Rmu_sc0005532.1_g000002

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005532.1
OG0000419
Physical Location & Seq
Reverse (-)
4606 .. 5910
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005532.1_g000002.1.cds

Sequence Viewer

Length: 981 bp
atgttcagccaaagagatgatgacgaaggtcgtaatcccaggagcagaagaactgggaaagaacatgagcctgaagaggatcccaaagaaaccaaagaaaaaatcctcaaaagtaaaggctcatcaagaccgttgacggctgctgctttgcgcaaaagcagaccaactccaactggagttataaatgtttttaattatgaattaataacctttgatactcctgtgttcagaactggcaggagactagcttaccaccagaaagcaattttggataatctcctatttgcttttcaggaaagaagcagtggtctaatgttctcgacactctttgcactagctgaagaactttatgagaatgccagaccacagtttgaagaacttcatacacagcagagaccttatgttggaagatacttagtcaatgttcagagtgaacatcctcaagaacacaagctctggcttgttgaaaatggttttgtccataatctgtggactaaaacaaattatgatcttaaaggtttgccgcttatcataaaggcaaacggtgaggttgagtatatttttccatatcattatgtgagaattattcaaaggaaatatctacaacctgcctgtgttgggtataatggccaaccaaactcaagcatcccctggatgaaggctatgaccttggaatacatcaaaaagatcatctatgaagatatcaacaataccttcctggcagcaggagaaaaaattattatcactgcttacaatcatcctgacgtagtcagcagtgacatgttcttatctcttaccagaaaagagatagattcgacactagcatgcttacagtgggtggaaaggctggaaacagacaaccactacaagatgtatgttgatacagatgtcgaagataatgcaacaactgctcgaatgtcccaggcagataacgactcatttgtccttggtcacaattcaaaaacatacgaaaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

326

Amino Acids

37.89

Weight (kDa)

