Rmu_sc0003249.1_g000029

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003249.1
OG0000419
Physical Location & Seq
Forward (+)
114080 .. 115033
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003249.1_g000029.1.cds

Sequence Viewer

Length: 897 bp
ctggataatcttttatttgcctttcaagaaagaagcagtggtctgaagttcccagctctctttacattagctgaagaactctacgaaaatggtataccacagtttgaagaaattcatacacaacagagtgctgtcagaaaagagaaaatttacttcctcgaaaatccagaaagtgctaaggtcccaatcatggcactcaatgaatcagattggcatgaattccacaatctgataggaaggcataatcctgaagacctagttcctccaactctctttatcgtcgcaggaccatatgttggaagatacttagtcaatgttcagagcgaacatcctcaagaacacaagctttggcttgttgtaaatggttttgtccataatctgtggactaaaacaaatgatgatcttaaaggtttgccacctatcattgtcaacacagtcaaaaacattagaaaaaatgattgtatgcttcgtctgaagtttagatccactcctccagaatggatccagaagacaaacggtgagcctgcctgtgttggttacaatggccaacctaactcaagcattccatggatgaaagtcatggctctggaatatatcaagaagatcatctctgaagatatcaacaataccttcctggcagcaggagaaaaaactattatcactgcttacgatcatactgatgtagtcagcagtgacctgttcctatctcttaccagaaaggagatagattcgacactggcatgcttacagtgggtggaaagacttgaaactaacaaccactacaagatgtatgctgatacagatgtcgaaaacaatgcaacaactgttcgaatggcccaggcagacaacgactcatttgtctttggtcacaattcagaaactgacgagaacatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

298

Amino Acids

34.14

Weight (kDa)

