Rmu_sc0003669.1_g000013

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003669.1
OG0000419
Physical Location & Seq
Reverse (-)
55582 .. 56490
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003669.1_g000013.1.cds

Sequence Viewer

Length: 909 bp
atgttcccagctctctttgcactagctgaagaactctatgaaaatgctatgccacagtttgaagaacttcatacacagcagagtgctgttagaaaggaaaaaatccacttcctagaagatccagaaagtgctagggtccctatcatagcactcaaagaatcagactggcatgaattccatattctgataggaagtcataattctgaagaccgtattcctccaactctcttcattattgcaggaccaaatgttggaagatacttagtcaatgttcagagtgaacatcctcaagaacacaagctttggcttgttgaaaatggtgttgtccataatctgtggactaaaacaaatgatgatctcaaaggcttgccccctatcattgtcaacacagtcaaaaatattagaaaaaatgactgtacgcttcgactaaacttcaaatccactcctccagaatggatccagaaggcaaacggtgaggttgagtatatttctccatatcattatgtaagaattattcaaaggcaatatcttcagcctgcctgtgtgggatacaatggacagccaaacttaagcatctcatggatgaaagccatggctctagaatatatcaaaaagatcatctctgaagatatcaacaataccttcctggcagtaggagaaaaaactattatcactgcttacaatcatcctgacatagtccgcagtgacctattcctatctctcaccagaaaagagatagactcgacactagcatgcttacagtgggtggagcgacttgaaacgaacaaccactatgaaatgtatgttgatacagatgtcgaagacaatgcaacaactgctcgtatggcccaagcagataacgactcgtttgtccttggtcacaattcagaaacatacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

302

Amino Acids

34.85

Weight (kDa)

