Rmu_sc0001673.1_g000006

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001673.1
OG0000419
Physical Location & Seq
Forward (+)
31187 .. 32452
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001673.1_g000006.1.cds

Sequence Viewer

Length: 855 bp
atgatctccgtggaaaacccaagcttcgacggcaagatggtgaccggaggtggccgaagtcgccggaaatcggcaaaagtacccaactgccaccgtagcttcctccgctccaaatcgaggttctccggccaaatcgtcgtgaaatacctccacagacgtgacaaggggaagaaaccgagcttgggggtggccggattgtgtcctgggaccattgttggaagatacttagtcaatgttcagagtgaacatcctcaggaacacaagctctggcttgttgaaaatggttttgtccataatttgtggaccaaaacaaacgatgatctgaaaggtttgtcgcccatcattgtcaacacagtcaaaaacattagaaaaaatgactgtatgcttcgtctgaagttcagatccactcatccagaatggatccagaaggcaaactgtgaagttgaatatatccctccatatcactatgtaagaattattcaaaggaaatatcttcaaccagcctgtgtagggtacaatggccaaccaaactcaagcattccctggatgaaggccatgactctagaatatatcaaaaatatcatctctgaagatatcagcaataccttcctggcagcaggagaaaaaattattatcattgcttacgatcatcctgacgtagtcagcagtgaccttttcatatctctcaccagaaaagagatagactcgacattggcatgcatacactgggtagaaaagcttgaagctgacaaccactacaagatgtatgttgacacagatgtcgaagataatgctaccactgttagaatggcccaggcagacaacaactcctttgtctttggccaaaattcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

284

Amino Acids

32.4

Weight (kDa)

