAGNNNCTG 1 cut(s) 827
Cfr13I GGNCC 3 cut(s) 136, 242, 781
CsiI ACCWGGT 2 cut(s) 210, 261
CviAII CATG 4 cut(s) 145, 579, 592, 838
DpnI GATC 6 cut(s) 143, 357, 439, 458, 617, 684
DpnII GATC 6 cut(s) 141, 355, 437, 456, 615, 682
DrdI GACNNNNNNGTC 1 cut(s) 803
DseDI GACNNNNNNGTC 1 cut(s) 803
EaeI YGGCCR 1 cut(s) 556
Eco130I CCWWGG 2 cut(s) 578, 808
Eco47I GGWCC 2 cut(s) 136, 242
Eco57I CTGAAG 5 cut(s) 48, 380, 432, 449, 645
EcoO109I RGGNCCY 2 cut(s) 136, 242
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 5 cut(s) 210, 261, 597, 645, 783
EcoT14I CCWWGG 2 cut(s) 578, 808
ErhI CCWWGG 2 cut(s) 578, 808
FaeI CATG 4 cut(s) 148, 582, 595, 841
FaqI GGGAC 1 cut(s) 122
FatI CATG 4 cut(s) 144, 578, 591, 837
Fnu4HI GCNGC 2 cut(s) 371, 651
FokI GGATG 4 cut(s) 270, 560, 595, 672
Fsp4HI GCNGC 2 cut(s) 371, 651
FspBI CTAG 3 cut(s) 23, 48, 132
GluI GCNGC 2 cut(s) 371, 651
GsaI CCCAGC 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 620
HaeIII GGCC 3 cut(s) 52, 558, 782
Hin1I GRCGYC 1 cut(s) 750
Hin1II CATG 4 cut(s) 148, 582, 595, 841
HincII GTYRAC 2 cut(s) 385, 634
HindII GTYRAC 2 cut(s) 385, 634
HinfI GANTC 2 cut(s) 158, 797
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 4 cut(s) 281, 339, 385, 634
Hpy188I TCNGA 9 cut(s) 163, 186, 276, 360, 429, 437, 451, 625, 823
Hpy188III TCNNGA 6 cut(s) 122, 139, 203, 290, 460, 689
Hpy8I GTNNAC 4 cut(s) 281, 339, 385, 634
Hpy99I CGWCG 1 cut(s) 755
HpyAV CCTTC 3 cut(s) 355, 456, 652
HpyCH4III ACNGT 3 cut(s) 391, 416, 473
HpyCH4IV ACGT 2 cut(s) 693, 750
HpyCH4V TGCA 2 cut(s) 20, 764
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 770, 779
HpySE526I ACGT 2 cut(s) 693, 750
Hsp92I GRCGYC 1 cut(s) 750
Hsp92II CATG 4 cut(s) 148, 582, 595, 841
KflI GGGWCCC 1 cut(s) 136
Kzo9I GATC 6 cut(s) 141, 355, 437, 456, 615, 682
Lsp1109I GCAGC 1 cut(s) 662
LweI GCATC 1 cut(s) 582
MabI ACCWGGT 2 cut(s) 210, 261
MaeI CTAG 3 cut(s) 23, 48, 132
MaeII ACGT 2 cut(s) 693, 750
MaeIII GTNAC 1 cut(s) 812
MalI GATC 6 cut(s) 143, 357, 439, 458, 617, 684
MboI GATC 6 cut(s) 141, 355, 437, 456, 615, 682
MboII GAAGA 9 cut(s) 41, 74, 204, 218, 267, 475, 521, 638, 767
MflI RGATCY 2 cut(s) 437, 456
MlsI TGGCCA 1 cut(s) 558
MluCI AATT 6 cut(s) 56, 66, 102, 173, 510, 817
MluNI TGGCCA 1 cut(s) 558