5.16

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 857
AccB7I CCANNNNNTGG 1 cut(s) 296
AccI GTMKAC 1 cut(s) 94
AclWI GGATC 3 cut(s) 477, 496, 509
AcoI YGGCCR 1 cut(s) 544
AcsI RAATTY 3 cut(s) 111, 147, 218
AcuI CTGAAG 5 cut(s) 65, 93, 270, 494, 633
AfiI CCNNNNNNNGG 2 cut(s) 190, 296
AgsI TTSAA 3 cut(s) 26, 107, 767
AjnI CCWGG 2 cut(s) 633, 837
AluBI AGCT 3 cut(s) 56, 71, 346
AluI AGCT 3 cut(s) 56, 71, 346
AlwI GGATC 3 cut(s) 477, 496, 509
AlwNI CAGNNNCTG 1 cut(s) 881
AoxI GGCC 2 cut(s) 544, 834
ApeKI GCWGC 1 cut(s) 638
ApoI RAATTY 3 cut(s) 111, 147, 218
Asp700I GAANNNNTTC 1 cut(s) 111
AspS9I GGNCC 3 cut(s) 181, 287, 835
AsuHPI GGTGA 1 cut(s) 530
AsuII TTCGAA 1 cut(s) 829
AvaII GGWCC 2 cut(s) 181, 287
BaeI ACNNNNGTAYC 2 cut(s) 789, 822
BalI TGGCCA 1 cut(s) 546
BamHI GGATCC 1 cut(s) 501
BbsI GAAGAC 2 cut(s) 258, 515
BbvI GCAGC 1 cut(s) 650
BcgI CGANNNNNNTGC 2 cut(s) 797, 831
BciT130I CCWGG 2 cut(s) 635, 839
BfaI CTAG 1 cut(s) 257
BisI GCNGC 1 cut(s) 639
BlsI GCNGC 1 cut(s) 640
Bme1390I CCNGG 2 cut(s) 635, 839
Bme18I GGWCC 2 cut(s) 181, 287
BmgT120I GGNCC 3 cut(s) 181, 287, 835
BmiI GGNNCC 2 cut(s) 183, 503
BmrFI CCNGG 2 cut(s) 635, 839
BpiI GAAGAC 2 cut(s) 258, 515
BpmI CTGGAG 1 cut(s) 477
Bpu10I CCTNAGC 1 cut(s) 177
Bpu14I TTCGAA 1 cut(s) 829
BpuEI CTTGAG 2 cut(s) 318, 541
BsaJI CCNNGG 2 cut(s) 566, 837
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 296
Bse1I ACTGG 1 cut(s) 741
BseBI CCWGG 2 cut(s) 635, 839
BseDI CCNNGG 2 cut(s) 566, 837
BseGI GGATG 2 cut(s) 328, 576
BseLI CCNNNNNNNGG 2 cut(s) 190, 296
BseNI ACTGG 1 cut(s) 741
BseRI GAGGAG 1 cut(s) 480
BseXI GCAGC 1 cut(s) 650
BseYI CCCAGC 1 cut(s) 52
BshFI GGCC 2 cut(s) 546, 836
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 190, 296
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 561
BsnI GGCC 2 cut(s) 546, 836
Bsp119I TTCGAA 1 cut(s) 829
Bsp143I GATC 5 cut(s) 400, 482, 501, 603, 670
Bsp19I CCATGG 1 cut(s) 566
BspANI GGCC 2 cut(s) 546, 836
BspLI GGNNCC 2 cut(s) 183, 503
BspPI GGATC 3 cut(s) 477, 496, 509
BspT104I TTCGAA 1 cut(s) 829
BsrI ACTGG 1 cut(s) 741
BssECI CCNNGG 2 cut(s) 566, 837
BssMI GATC 5 cut(s) 400, 482, 501, 603, 670
BssNAI GTATAC 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 566
Bst1107I GTATAC 1 cut(s) 95
Bst2UI CCWGG 2 cut(s) 635, 839
Bst4CI ACNGT 5 cut(s) 102, 436, 518, 750, 826
BstBI TTCGAA 1 cut(s) 829
BstC8I GCNNGC 2 cut(s) 525, 742
BstDEI CTNAG 2 cut(s) 177, 307
BstDSI CCRYGG 1 cut(s) 566
BstF5I GGATG 2 cut(s) 328, 576
BstKTI GATC 5 cut(s) 403, 485, 504, 606, 673
BstMBI GATC 5 cut(s) 400, 482, 501, 603, 670
BstNI CCWGG 2 cut(s) 635, 839
BstNSI RCATGY 1 cut(s) 744
BstSCI CCNGG 2 cut(s) 633, 837
BstV1I GCAGC 1 cut(s) 650
BstV2I GAAGAC 2 cut(s) 258, 515
BstX2I RGATCY 2 cut(s) 482, 501
BstYI RGATCY 2 cut(s) 482, 501
BstZ17I GTATAC 1 cut(s) 95
BsuRI GGCC 2 cut(s) 546, 836
BtgI CCRYGG 1 cut(s) 566
BtsCI GGATG 2 cut(s) 328, 576
BtsI GCAGTG 3 cut(s) 43, 660, 697
BtsIMutI CAGTG 5 cut(s) 43, 660, 697, 734, 755
Cac8I GCNNGC 2 cut(s) 525, 742
CaiI CAGNNNCTG 1 cut(s) 881
Cfr13I GGNCC 3 cut(s) 181, 287, 835
CviAII CATG 5 cut(s) 190, 215, 567, 580, 741
CviJI RGCY 8 cut(s) 56, 71, 346, 352, 523, 546, 584, 836
CviKI_1 RGCY 8 cut(s) 56, 71, 346, 352, 523, 546, 584, 836
DdeI CTNAG 2 cut(s) 177, 307
DpnI GATC 5 cut(s) 402, 484, 503, 605, 672
DpnII GATC 5 cut(s) 400, 482, 501, 603, 670
DrdI GACNNNNNNGTC 1 cut(s) 857
DseDI GACNNNNNNGTC 1 cut(s) 857
EaeI YGGCCR 1 cut(s) 544
Eco130I CCWWGG 1 cut(s) 566
Eco32I GATATC 1 cut(s) 619
Eco47I GGWCC 2 cut(s) 181, 287
Eco57I CTGAAG 5 cut(s) 65, 93, 270, 494, 633
EcoO109I RGGNCCY 1 cut(s) 181
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 2 cut(s) 633, 837
EcoRV GATATC 1 cut(s) 619