9.18

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
AccBSI CCGCTC 1 cut(s) 108
AciI CCGC 1 cut(s) 106
AclWI GGATC 3 cut(s) 396, 415, 428
AcoI YGGCCR 5 cut(s) 52, 127, 189, 520, 841
AcsI RAATTY 1 cut(s) 847
AcuI CTGAAG 2 cut(s) 413, 609
AfaI GTAC 2 cut(s) 81, 515
AfiI CCNNNNNNNGG 4 cut(s) 70, 117, 182, 510
AgsI TTSAA 5 cut(s) 278, 446, 482, 497, 743
AjiI CACGTC 1 cut(s) 158
AjnI CCWGG 4 cut(s) 202, 542, 609, 813
AjuI GAANNNNNNNTTGG 4 cut(s) 104, 136, 164, 196
AleI CACNNNNGTG 1 cut(s) 156
AluBI AGCT 6 cut(s) 24, 99, 180, 265, 739, 746
AluI AGCT 6 cut(s) 24, 99, 180, 265, 739, 746
AlwI GGATC 3 cut(s) 396, 415, 428
AoxI GGCC 7 cut(s) 52, 127, 189, 520, 552, 810, 841
ApeKI GCWGC 1 cut(s) 614
ApoI RAATTY 1 cut(s) 847
AspS9I GGNCC 3 cut(s) 207, 303, 811
AsuHPI GGTGA 2 cut(s) 52, 679
AvaII GGWCC 2 cut(s) 207, 303
AxyI CCTNAGG 1 cut(s) 252
BalI TGGCCA 2 cut(s) 522, 843
BamHI GGATCC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 626
BccI CCATC 2 cut(s) 31, 347
BceAI ACGGC 1 cut(s) 46
BcgI CGANNNNNNTGC 2 cut(s) 773, 807
BciT130I CCWGG 4 cut(s) 204, 544, 611, 815
BfaI CTAG 1 cut(s) 563
BisI GCNGC 1 cut(s) 615
BlsI GCNGC 1 cut(s) 616
Bme1390I CCNGG 4 cut(s) 204, 544, 611, 815
Bme18I GGWCC 2 cut(s) 207, 303
BmgBI CACGTC 1 cut(s) 158
BmgT120I GGNCC 3 cut(s) 207, 303, 811
BmiI GGNNCC 2 cut(s) 208, 422
BmrFI CCNGG 4 cut(s) 204, 544, 611, 815
BmrI ACTGGG 1 cut(s) 736
BmuI ACTGGG 1 cut(s) 736
BplI GAGNNNNNCTC 2 cut(s) 689, 721
BpuEI CTTGAG 1 cut(s) 517
BsaJI CCNNGG 4 cut(s) 9, 203, 542, 813
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 117, 182, 510
Bse1I ACTGG 1 cut(s) 731
Bse21I CCTNAGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 4 cut(s) 204, 544, 611, 815
BseDI CCNNGG 4 cut(s) 9, 203, 542, 813
BseGI GGATG 4 cut(s) 247, 409, 552, 649
BseLI CCNNNNNNNGG 4 cut(s) 70, 117, 182, 510
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 731
BseXI GCAGC 1 cut(s) 626
BshFI GGCC 7 cut(s) 54, 129, 191, 522, 554, 812, 843
BsiSI CCGG 4 cut(s) 45, 64, 126, 192
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 4 cut(s) 70, 117, 182, 510
BsmFI GGGAC 1 cut(s) 220
BsmI GAATGC 1 cut(s) 537
BsnI GGCC 7 cut(s) 54, 129, 191, 522, 554, 812, 843
Bsp143I GATC 5 cut(s) 3, 319, 401, 420, 646
BspACI CCGC 1 cut(s) 106
BspANI GGCC 7 cut(s) 54, 129, 191, 522, 554, 812, 843
BspCNI CTCAG 1 cut(s) 265
BspLI GGNNCC 2 cut(s) 208, 422
BspPI GGATC 3 cut(s) 396, 415, 428
BsrBI CCGCTC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 636
BsrI ACTGG 1 cut(s) 731
BssECI CCNNGG 4 cut(s) 9, 203, 542, 813
BssMI GATC 5 cut(s) 3, 319, 401, 420, 646