6.23

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 182
AasI GACNNNNNNGTC 1 cut(s) 941
Acc16I TGCGCA 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 616
AciI CCGC 1 cut(s) 524
AclWI GGATC 2 cut(s) 74, 87
AcoI YGGCCR 1 cut(s) 628
AcuI CTGAAG 2 cut(s) 93, 360
AfiI CCNNNNNNNGG 2 cut(s) 404, 618
AflIII ACRYGT 2 cut(s) 780, 975
AgsI TTSAA 4 cut(s) 374, 467, 590, 960
AjnI CCWGG 4 cut(s) 38, 650, 717, 921
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 3 cut(s) 248, 338, 454
AluI AGCT 3 cut(s) 248, 338, 454
Alw26I GTCTC 2 cut(s) 235, 388
AlwI GGATC 2 cut(s) 74, 87
AoxI GGCC 1 cut(s) 628
ApeKI GCWGC 3 cut(s) 140, 143, 722
AseI ATTAAT 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 557
BaeI ACNNNNGTAYC 4 cut(s) 207, 240, 873, 906
BalI TGGCCA 1 cut(s) 630
BamHI GGATCC 1 cut(s) 79
BbvI GCAGC 3 cut(s) 127, 130, 734
BceAI ACGGC 1 cut(s) 153
BcgI CGANNNNNNTGC 2 cut(s) 881, 915
BciT130I CCWGG 4 cut(s) 40, 652, 719, 923
BcoDI GTCTC 2 cut(s) 235, 388
BfaI CTAG 3 cut(s) 245, 335, 821
BfuAI ACCTGC 1 cut(s) 616
BisI GCNGC 4 cut(s) 141, 144, 524, 723
BlsI GCNGC 4 cut(s) 142, 145, 525, 724
Bme1390I CCNGG 4 cut(s) 40, 652, 719, 923
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 4 cut(s) 40, 652, 719, 923
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 654
BmuI ACTGGG 1 cut(s) 63
BoxI GACNNNNGTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 195
BpuEI CTTGAG 2 cut(s) 426, 625
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 5 cut(s) 38, 650, 669, 921, 946
Bsc4I CCNNNNNNNGG 2 cut(s) 404, 618
Bse1I ACTGG 3 cut(s) 58, 178, 238
BseBI CCWGG 4 cut(s) 40, 652, 719, 923
BseDI CCNNGG 5 cut(s) 38, 650, 669, 921, 946
BseGI GGATG 4 cut(s) 436, 645, 660, 757
BseLI CCNNNNNNNGG 2 cut(s) 404, 618
BseNI ACTGG 3 cut(s) 58, 178, 238
BseXI GCAGC 3 cut(s) 127, 130, 734
BshFI GGCC 1 cut(s) 630
BslFI GGGAC 1 cut(s) 904
BslI CCNNNNNNNGG 2 cut(s) 404, 618
BsmAI GTCTC 2 cut(s) 235, 388
BsmFI GGGAC 1 cut(s) 904
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 1 cut(s) 630
Bso31I GGTCTC 1 cut(s) 388
Bsp143I GATC 3 cut(s) 79, 508, 687
BspACI CCGC 1 cut(s) 524
BspANI GGCC 1 cut(s) 630
BspLI GGNNCC 1 cut(s) 81
BspMI ACCTGC 1 cut(s) 616
BspPI GGATC 2 cut(s) 74, 87
BspTNI GGTCTC 1 cut(s) 388
BsrI ACTGG 3 cut(s) 58, 178, 238
BssECI CCNNGG 5 cut(s) 38, 650, 669, 921, 946
BssMI GATC 3 cut(s) 79, 508, 687
BssT1I CCWWGG 2 cut(s) 669, 946
Bst2UI CCWGG 4 cut(s) 40, 652, 719, 923
Bst4CI ACNGT 4 cut(s) 132, 369, 545, 834
Bst6I CTCTTC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 908
BstC8I GCNNGC 1 cut(s) 826
BstDEI CTNAG 1 cut(s) 415
BstF5I GGATG 4 cut(s) 436, 645, 660, 757
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 3 cut(s) 82, 511, 690
BstMAI GTCTC 2 cut(s) 235, 388
BstMBI GATC 3 cut(s) 79, 508, 687
BstMWI GCNNNNNNNGC 1 cut(s) 908
BstNI CCWGG 4 cut(s) 40, 652, 719, 923
BstNSI RCATGY 3 cut(s) 784, 828, 979
BstPAI GACNNNNGTC 1 cut(s) 27
BstSCI CCNGG 4 cut(s) 38, 650, 717, 921
BstV1I GCAGC 3 cut(s) 127, 130, 734
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 1 cut(s) 630
BtsCI GGATG 4 cut(s) 436, 645, 660, 757
BtsI GCAGTG 3 cut(s) 310, 744, 781
BtsIMutI CAGTG 4 cut(s) 310, 744, 781, 839
BveI ACCTGC 1 cut(s) 616
Cac8I GCNNGC 1 cut(s) 826
CfoI GCGC 1 cut(s) 153
CviAII CATG 4 cut(s) 65, 781, 825, 976
DdeI CTNAG 1 cut(s) 415
DpnI GATC 3 cut(s) 81, 510, 689
DpnII GATC 3 cut(s) 79, 508, 687
DrdI GACNNNNNNGTC 1 cut(s) 941
DseDI GACNNNNNNGTC 1 cut(s) 941
EaeI YGGCCR 1 cut(s) 628
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 669, 946
Eco31I GGTCTC 1 cut(s) 388
Eco32I GATATC 1 cut(s) 703
Eco57I CTGAAG 2 cut(s) 93, 360
EcoRII CCWGG 4 cut(s) 38, 650, 717, 921
EcoRV GATATC 1 cut(s) 703
EcoT14I CCWWGG 2 cut(s) 669, 946
ErhI CCWWGG 2 cut(s) 669, 946
FaeI CATG 4 cut(s) 68, 784, 828, 979
FaqI GGGAC 1 cut(s) 904