5.23

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 869
AccB7I CCANNNNNTGG 1 cut(s) 251
AciI CCGC 1 cut(s) 700
AclWI GGATC 3 cut(s) 113, 451, 464
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 4 cut(s) 48, 225, 515, 645
AfaI GTAC 1 cut(s) 418
AfiI CCNNNNNNNGG 1 cut(s) 251
AflII CTTAAG 1 cut(s) 568
AflIII ACRYGT 1 cut(s) 903
AgsI TTSAA 5 cut(s) 62, 314, 436, 518, 779
AjnI CCWGG 1 cut(s) 645
AluBI AGCT 3 cut(s) 11, 26, 301
AluI AGCT 3 cut(s) 11, 26, 301
AlwI GGATC 3 cut(s) 113, 451, 464
AoxI GGCC 1 cut(s) 846
ApoI RAATTY 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 66
AspS9I GGNCC 3 cut(s) 136, 242, 847
AsuHPI GGTGA 2 cut(s) 485, 715
AvaII GGWCC 2 cut(s) 136, 242
BaeI ACNNNNGTAYC 2 cut(s) 801, 834
BamHI GGATCC 1 cut(s) 456
BbsI GAAGAC 2 cut(s) 213, 828
BcgI CGANNNNNNTGC 2 cut(s) 809, 843
BciT130I CCWGG 1 cut(s) 647
BciVI GTATCC 1 cut(s) 542
BfaI CTAG 5 cut(s) 23, 113, 132, 599, 749
BfrI CTTAAG 1 cut(s) 568
BfuI GTATCC 1 cut(s) 542
Bme1390I CCNGG 1 cut(s) 647
Bme18I GGWCC 2 cut(s) 136, 242
BmgT120I GGNCC 3 cut(s) 136, 242, 847
BmiI GGNNCC 3 cut(s) 137, 138, 458
BmrFI CCNGG 1 cut(s) 647
BmsI GCATC 1 cut(s) 582
BpiI GAAGAC 2 cut(s) 213, 828
BplI GAGNNNNNCTC 2 cut(s) 725, 757
BpmI CTGGAG 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 591, 874
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 647
BseDI CCNNGG 2 cut(s) 591, 874
BseGI GGATG 3 cut(s) 283, 588, 685
BseLI CCNNNNNNNGG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 435
BseYI CCCAGC 1 cut(s) 7
BshFI GGCC 1 cut(s) 848
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 848
Bsp143I GATC 4 cut(s) 118, 355, 456, 615
Bsp19I CCATGG 1 cut(s) 591
BspACI CCGC 1 cut(s) 700
BspANI GGCC 1 cut(s) 848
BspLI GGNNCC 3 cut(s) 137, 138, 458
BspPI GGATC 3 cut(s) 113, 451, 464
BspTI CTTAAG 1 cut(s) 568
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 591, 874
BssMI GATC 4 cut(s) 118, 355, 456, 615
BssT1I CCWWGG 2 cut(s) 591, 874
Bst2UI CCWGG 1 cut(s) 647
Bst4CI ACNGT 6 cut(s) 57, 212, 391, 416, 473, 762
Bst6I CTCTTC 1 cut(s) 233
BstAFI CTTAAG 1 cut(s) 568
BstAPI GCANNNNNTGC 1 cut(s) 836
BstC8I GCNNGC 3 cut(s) 368, 537, 754
BstDEI CTNAG 1 cut(s) 262
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 3 cut(s) 283, 588, 685
BstKTI GATC 4 cut(s) 121, 358, 459, 618
BstMBI GATC 4 cut(s) 118, 355, 456, 615
BstMWI GCNNNNNNNGC 3 cut(s) 17, 836, 845
BstNI CCWGG 1 cut(s) 647
BstNSI RCATGY 2 cut(s) 756, 907
BstSCI CCNGG 1 cut(s) 645
BstV2I GAAGAC 2 cut(s) 213, 828
BstX2I RGATCY 2 cut(s) 118, 456
BstYI RGATCY 2 cut(s) 118, 456
BsuI GTATCC 1 cut(s) 542
BsuRI GGCC 1 cut(s) 848
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 3 cut(s) 283, 588, 685
BtsI GCAGTG 2 cut(s) 672, 709
BtsIMutI CAGTG 3 cut(s) 672, 709, 767
Cac8I GCNNGC 3 cut(s) 368, 537, 754
Cfr13I GGNCC 3 cut(s) 136, 242, 847
Csp6I GTAC 1 cut(s) 417
CviAII CATG 5 cut(s) 170, 579, 592, 753, 904
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 1 cut(s) 262
DpnI GATC 4 cut(s) 120, 357, 458, 617
DpnII GATC 4 cut(s) 118, 355, 456, 615
DrdI GACNNNNNNGTC 1 cut(s) 869
DseDI GACNNNNNNGTC 1 cut(s) 869
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco130I CCWWGG 2 cut(s) 591, 874
Eco32I GATATC 1 cut(s) 631
Eco47I GGWCC 2 cut(s) 136, 242
Eco57I CTGAAG 4 cut(s) 48, 225, 515, 645
EcoO109I RGGNCCY 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 645
EcoRV GATATC 1 cut(s) 631
EcoT14I CCWWGG 2 cut(s) 591, 874
ErhI CCWWGG 2 cut(s) 591, 874
FaeI CATG 5 cut(s) 173, 582, 595, 756, 907
FaqI GGGAC 1 cut(s) 122
FatI CATG 5 cut(s) 169, 578, 591, 752, 903