MlyI GAGTC 2 cut(s) 167, 791
MmeI TCCRAC 3 cut(s) 232, 245, 526
MnlI CCTC 3 cut(s) 228, 297, 469
Mox20I TGGCCA 1 cut(s) 558
MroXI GAANNNNTTC 2 cut(s) 66, 102
MscI TGGCCA 1 cut(s) 558
MseI TTAA 2 cut(s) 267, 480
Msp20I TGGCCA 1 cut(s) 558
MspR9I CCNGG 5 cut(s) 212, 263, 599, 647, 785
MvaI CCWGG 5 cut(s) 212, 263, 599, 647, 785
MwoI GCNNNNNNNGC 3 cut(s) 17, 770, 779
NcoI CCATGG 1 cut(s) 578
NdeII GATC 6 cut(s) 141, 355, 437, 456, 615, 682
NlaIII CATG 4 cut(s) 148, 582, 595, 841
NlaIV GGNNCC 4 cut(s) 137, 138, 216, 458
NmuCI GTSAC 1 cut(s) 812
NspI RCATGY 1 cut(s) 841
PciI ACATGT 1 cut(s) 837
PdmI GAANNNNTTC 2 cut(s) 66, 102
PkrI GCNGC 2 cut(s) 372, 652
PleI GAGTC 2 cut(s) 166, 791
PpsI GAGTC 2 cut(s) 166, 791
PpuMI RGGWCCY 2 cut(s) 136, 242
PscI ACATGT 1 cut(s) 837
Psp5II RGGWCCY 2 cut(s) 136, 242
Psp6I CCWGG 5 cut(s) 210, 261, 597, 645, 783
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 5 cut(s) 210, 261, 597, 645, 783
PspN4I GGNNCC 4 cut(s) 137, 138, 216, 458
PspPI GGNCC 3 cut(s) 136, 242, 781
PspPPI RGGWCCY 2 cut(s) 136, 242
PstNI CAGNNNCTG 1 cut(s) 827
PsuI RGATCY 2 cut(s) 437, 456
SaqAI TTAA 2 cut(s) 267, 480
SatI GCNGC 2 cut(s) 371, 651
Sau3AI GATC 6 cut(s) 141, 355, 437, 456, 615, 682
Sau96I GGNCC 3 cut(s) 136, 242, 781
SchI GAGTC 2 cut(s) 167, 791
ScrFI CCNGG 5 cut(s) 212, 263, 599, 647, 785
SexAI ACCWGGT 2 cut(s) 210, 261
SfaNI GCATC 1 cut(s) 582
SinI GGWCC 2 cut(s) 136, 242
SmlI CTYRAG 2 cut(s) 288, 568
SmoI CTYRAG 2 cut(s) 288, 568
Sse9I AATT 6 cut(s) 56, 66, 102, 173, 510, 817
SsiI CCGC 1 cut(s) 371
SspMI CTAG 3 cut(s) 23, 48, 132
StyD4I CCNGG 5 cut(s) 210, 261, 597, 645, 783
StyI CCWWGG 2 cut(s) 578, 808
TaaI ACNGT 3 cut(s) 391, 416, 473
TaiI ACGT 2 cut(s) 696, 753
TaqI TCGA 2 cut(s) 753, 775
TasI AATT 6 cut(s) 56, 66, 102, 173, 510, 817
TauI GCSGC 1 cut(s) 373
Tru1I TTAA 2 cut(s) 267, 480
Tru9I TTAA 2 cut(s) 267, 480
TscAI CASTG 1 cut(s) 679
TseFI GTSAC 1 cut(s) 812
TseI GCWGC 1 cut(s) 650
Tsp45I GTSAC 1 cut(s) 812
TspDTI ATGAA 3 cut(s) 54, 59, 599
TspRI CASTG 1 cut(s) 679
VpaK11BI GGWCC 2 cut(s) 136, 242
XapI RAATTY 3 cut(s) 66, 102, 173
XceI RCATGY 1 cut(s) 841
XmnI GAANNNNTTC 2 cut(s) 66, 102
XspI CTAG 3 cut(s) 23, 48, 132
ZraI GACGTC 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.