RLG00000003022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000419
Physical Location & Seq
Reverse (-)
43238645 .. 43240706
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003022

Sequence Viewer

Length: 645 bp
ATGTTACAATACTGCTTTTGGGGTATGTGCTCGAGATTAGAGCTGGCGTGTGCGGTCGAGGCCGTACCTTCCTTTTTTCCTTTTATCTCCAAGACGTTGACATCCACCACCCGGGTTGAGTCGACGACCCTCTCTCTTCCTCTGATTGCTACGAACAGGGGATCGAATTTGCCCTCGGTTCATCGCTTTGGAATGATGGCTACGAGTGAATGGAGGGTTTGGGATCCAGGGCTCCTGCTGGCGTTATGGAGGTCTGATCGGGGTATTAGGCCGAGTGGTGGATTGGATGTTGTACCAGCAGCGGCTCTGGTTTTGCTGCGATCAGATCGTGCTTTGTTGGACCCCTTCTTCCACGGTTGGCAGCAGGTGTGGTGGTGTTCTCTATTTGATCTGCGAATTTGGAAGGACTGGTGGTTTCGCCTCTATGAGATGGCAGTGGAGAGAACTCGTGGGGAGGATGTTGCTCTTCCTGAGGATATTTCACACGAGATTTGTGGGTCTGCTCGAAGAGAGGACGCCGAAGTTAGGTTGGAGAGTCGGTGTGGTGTCAATGCGGCGCCGGCTGGAGTGATGATGAGGTGTTTGACAGGACCCGCCCCGAATTTCACCCTGAAATCCGAGGTGGCCCTGTGGGGCCCACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.15

Weight (kDa)