Bst2UI CCWGG 4 cut(s) 204, 544, 611, 815
Bst4CI ACNGT 5 cut(s) 95, 355, 380, 437, 802
BstC8I GCNNGC 1 cut(s) 718
BstDEI CTNAG 2 cut(s) 226, 252
BstDSI CCRYGG 1 cut(s) 9
BstEII GGTNACC 1 cut(s) 40
BstF5I GGATG 4 cut(s) 247, 409, 552, 649
BstKTI GATC 5 cut(s) 6, 322, 404, 423, 649
BstMBI GATC 5 cut(s) 3, 319, 401, 420, 646
BstMWI GCNNNNNNNGC 4 cut(s) 30, 60, 96, 105
BstNI CCWGG 4 cut(s) 204, 544, 611, 815
BstNSI RCATGY 1 cut(s) 720
BstPI GGTNACC 1 cut(s) 40
BstSCI CCNGG 4 cut(s) 202, 542, 609, 813
BstV1I GCAGC 1 cut(s) 626
BstX2I RGATCY 2 cut(s) 401, 420
BstYI RGATCY 2 cut(s) 401, 420
Bsu36I CCTNAGG 1 cut(s) 252
BsuRI GGCC 7 cut(s) 54, 129, 191, 522, 554, 812, 843
BtgI CCRYGG 1 cut(s) 9
BtrI CACGTC 1 cut(s) 158
BtsCI GGATG 4 cut(s) 247, 409, 552, 649
BtsI GCAGTG 1 cut(s) 673
BtsIMutI CAGTG 3 cut(s) 673, 724, 798
Cac8I GCNNGC 1 cut(s) 718
Cfr13I GGNCC 3 cut(s) 207, 303, 811
Csp6I GTAC 2 cut(s) 80, 514
CviAII CATG 2 cut(s) 556, 717
CviQI GTAC 2 cut(s) 80, 514
DdeI CTNAG 2 cut(s) 226, 252
DpnI GATC 5 cut(s) 5, 321, 403, 422, 648
DpnII GATC 5 cut(s) 3, 319, 401, 420, 646
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
EaeI YGGCCR 5 cut(s) 52, 127, 189, 520, 841
Eco32I GATATC 1 cut(s) 595
Eco47I GGWCC 2 cut(s) 207, 303
Eco57I CTGAAG 2 cut(s) 413, 609
Eco81I CCTNAGG 1 cut(s) 252
Eco91I GGTNACC 1 cut(s) 40
EcoO65I GGTNACC 1 cut(s) 40
EcoRII CCWGG 4 cut(s) 202, 542, 609, 813
EcoRV GATATC 1 cut(s) 595
EcoT22I ATGCAT 1 cut(s) 722
FaeI CATG 2 cut(s) 559, 720
FaqI GGGAC 1 cut(s) 220
FatI CATG 2 cut(s) 555, 716
Fnu4HI GCNGC 1 cut(s) 615
FokI GGATG 4 cut(s) 234, 396, 559, 636
Fsp4HI GCNGC 1 cut(s) 615
FspBI CTAG 1 cut(s) 563
GluI GCNGC 1 cut(s) 615
HaeIII GGCC 7 cut(s) 54, 129, 191, 522, 554, 812, 843
HapII CCGG 4 cut(s) 45, 64, 126, 192
Hin1II CATG 2 cut(s) 559, 720
HincII GTYRAC 2 cut(s) 349, 772
HindII GTYRAC 2 cut(s) 349, 772
HindIII AAGCTT 2 cut(s) 22, 737
HinfI GANTC 2 cut(s) 559, 704
HpaII CCGG 4 cut(s) 45, 64, 126, 192
HphI GGTGA 2 cut(s) 52, 679
Hpy166II GTNNAC 4 cut(s) 245, 303, 349, 772
Hpy188I TCNGA 5 cut(s) 240, 324, 393, 401, 589
Hpy188III TCNNGA 6 cut(s) 139, 254, 413, 424, 563, 653
Hpy8I GTNNAC 4 cut(s) 245, 303, 349, 772
Hpy99I CGWCG 2 cut(s) 32, 140
HpyAV CCTTC 3 cut(s) 421, 544, 616
HpyCH4III ACNGT 5 cut(s) 95, 355, 380, 437, 802
HpyCH4IV ACGT 2 cut(s) 157, 657
HpyCH4V TGCA 1 cut(s) 720
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 60, 96, 105
HpyF3I CTNAG 2 cut(s) 226, 252
HpySE526I ACGT 2 cut(s) 157, 657
Hsp92II CATG 2 cut(s) 559, 720
Kzo9I GATC 5 cut(s) 3, 319, 401, 420, 646
LmnI GCTCC 1 cut(s) 113
Lsp1109I GCAGC 1 cut(s) 626
