Rmu_sc0002132.1_g000057

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002132.1
OG0000419
Physical Location & Seq
Forward (+)
222928 .. 223836
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002132.1_g000057.1.cds

Sequence Viewer

Length: 909 bp
atgttcccagctctttttgcactagctgaagaactctacgaaaatggtaggccacaatttgaagaaatgcatacacagcagagtgctgtaagaaaagagaaaattcacttccttgaaagtccagaaagtgctagggtccctatcatagaactcaatgaatcagattggcatgaattccatagtctgataggaagacataattcagaagacctagttcctccaacactctttattgtttcaggaccttatgttgggagatacttagtcaatgttcagagtgaacatcctcaggaacacaagctctggcttgttgaaaatggttttgtccataatctgtggaccaaaacaaatgatgatctgaaaggtttgccacctattattgtcaacacagtcaaaaacattagaaaaaatgactgtatgcttcgtctgaagttcagatccactcctccagaatggagtcagaaggcaaacagagaagttgaatatattcctccatatcattatgtgagaattattcaaaggaaatatcttcaaccagcctgtgtagggtacaatggccaaccaaactcaagcatcccgtggatgaaggccatggccttagagtatatcaagaagatcatctctgaagatattagcaatactttcctggcagcaggagtaaaaattattatcactgcatacgatcatcctgacgtagtcagcagtgacctattcctatctctcaccagaaaagagataaattcgacaatggcatgcatgcgctgggtggaaaagcttgaaactaacaaccactataaaatgtatgtcgatacagatgtcgaagataatgctaccactgttagaatggcccaggcagacaacagctcctttgtctttggctaccatttagaaacagatgagaatatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

302

Amino Acids

35.06

Weight (kDa)