6.31

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 355
Acc36I ACCTGC 1 cut(s) 355
AccB1I GGYRCC 1 cut(s) 556
AccI GTMKAC 1 cut(s) 122
AciI CCGC 4 cut(s) 53, 302, 554, 594
AclWI GGATC 3 cut(s) 169, 218, 231
AcsI RAATTY 3 cut(s) 166, 396, 601
AcyI GRCGYC 2 cut(s) 516, 557
AfaI GTAC 2 cut(s) 66, 294
AfiI CCNNNNNNNGG 3 cut(s) 111, 278, 525
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw21I GWGCWC 1 cut(s) 32
AlwI GGATC 3 cut(s) 169, 218, 231
Ama87I CYCGRG 2 cut(s) 31, 111
AoxI GGCC 4 cut(s) 60, 269, 624, 634
ApaI GGGCCC 1 cut(s) 638
ApeKI GCWGC 3 cut(s) 299, 316, 361
ApoI RAATTY 3 cut(s) 166, 396, 601
AspLEI GCGC 1 cut(s) 559
AspS9I GGNCC 5 cut(s) 340, 590, 625, 634, 635
AsuC2I CCSGG 2 cut(s) 112, 113
AsuHPI GGTGA 1 cut(s) 598
AvaI CYCGRG 2 cut(s) 31, 111
AvaII GGWCC 2 cut(s) 340, 590
AxyI CCTNAGG 1 cut(s) 471
BaeGI GKGCMC 1 cut(s) 638
BamHI GGATCC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 556
BanII GRGCYC 2 cut(s) 234, 638
BauI CACGAG 2 cut(s) 447, 485
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 3 cut(s) 303, 311, 373
BccI CCATC 2 cut(s) 190, 424
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 2 cut(s) 112, 113
BfoI RGCGCY 1 cut(s) 560
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 5 cut(s) 300, 303, 317, 362, 555
BlsI GCNGC 5 cut(s) 301, 304, 318, 363, 556
Bme1390I CCNGG 3 cut(s) 112, 113, 228
Bme18I GGWCC 2 cut(s) 340, 590
BmeT110I CYCGRG 2 cut(s) 31, 111
BmgT120I GGNCC 5 cut(s) 340, 590, 625, 634, 635
BmiI GGNNCC 7 cut(s) 225, 233, 342, 558, 592, 635, 636
BmrFI CCNGG 3 cut(s) 112, 113, 228
BpmI CTGGAG 1 cut(s) 585
BpuMI CCSGG 2 cut(s) 112, 113
BsaHI GRCGYC 2 cut(s) 516, 557
BsaJI CCNNGG 5 cut(s) 111, 174, 227, 352, 618
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 278, 525
Bse118I RCCGGY 1 cut(s) 559
Bse1I ACTGG 1 cut(s) 413
Bse21I CCTNAGG 1 cut(s) 471
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 5 cut(s) 111, 174, 227, 352, 618
BseGI GGATG 3 cut(s) 101, 292, 463
BseLI CCNNNNNNNGG 3 cut(s) 111, 278, 525
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 1 cut(s) 413
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 3 cut(s) 303, 311, 373
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 4 cut(s) 62, 271, 626, 636
BshNI GGYRCC 1 cut(s) 556
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 2 cut(s) 31, 111
BsiSI CCGG 2 cut(s) 112, 560
BslI CCNNNNNNNGG 3 cut(s) 111, 278, 525
BsnI GGCC 4 cut(s) 62, 271, 626, 636
BsoBI CYCGRG 2 cut(s) 31, 111
Bsp120I GGGCCC 1 cut(s) 634
Bsp1286I GDGCHC 3 cut(s) 32, 234, 638
Bsp143I GATC 6 cut(s) 161, 223, 256, 320, 325, 388
BspACI CCGC 4 cut(s) 53, 302, 554, 594
BspANI GGCC 4 cut(s) 62, 271, 626, 636
BspCNI CTCAG 1 cut(s) 463
BspLI GGNNCC 7 cut(s) 225, 233, 342, 558, 592, 635, 636
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 3 cut(s) 169, 218, 231
BspQI GCTCTTC 1 cut(s) 471
BspT107I GGYRCC 1 cut(s) 556
BsrFI RCCGGY 1 cut(s) 559
BsrI ACTGG 1 cut(s) 413
BssAI RCCGGY 1 cut(s) 559
BssECI CCNNGG 5 cut(s) 111, 174, 227, 352, 618
BssMI GATC 6 cut(s) 161, 223, 256, 320, 325, 388
BssNI GRCGYC 2 cut(s) 516, 557
BssSI CACGAG 2 cut(s) 447, 485
Bst2BI CACGAG 2 cut(s) 447, 485
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 3 cut(s) 141, 471, 502
BstACI GRCGYC 2 cut(s) 516, 557
BstC8I GCNNGC 3 cut(s) 45, 240, 561
BstDEI CTNAG 2 cut(s) 471, 642
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 3 cut(s) 101, 292, 463
BstH2I RGCGCY 1 cut(s) 560
BstHHI GCGC 1 cut(s) 559
BstKTI GATC 6 cut(s) 164, 226, 259, 323, 328, 391
BstMBI GATC 6 cut(s) 161, 223, 256, 320, 325, 388
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 59, 560
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 3 cut(s) 110, 111, 226
BstSLI GKGCMC 1 cut(s) 638
BstV1I GCAGC 3 cut(s) 303, 311, 373
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 4 cut(s) 62, 271, 626, 636
BtgI CCRYGG 1 cut(s) 352
BtgZI GCGATG 1 cut(s) 167
BtsCI GGATG 3 cut(s) 101, 292, 463
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 1 cut(s) 441
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 3 cut(s) 45, 240, 561
CfoI GCGC 1 cut(s) 559
Cfr10I RCCGGY 1 cut(s) 559
Cfr13I GGNCC 5 cut(s) 340, 590, 625, 634, 635
Cfr9I CCCGGG 1 cut(s) 111
CseI GACGC 1 cut(s) 524
Csp6I GTAC 2 cut(s) 65, 293
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviJI RGCY 9 cut(s) 43, 62, 200, 232, 271, 305, 563, 626, 636
CviKI_1 RGCY 9 cut(s) 43, 62, 200, 232, 271, 305, 563, 626, 636
