Rmu_sc0028733.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028733.1
OG0000419
Physical Location & Seq
Forward (+)
8361 .. 9206
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028733.1_g000002.1.cds

Sequence Viewer

Length: 588 bp
atgttcccagccctctttgcattagctgaagaactctacgaaaatggaccttatgtggggagatacttagtcaatgttcagagtgaacatcctcaagaacacaagctctggcttgttgaaaatggttttgtccataatctgtggactaaaacaaatgatgatctgaaaggtttgccacctatcattgtcaacacagtcaaaaatataagaaaaaatgactgtatgcttcatttaaagtttagatccactcctttagaatggatccagaaggcaaacggtgaagttgaatatattcctccatatcattatgtgagaattattcaaaggaaatatcttcaaccagcctgtgtagggtacaatggccaaccaaactcaagcatcccatggatgaaggccatggctctagaatacatcaagaagatcatctatgaagatatccacaatcccttccttgcagcaggagagaaaactattatcactgcttacgatcatcatgactgggtggaaaggcttgaaactgacaaccactacaagatgtatgttgttacagatgtcgaagataatgctaccactgctagaatggcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

22.82

Weight (kDa)

6.13

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 237, 256, 269
AcoI YGGCCR 1 cut(s) 361
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 2 cut(s) 56, 351
AgsI TTSAA 5 cut(s) 119, 287, 323, 338, 515
AluBI AGCT 2 cut(s) 26, 106
AluI AGCT 2 cut(s) 26, 106
AlwI GGATC 3 cut(s) 237, 256, 269
AoxI GGCC 3 cut(s) 361, 393, 582
ApeKI GCWGC 1 cut(s) 455
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 1 cut(s) 47
BalI TGGCCA 1 cut(s) 363
BamHI GGATCC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 467
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BfaI CTAG 3 cut(s) 404, 576, 586
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 263
BmrI ACTGGG 1 cut(s) 508
BmsI GCATC 1 cut(s) 387
BmuI ACTGGG 1 cut(s) 508
BpuEI CTTGAG 2 cut(s) 78, 358
BsaJI CCNNGG 2 cut(s) 383, 396
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 351
Bse1I ACTGG 1 cut(s) 503
BseDI CCNNGG 2 cut(s) 383, 396
BseGI GGATG 3 cut(s) 88, 378, 393
BseLI CCNNNNNNNGG 2 cut(s) 56, 351
BseNI ACTGG 1 cut(s) 503
BseXI GCAGC 1 cut(s) 467
BseYI CCCAGC 1 cut(s) 7
BshFI GGCC 3 cut(s) 363, 395, 584
BslI CCNNNNNNNGG 2 cut(s) 56, 351
BsnI GGCC 3 cut(s) 363, 395, 584
Bsp143I GATC 5 cut(s) 160, 242, 261, 420, 487
Bsp19I CCATGG 2 cut(s) 383, 396
BspANI GGCC 3 cut(s) 363, 395, 584
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 1 cut(s) 263
BspPI GGATC 3 cut(s) 237, 256, 269
BsrI ACTGG 1 cut(s) 503
BssECI CCNNGG 2 cut(s) 383, 396
BssMI GATC 5 cut(s) 160, 242, 261, 420, 487
BssT1I CCWWGG 2 cut(s) 383, 396
Bst4CI ACNGT 3 cut(s) 196, 221, 278
BstDEI CTNAG 1 cut(s) 67
BstDSI CCRYGG 2 cut(s) 383, 396
BstF5I GGATG 3 cut(s) 88, 378, 393
BstKTI GATC 5 cut(s) 163, 245, 264, 423, 490
BstMBI GATC 5 cut(s) 160, 242, 261, 420, 487
BstMWI GCNNNNNNNGC 3 cut(s) 17, 572, 581
BstV1I GCAGC 1 cut(s) 467
BstX2I RGATCY 2 cut(s) 242, 261
BstYI RGATCY 2 cut(s) 242, 261
BsuRI GGCC 3 cut(s) 363, 395, 584
BtgI CCRYGG 2 cut(s) 383, 396
BtsCI GGATG 3 cut(s) 88, 378, 393
BtsI GCAGTG 2 cut(s) 477, 570
BtsIMutI CAGTG 2 cut(s) 477, 570
CciI TCATGA 1 cut(s) 493
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 355