5.75

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 432
AcoI YGGCCR 1 cut(s) 556
AcsI RAATTY 3 cut(s) 102, 173, 739
AcuI CTGAAG 3 cut(s) 48, 449, 645
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 2 cut(s) 251, 546
AgsI TTSAA 7 cut(s) 62, 116, 314, 482, 518, 533, 779
AjnI CCWGG 2 cut(s) 645, 849
AluBI AGCT 5 cut(s) 11, 26, 301, 775, 864
AluI AGCT 5 cut(s) 11, 26, 301, 775, 864
AlwI GGATC 1 cut(s) 432
AoxI GGCC 5 cut(s) 50, 556, 588, 594, 846
ApeKI GCWGC 1 cut(s) 650
ApoI RAATTY 3 cut(s) 102, 173, 739
Asp700I GAANNNNTTC 1 cut(s) 486
AspLEI GCGC 1 cut(s) 762
AspS9I GGNCC 4 cut(s) 136, 242, 339, 847
AsuHPI GGTGA 1 cut(s) 715
AvaII GGWCC 3 cut(s) 136, 242, 339
AxyI CCTNAGG 1 cut(s) 288
BaeI ACNNNNGTAYC 2 cut(s) 801, 834
BalI TGGCCA 1 cut(s) 558
BbsI GAAGAC 2 cut(s) 199, 213
BbvI GCAGC 1 cut(s) 662
BcgI CGANNNNNNTGC 2 cut(s) 809, 843
BciT130I CCWGG 2 cut(s) 647, 851
BfaI CTAG 3 cut(s) 23, 132, 212
BisI GCNGC 1 cut(s) 651
BlsI GCNGC 1 cut(s) 652
Bme1390I CCNGG 2 cut(s) 647, 851
Bme18I GGWCC 3 cut(s) 136, 242, 339
BmgT120I GGNCC 4 cut(s) 136, 242, 339, 847
BmiI GGNNCC 2 cut(s) 137, 138
BmrFI CCNGG 2 cut(s) 647, 851
BmsI GCATC 1 cut(s) 582
BpiI GAAGAC 2 cut(s) 199, 213
BpmI CTGGAG 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 553
BsaJI CCNNGG 3 cut(s) 578, 591, 849
BsaXI ACNNNNNCTCC 2 cut(s) 848, 878
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 546
Bse21I CCTNAGG 1 cut(s) 288
BseBI CCWGG 2 cut(s) 647, 851
BseDI CCNNGG 3 cut(s) 578, 591, 849
BseGI GGATG 4 cut(s) 283, 573, 588, 685
BseLI CCNNNNNNNGG 2 cut(s) 251, 546
BseMII CTCAG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 435
BseXI GCAGC 1 cut(s) 662
BseYI CCCAGC 2 cut(s) 7, 762
BshFI GGCC 5 cut(s) 52, 558, 590, 596, 848
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 251, 546
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 5 cut(s) 52, 558, 590, 596, 848
Bsp143I GATC 4 cut(s) 355, 437, 615, 682
Bsp19I CCATGG 1 cut(s) 591
BspANI GGCC 5 cut(s) 52, 558, 590, 596, 848
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 137, 138
BspPI GGATC 1 cut(s) 432
BssECI CCNNGG 3 cut(s) 578, 591, 849
BssMI GATC 4 cut(s) 355, 437, 615, 682
BssT1I CCWWGG 1 cut(s) 591
Bst2UI CCWGG 2 cut(s) 647, 851
Bst4CI ACNGT 3 cut(s) 391, 416, 838
BstC8I GCNNGC 2 cut(s) 754, 758
BstDEI CTNAG 3 cut(s) 262, 288, 598
BstDSI CCRYGG 2 cut(s) 578, 591
BstF5I GGATG 4 cut(s) 283, 573, 588, 685
BstHHI GCGC 1 cut(s) 762
BstKTI GATC 4 cut(s) 358, 440, 618, 685
BstMBI GATC 4 cut(s) 355, 437, 615, 682
BstMWI GCNNNNNNNGC 2 cut(s) 17, 76
BstNI CCWGG 2 cut(s) 647, 851
BstNSI RCATGY 2 cut(s) 756, 760
BstSCI CCNGG 2 cut(s) 645, 849
BstV1I GCAGC 1 cut(s) 662
BstV2I GAAGAC 2 cut(s) 199, 213
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
Bsu36I CCTNAGG 1 cut(s) 288
BsuRI GGCC 5 cut(s) 52, 558, 590, 596, 848
BtgI CCRYGG 2 cut(s) 578, 591
BtsCI GGATG 4 cut(s) 283, 573, 588, 685
BtsI GCAGTG 2 cut(s) 672, 709
BtsIMutI CAGTG 3 cut(s) 672, 709, 834
Cac8I GCNNGC 2 cut(s) 754, 758
CfoI GCGC 1 cut(s) 762
Cfr13I GGNCC 4 cut(s) 136, 242, 339, 847
Csp6I GTAC 1 cut(s) 550
CviAII CATG 4 cut(s) 170, 592, 753, 757
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 3 cut(s) 262, 288, 598
DpnI GATC 4 cut(s) 357, 439, 617, 684
DpnII GATC 4 cut(s) 355, 437, 615, 682
EaeI YGGCCR 1 cut(s) 556
Eco130I CCWWGG 1 cut(s) 591
Eco47I GGWCC 3 cut(s) 136, 242, 339
Eco57I CTGAAG 3 cut(s) 48, 449, 645
Eco81I CCTNAGG 1 cut(s) 288
EcoO109I RGGNCCY 2 cut(s) 136, 242
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 645, 849
EcoT14I CCWWGG 1 cut(s) 591
EcoT22I ATGCAT 2 cut(s) 72, 758
ErhI CCWWGG 1 cut(s) 591
FaeI CATG 4 cut(s) 173, 595, 756, 760
FaqI GGGAC 1 cut(s) 122
FatI CATG 4 cut(s) 169, 591, 752, 756