CviQI GTAC 2 cut(s) 65, 293
DdeI CTNAG 2 cut(s) 471, 642
DinI GGCGCC 1 cut(s) 558
DpnI GATC 6 cut(s) 163, 225, 258, 322, 327, 390
DpnII GATC 6 cut(s) 161, 223, 256, 320, 325, 388
Eam1104I CTCTTC 3 cut(s) 141, 471, 502
EarI CTCTTC 3 cut(s) 141, 471, 502
Eco24I GRGCYC 2 cut(s) 234, 638
Eco47I GGWCC 2 cut(s) 340, 590
Eco81I CCTNAGG 1 cut(s) 471
Eco88I CYCGRG 2 cut(s) 31, 111
EcoO109I RGGNCCY 2 cut(s) 590, 634
EcoRII CCWGG 1 cut(s) 226
EcoT38I GRGCYC 2 cut(s) 234, 638
EgeI GGCGCC 1 cut(s) 558
EheI GGCGCC 1 cut(s) 558
FaiI YATR 3 cut(s) 26, 247, 426
FauI CCCGC 1 cut(s) 601
FblI GTMKAC 1 cut(s) 122
Fnu4HI GCNGC 5 cut(s) 300, 303, 317, 362, 555
FokI GGATG 3 cut(s) 88, 299, 470
FriOI GRGCYC 2 cut(s) 234, 638
Fsp4HI GCNGC 5 cut(s) 300, 303, 317, 362, 555
GlaI GCGC 1 cut(s) 558
GluI GCNGC 5 cut(s) 300, 303, 317, 362, 555
GsuI CTGGAG 1 cut(s) 585
HaeII RGCGCY 1 cut(s) 560
HaeIII GGCC 4 cut(s) 62, 271, 626, 636
HapII CCGG 2 cut(s) 112, 560
HgaI GACGC 1 cut(s) 524
HhaI GCGC 1 cut(s) 559
Hin1I GRCGYC 2 cut(s) 516, 557
Hin6I GCGC 1 cut(s) 557
HinP1I GCGC 1 cut(s) 557
HincII GTYRAC 2 cut(s) 99, 123
HindII GTYRAC 2 cut(s) 99, 123
HinfI GANTC 2 cut(s) 119, 535
HpaII CCGG 2 cut(s) 112, 560
HphI GGTGA 1 cut(s) 598
Hpy166II GTNNAC 2 cut(s) 99, 123
Hpy188I TCNGA 4 cut(s) 144, 256, 325, 619
Hpy188III TCNNGA 2 cut(s) 33, 470
Hpy8I GTNNAC 2 cut(s) 99, 123
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 3 cut(s) 78, 355, 397
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4IV ACGT 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 560
HpyF3I CTNAG 2 cut(s) 471, 642
HpySE526I ACGT 1 cut(s) 95
Hsp92I GRCGYC 2 cut(s) 516, 557
HspAI GCGC 1 cut(s) 557
KasI GGCGCC 1 cut(s) 556
KroI GCCGGC 1 cut(s) 559
KroNI GCCGGC 1 cut(s) 561
Kzo9I GATC 6 cut(s) 161, 223, 256, 320, 325, 388
LguI GCTCTTC 1 cut(s) 471
LmnI GCTCC 1 cut(s) 237
Lsp1109I GCAGC 3 cut(s) 303, 311, 373
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 3
MalI GATC 6 cut(s) 163, 225, 258, 322, 327, 390
MboI GATC 6 cut(s) 161, 223, 256, 320, 325, 388
MboII GAAGA 4 cut(s) 128, 340, 458, 519
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 3 cut(s) 32, 234, 638
MluCI AATT 3 cut(s) 166, 396, 601
Mly113I GGCGCC 1 cut(s) 557
MlyI GAGTC 2 cut(s) 128, 544
MmeI TCCRAC 2 cut(s) 318, 510
MroNI GCCGGC 1 cut(s) 559
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 2 cut(s) 112, 560
MspR9I CCNGG 3 cut(s) 112, 113, 228
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 59, 560
NaeI GCCGGC 1 cut(s) 561
NarI GGCGCC 1 cut(s) 557
NciI CCSGG 2 cut(s) 112, 113
NdeII GATC 6 cut(s) 161, 223, 256, 320, 325, 388
NgoMIV GCCGGC 1 cut(s) 559
NlaIV GGNNCC 7 cut(s) 225, 233, 342, 558, 592, 635, 636
NmeAIII GCCGAG 1 cut(s) 297
PaeR7I CTCGAG 1 cut(s) 31
PaqCI CACCTGC 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 471
PdiI GCCGGC 1 cut(s) 561
PkrI GCNGC 5 cut(s) 301, 304, 318, 363, 556
PleI GAGTC 2 cut(s) 127, 543
PluTI GGCGCC 1 cut(s) 560
PpsI GAGTC 2 cut(s) 127, 543
PpuMI RGGWCCY 1 cut(s) 590
Psp5II RGGWCCY 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 7 cut(s) 225, 233, 342, 558, 592, 635, 636
PspOMI GGGCCC 1 cut(s) 634
PspPI GGNCC 5 cut(s) 340, 590, 625, 634, 635
PspPPI RGGWCCY 1 cut(s) 590
PsuI RGATCY 1 cut(s) 223
RsaI GTAC 2 cut(s) 66, 294
RsaNI GTAC 2 cut(s) 65, 293
SalI GTCGAC 1 cut(s) 121
SapI GCTCTTC 1 cut(s) 471
SatI GCNGC 5 cut(s) 300, 303, 317, 362, 555
Sau3AI GATC 6 cut(s) 161, 223, 256, 320, 325, 388
Sau96I GGNCC 5 cut(s) 340, 590, 625, 634, 635
SchI GAGTC 2 cut(s) 128, 544
ScrFI CCNGG 3 cut(s) 112, 113, 228
SduI GDGCHC 3 cut(s) 32, 234, 638
SetI ASST 9 cut(s) 45, 70, 98, 254, 369, 530, 581, 624, 643
SfoI GGCGCC 1 cut(s) 558
Sfr274I CTCGAG 1 cut(s) 31
SinI GGWCC 2 cut(s) 340, 590
SlaI CTCGAG 1 cut(s) 31
SmaI CCCGGG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
Sse9I AATT 3 cut(s) 166, 396, 601
SsiI CCGC 4 cut(s) 53, 302, 554, 594
SspDI GGCGCC 1 cut(s) 556
StyD4I CCNGG 3 cut(s) 110, 111, 226
TaaI ACNGT 1 cut(s) 356
TaiI ACGT 1 cut(s) 98
TaqI TCGA 5 cut(s) 32, 57, 122, 164, 505
TasI AATT 3 cut(s) 166, 396, 601
TauI GCSGC 2 cut(s) 305, 557
TscAI CASTG 1 cut(s) 441
TseI GCWGC 3 cut(s) 299, 316, 361
TspDTI ATGAA 1 cut(s) 170
TspMI CCCGGG 1 cut(s) 111
TspRI CASTG 1 cut(s) 441
VpaK11BI GGWCC 2 cut(s) 340, 590
XapI RAATTY 3 cut(s) 166, 396, 601
XhoI CTCGAG 1 cut(s) 31
XmaI CCCGGG 1 cut(s) 111
XmiI GTMKAC 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.