FatI CATG 4 cut(s) 64, 780, 824, 975
Fnu4HI GCNGC 4 cut(s) 141, 144, 524, 723
FokI GGATG 4 cut(s) 423, 632, 667, 744
Fsp4HI GCNGC 4 cut(s) 141, 144, 524, 723
FspBI CTAG 3 cut(s) 245, 335, 821
FspI TGCGCA 1 cut(s) 152
GlaI GCGC 1 cut(s) 152
GluI GCNGC 4 cut(s) 141, 144, 524, 723
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 1 cut(s) 630
HhaI GCGC 1 cut(s) 153
Hin1II CATG 4 cut(s) 68, 784, 828, 979
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 2 cut(s) 812, 935
HphI GGTGA 1 cut(s) 557
Hpy166II GTNNAC 3 cut(s) 135, 434, 492
Hpy188I TCNGA 2 cut(s) 230, 429
Hpy188III TCNNGA 5 cut(s) 126, 293, 319, 443, 761
Hpy8I GTNNAC 3 cut(s) 135, 434, 492
HpyAV CCTTC 3 cut(s) 20, 652, 724
HpyCH4III ACNGT 4 cut(s) 132, 369, 545, 834
HpyCH4IV ACGT 1 cut(s) 765
HpyCH4V TGCA 2 cut(s) 332, 902
HpyF10VI GCNNNNNNNGC 1 cut(s) 908
HpyF3I CTNAG 1 cut(s) 415
HpySE526I ACGT 1 cut(s) 765
Hsp92II CATG 4 cut(s) 68, 784, 828, 979
HspAI GCGC 1 cut(s) 151
Kzo9I GATC 3 cut(s) 79, 508, 687
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 3 cut(s) 127, 130, 734
LweI GCATC 1 cut(s) 654
MaeI CTAG 3 cut(s) 245, 335, 821
MaeII ACGT 1 cut(s) 765
MaeIII GTNAC 2 cut(s) 776, 950
MalI GATC 3 cut(s) 81, 510, 689
MboI GATC 3 cut(s) 79, 508, 687
MboII GAAGA 7 cut(s) 60, 86, 353, 386, 420, 710, 905
MflI RGATCY 1 cut(s) 79
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 7 cut(s) 193, 200, 264, 502, 582, 735, 955
MluNI TGGCCA 1 cut(s) 630
MlyI GAGTC 1 cut(s) 929
MmeI TCCRAC 2 cut(s) 194, 385
MnlI CCTC 4 cut(s) 70, 116, 450, 541
Mox20I TGGCCA 1 cut(s) 630
MroXI GAANNNNTTC 1 cut(s) 378
MscI TGGCCA 1 cut(s) 630
MseI TTAA 3 cut(s) 192, 203, 513
MslI CAYNNNNRTG 1 cut(s) 823
Msp20I TGGCCA 1 cut(s) 630
MspR9I CCNGG 4 cut(s) 40, 652, 719, 923
Mva1269I GAATGC 1 cut(s) 361
MvaI CCWGG 4 cut(s) 40, 652, 719, 923
MwoI GCNNNNNNNGC 1 cut(s) 908
NdeII GATC 3 cut(s) 79, 508, 687
NlaIII CATG 4 cut(s) 68, 784, 828, 979
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 2 cut(s) 776, 950
NsbI TGCGCA 1 cut(s) 152
NspI RCATGY 3 cut(s) 784, 828, 979
PaeI GCATGC 1 cut(s) 828
PciI ACATGT 2 cut(s) 780, 975
PctI GAATGC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 812
PflFI GACNNNGTC 1 cut(s) 767
PkrI GCNGC 4 cut(s) 142, 145, 525, 724
PleI GAGTC 1 cut(s) 929
PpsI GAGTC 1 cut(s) 929
PscI ACATGT 2 cut(s) 780, 975
PshAI GACNNNNGTC 1 cut(s) 27
PshBI ATTAAT 1 cut(s) 203
PsiI TTATAA 1 cut(s) 182
Psp6I CCWGG 4 cut(s) 38, 650, 717, 921
PspGI CCWGG 4 cut(s) 38, 650, 717, 921
PspN4I GGNNCC 1 cut(s) 81
PsuI RGATCY 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 767
RseI CAYNNNNRTG 1 cut(s) 823
SaqAI TTAA 3 cut(s) 192, 203, 513
SatI GCNGC 4 cut(s) 141, 144, 524, 723
Sau3AI GATC 3 cut(s) 79, 508, 687
SchI GAGTC 1 cut(s) 929
ScrFI CCNGG 4 cut(s) 40, 652, 719, 923
SfaNI GCATC 1 cut(s) 654
SmiMI CAYNNNNRTG 1 cut(s) 823
SmlI CTYRAG 2 cut(s) 441, 640
SmoI CTYRAG 2 cut(s) 441, 640
SphI GCATGC 1 cut(s) 828
Sse9I AATT 7 cut(s) 193, 200, 264, 502, 582, 735, 955
SsiI CCGC 1 cut(s) 524
SspMI CTAG 3 cut(s) 245, 335, 821
StyD4I CCNGG 4 cut(s) 38, 650, 717, 921
StyI CCWWGG 2 cut(s) 669, 946
TaaI ACNGT 4 cut(s) 132, 369, 545, 834
TaiI ACGT 1 cut(s) 768
TaqI TCGA 4 cut(s) 320, 815, 891, 913
TasI AATT 7 cut(s) 193, 200, 264, 502, 582, 735, 955
TauI GCSGC 1 cut(s) 526
TfiI GAWTC 1 cut(s) 812
Tru1I TTAA 3 cut(s) 192, 203, 513
Tru9I TTAA 3 cut(s) 192, 203, 513
TscAI CASTG 4 cut(s) 310, 751, 781, 839
TseFI GTSAC 2 cut(s) 776, 950
TseI GCWGC 3 cut(s) 140, 143, 722
Tsp45I GTSAC 2 cut(s) 776, 950
TspDTI ATGAA 4 cut(s) 213, 371, 671, 711
TspRI CASTG 4 cut(s) 310, 751, 781, 839
Tth111I GACNNNGTC 1 cut(s) 767
VspI ATTAAT 1 cut(s) 203
XceI RCATGY 3 cut(s) 784, 828, 979
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 3 cut(s) 245, 335, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.