Fnu4HI GCNGC 1 cut(s) 651
FokI GGATG 4 cut(s) 270, 560, 595, 672
Fsp4HI GCNGC 1 cut(s) 651
FspBI CTAG 3 cut(s) 23, 132, 212
GlaI GCGC 1 cut(s) 761
GluI GCNGC 1 cut(s) 651
GsaI CCCAGC 2 cut(s) 11, 766
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 5 cut(s) 52, 558, 590, 596, 848
HhaI GCGC 1 cut(s) 762
Hin1II CATG 4 cut(s) 173, 595, 756, 760
Hin6I GCGC 1 cut(s) 760
HinP1I GCGC 1 cut(s) 760
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 2 cut(s) 158, 457
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 3 cut(s) 281, 339, 385
Hpy188I TCNGA 9 cut(s) 163, 186, 205, 276, 360, 429, 437, 462, 625
Hpy188III TCNNGA 6 cut(s) 122, 240, 290, 449, 610, 689
Hpy8I GTNNAC 3 cut(s) 281, 339, 385
HpyAV CCTTC 2 cut(s) 457, 580
HpyCH4III ACNGT 3 cut(s) 391, 416, 838
HpyCH4IV ACGT 1 cut(s) 693
HpyCH4V TGCA 4 cut(s) 20, 70, 677, 756
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 76
HpyF3I CTNAG 3 cut(s) 262, 288, 598
HpySE526I ACGT 1 cut(s) 693
Hsp92II CATG 4 cut(s) 173, 595, 756, 760
HspAI GCGC 1 cut(s) 760
KflI GGGWCCC 1 cut(s) 136
Kzo9I GATC 4 cut(s) 355, 437, 615, 682
LmnI GCTCC 1 cut(s) 869
Lsp1109I GCAGC 1 cut(s) 662
LweI GCATC 1 cut(s) 582
MaeI CTAG 3 cut(s) 23, 132, 212
MaeII ACGT 1 cut(s) 693
MaeIII GTNAC 1 cut(s) 704
MalI GATC 4 cut(s) 357, 439, 617, 684
MboI GATC 4 cut(s) 355, 437, 615, 682
MboII GAAGA 8 cut(s) 41, 74, 204, 218, 521, 625, 638, 833
MflI RGATCY 1 cut(s) 437
MlsI TGGCCA 1 cut(s) 558
MluCI AATT 7 cut(s) 56, 102, 173, 199, 510, 663, 739
MluNI TGGCCA 1 cut(s) 558
MlyI GAGTC 1 cut(s) 466
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 4 cut(s) 228, 297, 456, 501
Mox20I TGGCCA 1 cut(s) 558
Mph1103I ATGCAT 2 cut(s) 72, 758
MroXI GAANNNNTTC 1 cut(s) 486
MscI TGGCCA 1 cut(s) 558
Msp20I TGGCCA 1 cut(s) 558
MspR9I CCNGG 2 cut(s) 647, 851
MvaI CCWGG 2 cut(s) 647, 851
MwoI GCNNNNNNNGC 2 cut(s) 17, 76
NcoI CCATGG 1 cut(s) 591
NdeII GATC 4 cut(s) 355, 437, 615, 682
NlaIII CATG 4 cut(s) 173, 595, 756, 760
NlaIV GGNNCC 2 cut(s) 137, 138
NmuCI GTSAC 1 cut(s) 704
NsiI ATGCAT 2 cut(s) 72, 758
NspI RCATGY 2 cut(s) 756, 760
PaeI GCATGC 2 cut(s) 756, 760
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 695
PkrI GCNGC 1 cut(s) 652
PleI GAGTC 1 cut(s) 465
PpsI GAGTC 1 cut(s) 465
PpuMI RGGWCCY 2 cut(s) 136, 242
Psp5II RGGWCCY 2 cut(s) 136, 242
Psp6I CCWGG 2 cut(s) 645, 849
PspFI CCCAGC 2 cut(s) 7, 762
PspGI CCWGG 2 cut(s) 645, 849
PspN4I GGNNCC 2 cut(s) 137, 138
PspPI GGNCC 4 cut(s) 136, 242, 339, 847
PspPPI RGGWCCY 2 cut(s) 136, 242
PsuI RGATCY 1 cut(s) 437
PsyI GACNNNGTC 1 cut(s) 695
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
SatI GCNGC 1 cut(s) 651
Sau3AI GATC 4 cut(s) 355, 437, 615, 682
Sau96I GGNCC 4 cut(s) 136, 242, 339, 847
SchI GAGTC 1 cut(s) 466
ScrFI CCNGG 2 cut(s) 647, 851
SfaNI GCATC 1 cut(s) 582
SinI GGWCC 3 cut(s) 136, 242, 339
SmlI CTYRAG 1 cut(s) 568
SmoI CTYRAG 1 cut(s) 568
SphI GCATGC 2 cut(s) 756, 760
Sse9I AATT 7 cut(s) 56, 102, 173, 199, 510, 663, 739
SspMI CTAG 3 cut(s) 23, 132, 212
StyD4I CCNGG 2 cut(s) 645, 849
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 3 cut(s) 391, 416, 838
TaiI ACGT 1 cut(s) 696
TaqI TCGA 3 cut(s) 743, 807, 819
TasI AATT 7 cut(s) 56, 102, 173, 199, 510, 663, 739
TfiI GAWTC 1 cut(s) 158
TscAI CASTG 3 cut(s) 679, 709, 841
TseFI GTSAC 1 cut(s) 704
TseI GCWGC 1 cut(s) 650
Tsp45I GTSAC 1 cut(s) 704
TspDTI ATGAA 3 cut(s) 171, 186, 599
TspRI CASTG 3 cut(s) 679, 709, 841
Tth111I GACNNNGTC 1 cut(s) 695
VpaK11BI GGWCC 3 cut(s) 136, 242, 339
XapI RAATTY 3 cut(s) 102, 173, 739
XceI RCATGY 2 cut(s) 756, 760
XcmI CCANNNNNNNNNTGG 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 3 cut(s) 23, 132, 212
Zsp2I ATGCAT 2 cut(s) 72, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.