FokI GGATG 3 cut(s) 270, 595, 672
FspBI CTAG 5 cut(s) 23, 113, 132, 599, 749
GsaI CCCAGC 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 1 cut(s) 848
Hin1II CATG 5 cut(s) 173, 582, 595, 756, 907
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 3 cut(s) 158, 740, 863
HphI GGTGA 2 cut(s) 485, 715
Hpy166II GTNNAC 3 cut(s) 281, 339, 385
Hpy188I TCNGA 6 cut(s) 163, 186, 205, 276, 625, 889
Hpy188III TCNNGA 6 cut(s) 122, 290, 449, 460, 599, 689
Hpy8I GTNNAC 3 cut(s) 281, 339, 385
HpyAV CCTTC 2 cut(s) 457, 652
HpyCH4III ACNGT 6 cut(s) 57, 212, 391, 416, 473, 762
HpyCH4V TGCA 3 cut(s) 20, 239, 830
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 836, 845
HpyF3I CTNAG 1 cut(s) 262
Hsp92II CATG 5 cut(s) 173, 582, 595, 756, 907
KflI GGGWCCC 1 cut(s) 136
Kzo9I GATC 4 cut(s) 118, 355, 456, 615
LmnI GCTCC 1 cut(s) 769
LweI GCATC 1 cut(s) 582
MaeI CTAG 5 cut(s) 23, 113, 132, 599, 749
MaeIII GTNAC 2 cut(s) 704, 878
MalI GATC 4 cut(s) 120, 357, 458, 617
MboI GATC 4 cut(s) 118, 355, 456, 615
MboII GAAGA 9 cut(s) 41, 74, 128, 218, 220, 267, 521, 638, 833
MflI RGATCY 2 cut(s) 118, 456
MluCI AATT 4 cut(s) 173, 199, 510, 883
MlyI GAGTC 2 cut(s) 734, 857
MmeI TCCRAC 2 cut(s) 232, 245
MnlI CCTC 4 cut(s) 228, 297, 456, 469
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 1 cut(s) 569
MslI CAYNNNNRTG 1 cut(s) 751
MspCI CTTAAG 1 cut(s) 568
MspR9I CCNGG 1 cut(s) 647
MvaI CCWGG 1 cut(s) 647
MwoI GCNNNNNNNGC 3 cut(s) 17, 836, 845
NcoI CCATGG 1 cut(s) 591
NdeII GATC 4 cut(s) 118, 355, 456, 615
NlaIII CATG 5 cut(s) 173, 582, 595, 756, 907
NlaIV GGNNCC 3 cut(s) 137, 138, 458
NmuCI GTSAC 2 cut(s) 704, 878
NspI RCATGY 2 cut(s) 756, 907
PaeI GCATGC 1 cut(s) 756
PciI ACATGT 1 cut(s) 903
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 695
PflMI CCANNNNNTGG 1 cut(s) 251
PleI GAGTC 2 cut(s) 734, 857
PpsI GAGTC 2 cut(s) 734, 857
PpuMI RGGWCCY 1 cut(s) 136
PscI ACATGT 1 cut(s) 903
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 645
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 1 cut(s) 645
PspN4I GGNNCC 3 cut(s) 137, 138, 458
PspPI GGNCC 3 cut(s) 136, 242, 847
PspPPI RGGWCCY 1 cut(s) 136
PsuI RGATCY 2 cut(s) 118, 456
PsyI GACNNNGTC 1 cut(s) 695
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
RseI CAYNNNNRTG 1 cut(s) 751
SaqAI TTAA 1 cut(s) 569
Sau3AI GATC 4 cut(s) 118, 355, 456, 615
Sau96I GGNCC 3 cut(s) 136, 242, 847
SchI GAGTC 2 cut(s) 734, 857
ScrFI CCNGG 1 cut(s) 647
SetI ASST 6 cut(s) 13, 28, 303, 480, 644, 711
SfaNI GCATC 1 cut(s) 582
SinI GGWCC 2 cut(s) 136, 242
SmiMI CAYNNNNRTG 1 cut(s) 751
SmlI CTYRAG 2 cut(s) 288, 568
SmoI CTYRAG 2 cut(s) 288, 568
SphI GCATGC 1 cut(s) 756
Sse9I AATT 4 cut(s) 173, 199, 510, 883
SsiI CCGC 1 cut(s) 700
SspI AATATT 1 cut(s) 400
SspMI CTAG 5 cut(s) 23, 113, 132, 599, 749
StyD4I CCNGG 1 cut(s) 645
StyI CCWWGG 2 cut(s) 591, 874
TaaI ACNGT 6 cut(s) 57, 212, 391, 416, 473, 762
TaqI TCGA 3 cut(s) 424, 743, 819
TasI AATT 4 cut(s) 173, 199, 510, 883
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TscAI CASTG 3 cut(s) 679, 709, 767
TseFI GTSAC 2 cut(s) 704, 878
Tsp45I GTSAC 2 cut(s) 704, 878
TspDTI ATGAA 6 cut(s) 54, 59, 186, 220, 599, 810
TspRI CASTG 3 cut(s) 679, 709, 767
Tth111I GACNNNGTC 1 cut(s) 695
Van91I CCANNNNNTGG 1 cut(s) 251
Vha464I CTTAAG 1 cut(s) 568
VpaK11BI GGWCC 2 cut(s) 136, 242
XapI RAATTY 1 cut(s) 173
XbaI TCTAGA 1 cut(s) 598
XceI RCATGY 2 cut(s) 756, 907
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 5 cut(s) 23, 113, 132, 599, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.