EcoT14I CCWWGG 1 cut(s) 566
ErhI CCWWGG 1 cut(s) 566
FaeI CATG 5 cut(s) 193, 218, 570, 583, 744
FaqI GGGAC 1 cut(s) 167
FatI CATG 5 cut(s) 189, 214, 566, 579, 740
FauNDI CATATG 2 cut(s) 292, 893
FblI GTMKAC 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 639
FokI GGATG 2 cut(s) 315, 583
Fsp4HI GCNGC 1 cut(s) 639
FspBI CTAG 1 cut(s) 257
GluI GCNGC 1 cut(s) 639
GsaI CCCAGC 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 2 cut(s) 546, 836
Hin1II CATG 5 cut(s) 193, 218, 570, 583, 744
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 3 cut(s) 203, 728, 851
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 3 cut(s) 95, 384, 430
Hpy188I TCNGA 8 cut(s) 45, 137, 208, 231, 321, 474, 613, 877
Hpy188III TCNNGA 8 cut(s) 26, 167, 248, 335, 494, 505, 587, 598
Hpy8I GTNNAC 3 cut(s) 95, 384, 430
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 231, 640
HpyCH4III ACNGT 5 cut(s) 102, 436, 518, 750, 826
HpyCH4V TGCA 1 cut(s) 818
HpyF3I CTNAG 2 cut(s) 177, 307
Hsp92II CATG 5 cut(s) 193, 218, 570, 583, 744
Kzo9I GATC 5 cut(s) 400, 482, 501, 603, 670
Lsp1109I GCAGC 1 cut(s) 650
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 3 cut(s) 536, 692, 866
MalI GATC 5 cut(s) 402, 484, 503, 605, 672
MboI GATC 5 cut(s) 400, 482, 501, 603, 670
MboII GAAGA 7 cut(s) 86, 119, 263, 312, 520, 613, 626
MflI RGATCY 2 cut(s) 482, 501
MlsI TGGCCA 1 cut(s) 546
MluCI AATT 4 cut(s) 111, 147, 218, 871
MluNI TGGCCA 1 cut(s) 546
MlyI GAGTC 1 cut(s) 845
MmeI TCCRAC 2 cut(s) 277, 290
MnlI CCTC 4 cut(s) 167, 273, 342, 501
Mox20I TGGCCA 1 cut(s) 546
MroXI GAANNNNTTC 1 cut(s) 111
MscI TGGCCA 1 cut(s) 546
MseI TTAA 1 cut(s) 405
MslI CAYNNNNRTG 2 cut(s) 678, 739
Msp20I TGGCCA 1 cut(s) 546
MspR9I CCNGG 2 cut(s) 635, 839
Mva1269I GAATGC 1 cut(s) 561
MvaI CCWGG 2 cut(s) 635, 839
NcoI CCATGG 1 cut(s) 566
NdeI CATATG 2 cut(s) 292, 893
NdeII GATC 5 cut(s) 400, 482, 501, 603, 670
NlaIII CATG 5 cut(s) 193, 218, 570, 583, 744
NlaIV GGNNCC 2 cut(s) 183, 503
NmuCI GTSAC 2 cut(s) 692, 866
NspI RCATGY 1 cut(s) 744
NspV TTCGAA 1 cut(s) 829
PaeI GCATGC 1 cut(s) 744
PctI GAATGC 1 cut(s) 561
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 2 cut(s) 203, 728
PflMI CCANNNNNTGG 1 cut(s) 296
PkrI GCNGC 1 cut(s) 640
PleI GAGTC 1 cut(s) 845
PpsI GAGTC 1 cut(s) 845
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 633, 837
PspFI CCCAGC 1 cut(s) 52
PspGI CCWGG 2 cut(s) 633, 837
PspN4I GGNNCC 2 cut(s) 183, 503
PspPI GGNCC 3 cut(s) 181, 287, 835
PspPPI RGGWCCY 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 881
PsuI RGATCY 2 cut(s) 482, 501
RseI CAYNNNNRTG 2 cut(s) 678, 739
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 1 cut(s) 639
Sau3AI GATC 5 cut(s) 400, 482, 501, 603, 670
Sau96I GGNCC 3 cut(s) 181, 287, 835
SchI GAGTC 1 cut(s) 845
ScrFI CCNGG 2 cut(s) 635, 839
SfuI TTCGAA 1 cut(s) 829
SinI GGWCC 2 cut(s) 181, 287
SmiMI CAYNNNNRTG 2 cut(s) 678, 739
SmlI CTYRAG 2 cut(s) 333, 556
SmoI CTYRAG 2 cut(s) 333, 556
SphI GCATGC 1 cut(s) 744
Sse9I AATT 4 cut(s) 111, 147, 218, 871
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 2 cut(s) 633, 837
StyI CCWWGG 1 cut(s) 566
TaaI ACNGT 5 cut(s) 102, 436, 518, 750, 826
TaqI TCGA 4 cut(s) 159, 731, 807, 829
TasI AATT 4 cut(s) 111, 147, 218, 871
TfiI GAWTC 2 cut(s) 203, 728
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 5 cut(s) 43, 667, 697, 741, 755
TseFI GTSAC 2 cut(s) 692, 866
TseI GCWGC 1 cut(s) 638
Tsp45I GTSAC 2 cut(s) 692, 866
TspDTI ATGAA 4 cut(s) 104, 216, 231, 587
TspRI CASTG 5 cut(s) 43, 667, 697, 741, 755
Van91I CCANNNNNTGG 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 181, 287
XapI RAATTY 3 cut(s) 111, 147, 218
XceI RCATGY 1 cut(s) 744
XmiI GTMKAC 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.