CviAII CATG 3 cut(s) 384, 397, 494
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 1 cut(s) 67
DpnI GATC 5 cut(s) 162, 244, 263, 422, 489
DpnII GATC 5 cut(s) 160, 242, 261, 420, 487
DraI TTTAAA 1 cut(s) 234
EaeI YGGCCR 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 383, 396
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 48
EcoRV GATATC 1 cut(s) 436
EcoT14I CCWWGG 2 cut(s) 383, 396
ErhI CCWWGG 2 cut(s) 383, 396
FaeI CATG 3 cut(s) 387, 400, 497
FatI CATG 3 cut(s) 383, 396, 493
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 3 cut(s) 75, 365, 400
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 3 cut(s) 404, 576, 586
GluI GCNGC 1 cut(s) 456
GsaI CCCAGC 1 cut(s) 11
HaeIII GGCC 3 cut(s) 363, 395, 584
Hin1II CATG 3 cut(s) 387, 400, 497
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 3 cut(s) 86, 144, 190
Hpy188I TCNGA 2 cut(s) 81, 165
Hpy188III TCNNGA 5 cut(s) 95, 265, 404, 415, 494
Hpy8I GTNNAC 3 cut(s) 86, 144, 190
HpyAV CCTTC 3 cut(s) 262, 385, 457
HpyCH4III ACNGT 3 cut(s) 196, 221, 278
HpyCH4V TGCA 2 cut(s) 20, 455
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 572, 581
HpyF3I CTNAG 1 cut(s) 67
Hsp92II CATG 3 cut(s) 387, 400, 497
Kzo9I GATC 5 cut(s) 160, 242, 261, 420, 487
LpnPI CCDG 7 cut(s) 21, 94, 278, 354, 358, 444, 484
Lsp1109I GCAGC 1 cut(s) 467
LweI GCATC 1 cut(s) 387
MaeI CTAG 3 cut(s) 404, 576, 586
MaeIII GTNAC 1 cut(s) 544
MalI GATC 5 cut(s) 162, 244, 263, 422, 489
MboI GATC 5 cut(s) 160, 242, 261, 420, 487
MboII GAAGA 5 cut(s) 41, 326, 430, 443, 569
MflI RGATCY 2 cut(s) 242, 261
MlsI TGGCCA 1 cut(s) 363
MluCI AATT 1 cut(s) 315
MluNI TGGCCA 1 cut(s) 363
MnlI CCTC 3 cut(s) 23, 102, 306
Mox20I TGGCCA 1 cut(s) 363
MroXI GAANNNNTTC 1 cut(s) 291
MscI TGGCCA 1 cut(s) 363
MseI TTAA 1 cut(s) 233
Msp20I TGGCCA 1 cut(s) 363
MwoI GCNNNNNNNGC 3 cut(s) 17, 572, 581
NcoI CCATGG 2 cut(s) 383, 396
NdeII GATC 5 cut(s) 160, 242, 261, 420, 487
NlaIII CATG 3 cut(s) 387, 400, 497
NlaIV GGNNCC 1 cut(s) 263
PagI TCATGA 1 cut(s) 493
PdmI GAANNNNTTC 1 cut(s) 291
PkrI GCNGC 1 cut(s) 457
PspFI CCCAGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 263
PspPI GGNCC 1 cut(s) 47
PsuI RGATCY 2 cut(s) 242, 261
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 5 cut(s) 160, 242, 261, 420, 487
Sau96I GGNCC 1 cut(s) 47
SetI ASST 5 cut(s) 28, 52, 108, 172, 181
SfaNI GCATC 1 cut(s) 387
SinI GGWCC 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 93, 373
SmoI CTYRAG 2 cut(s) 93, 373
Sse9I AATT 1 cut(s) 315
SspMI CTAG 3 cut(s) 404, 576, 586
StyI CCWWGG 2 cut(s) 383, 396
TaaI ACNGT 3 cut(s) 196, 221, 278
TaqI TCGA 1 cut(s) 555
TasI AATT 1 cut(s) 315
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 2 cut(s) 484, 577
TseI GCWGC 1 cut(s) 455
TspDTI ATGAA 3 cut(s) 218, 404, 444
TspRI CASTG 2 cut(s) 484, 577
VpaK11BI GGWCC 1 cut(s) 47
XbaI TCTAGA 1 cut(s) 403
XcmI CCANNNNNNNNNTGG 1 cut(s) 577
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 3 cut(s) 404, 576, 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.