MaeI CTAG 1 cut(s) 563
MaeII ACGT 2 cut(s) 157, 657
MaeIII GTNAC 3 cut(s) 40, 158, 668
MalI GATC 5 cut(s) 5, 321, 403, 422, 648
MbiI CCGCTC 1 cut(s) 108
MboI GATC 5 cut(s) 3, 319, 401, 420, 646
MboII GAAGA 5 cut(s) 181, 231, 485, 602, 797
MflI RGATCY 2 cut(s) 401, 420
MlsI TGGCCA 2 cut(s) 522, 843
MluCI AATT 4 cut(s) 295, 474, 627, 847
MluNI TGGCCA 2 cut(s) 522, 843
MlyI GAGTC 2 cut(s) 553, 698
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 6 cut(s) 41, 111, 113, 158, 261, 465
Mox20I TGGCCA 2 cut(s) 522, 843
Mph1103I ATGCAT 1 cut(s) 722
MscI TGGCCA 2 cut(s) 522, 843
MslI CAYNNNNRTG 2 cut(s) 156, 715
Msp20I TGGCCA 2 cut(s) 522, 843
MspI CCGG 4 cut(s) 45, 64, 126, 192
MspR9I CCNGG 4 cut(s) 204, 544, 611, 815
Mva1269I GAATGC 1 cut(s) 537
MvaI CCWGG 4 cut(s) 204, 544, 611, 815
MwoI GCNNNNNNNGC 4 cut(s) 30, 60, 96, 105
NdeII GATC 5 cut(s) 3, 319, 401, 420, 646
NlaIII CATG 2 cut(s) 559, 720
NlaIV GGNNCC 2 cut(s) 208, 422
NmuCI GTSAC 3 cut(s) 40, 158, 668
NsiI ATGCAT 1 cut(s) 722
NspI RCATGY 1 cut(s) 720
OliI CACNNNNGTG 1 cut(s) 156
PaeI GCATGC 1 cut(s) 720
PctI GAATGC 1 cut(s) 537
PflFI GACNNNGTC 1 cut(s) 659
PkrI GCNGC 1 cut(s) 616
PleI GAGTC 2 cut(s) 553, 698
PpsI GAGTC 2 cut(s) 553, 698
Psp6I CCWGG 4 cut(s) 202, 542, 609, 813
PspEI GGTNACC 1 cut(s) 40
PspGI CCWGG 4 cut(s) 202, 542, 609, 813
PspN4I GGNNCC 2 cut(s) 208, 422
PspPI GGNCC 3 cut(s) 207, 303, 811
PsuI RGATCY 2 cut(s) 401, 420
PsyI GACNNNGTC 1 cut(s) 659
RsaI GTAC 2 cut(s) 81, 515
RsaNI GTAC 2 cut(s) 80, 514
RseI CAYNNNNRTG 2 cut(s) 156, 715
SatI GCNGC 1 cut(s) 615
Sau3AI GATC 5 cut(s) 3, 319, 401, 420, 646
Sau96I GGNCC 3 cut(s) 207, 303, 811
SchI GAGTC 2 cut(s) 553, 698
ScrFI CCNGG 4 cut(s) 204, 544, 611, 815
SinI GGWCC 2 cut(s) 207, 303
SmiMI CAYNNNNRTG 2 cut(s) 156, 715
SmlI CTYRAG 1 cut(s) 532
SmoI CTYRAG 1 cut(s) 532
SphI GCATGC 1 cut(s) 720
Sse9I AATT 4 cut(s) 295, 474, 627, 847
SsiI CCGC 1 cut(s) 106
SspMI CTAG 1 cut(s) 563
StyD4I CCNGG 4 cut(s) 202, 542, 609, 813
TaaI ACNGT 5 cut(s) 95, 355, 380, 437, 802
TaiI ACGT 2 cut(s) 160, 660
TaqI TCGA 4 cut(s) 27, 116, 707, 783
TasI AATT 4 cut(s) 295, 474, 627, 847
TscAI CASTG 3 cut(s) 673, 731, 805
TseFI GTSAC 3 cut(s) 40, 158, 668
TseI GCWGC 1 cut(s) 614
Tsp45I GTSAC 3 cut(s) 40, 158, 668
TspDTI ATGAA 3 cut(s) 563, 667, 840
TspRI CASTG 3 cut(s) 673, 731, 805
Tth111I GACNNNGTC 1 cut(s) 659
VpaK11BI GGWCC 2 cut(s) 207, 303
XapI RAATTY 1 cut(s) 847
XbaI TCTAGA 1 cut(s) 562
XceI RCATGY 1 cut(s) 720
XcmI CCANNNNNNNNNTGG 1 cut(s) 805
XspI CTAG 1 cut(s) 563
Zsp2I ATGCAT 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.