Rmu_sc0002367.1_g000001

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002367.1
OG0000419
Physical Location & Seq
Forward (+)
62 .. 1780
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002367.1_g000001.1.cds

Sequence Viewer

Length: 1263 bp
atgttcagccgaaaagatgatgacgaaggtcgcaaccccagaagcagaagaactgggaaagaacatgaaactgatgaggatcctaaagaaaaaatcctcaaaaggtttctactaagtccaaaaggactagccacaactgatcaatcccagggtaaaggattagctagcccatctcaaacggcagacggtaaaggctcatcaagatcgttgatggctgttgctttgccaaaaagcaaaccaactccaactggagttataaatgtttttagggctaaatactggaggctagcttaccaccagaaggcaatcttggataaccttttattttcctttcaagaaagaaacagtggtatcatgttcccagctctgttcgcattagctgaagaactccacgaaaatgctagaccacagaatgaagaaattcatatacagcagagtgctgttagaagtgaagaaattcactatcttgaaaatccaaaaagtgctagagttcctatcatagcactaaaagaatcagattggcttgaattccataatctgattggaatccataattctgaagactgtattactccaaccttcttcattgttgcaggaccttatgttggaagatacggagttaatgttcaaagtgaacatccacaagaacacaagctttggcttgttgaaaatggttttgtccataatctatggaccaaaacaaatgatgatctcaaaggcctaccccttatcatcatcaacatagtcaaaaatatcagaaaaaatgactgtactcttagactgaagttcatatctactccaccagaatggattcataaaacaaacggtgaatttgaatacatttctccttatcattatgtgagaattattcaaaaaagatatcttcagcccgcctgtgctggatacaatggccagccaaattcaagtattccatggatgaaggccatgtctctcgaatacattaagaaggtcatccaagaagatacaagaaatactttcctggcagcaggagaaaaaacaataatcactgcgtatgatcatcttgaagcaatcagcagtgacatcttcatgtctctcacaagaaaagagatagactcgacactggcatgcttacaatgggttaaaaaacttgaaaatgacaaccattacaagatgtatgtagatacagatgtcgaggaaaatgcaactatcgccagaatggctaggatggatagcaactcatttgtcctaggccacaactcagaaacagacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

420

Amino Acids

48.11

Weight (kDa)

6.58

Isoelectric Point (pI)

57.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AciI CCGC 1 cut(s) 891
AclWI GGATC 2 cut(s) 74, 87
AcoI YGGCCR 1 cut(s) 910
AcsI RAATTY 5 cut(s) 420, 456, 527, 830, 919
AcuI CTGAAG 4 cut(s) 402, 579, 803, 869
AfaI GTAC 1 cut(s) 772
AfiI CCNNNNNNNGG 2 cut(s) 301, 605
AflIII ACRYGT 1 cut(s) 1257
AjnI CCWGG 2 cut(s) 147, 999
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AloI GAACNNNNNNTCC 2 cut(s) 609, 641
AluBI AGCT 5 cut(s) 164, 290, 365, 380, 655
AluI AGCT 5 cut(s) 164, 290, 365, 380, 655
Alw26I GTCTC 2 cut(s) 954, 1077
AlwI GGATC 2 cut(s) 74, 87
AoxI GGCC 4 cut(s) 718, 910, 942, 1231
ApeKI GCWGC 1 cut(s) 1004
ApoI RAATTY 5 cut(s) 420, 456, 527, 830, 919
Asp700I GAANNNNTTC 3 cut(s) 420, 456, 810
AspA2I CCTAGG 1 cut(s) 1228
AspS9I GGNCC 2 cut(s) 596, 693
AsuHPI GGTGA 1 cut(s) 839
AsuNHI GCTAGC 2 cut(s) 164, 286
AvaII GGWCC 2 cut(s) 596, 693
AvrII CCTAGG 1 cut(s) 1228
BaeI ACNNNNGTAYC 4 cut(s) 334, 367, 1155, 1188
BalI TGGCCA 1 cut(s) 912
BamHI GGATCC 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 567
BbvI GCAGC 1 cut(s) 1016
BccI CCATC 3 cut(s) 178, 205, 1201
BceAI ACGGC 1 cut(s) 195
BcgI CGANNNNNNTGC 2 cut(s) 1163, 1197
BciT130I CCWGG 2 cut(s) 149, 1001
BciVI GTATCC 1 cut(s) 896
BclI TGATCA 2 cut(s) 139, 1036
BcoDI GTCTC 2 cut(s) 954, 1077
BfaI CTAG 7 cut(s) 128, 165, 287, 402, 486, 1203, 1229
BfuI GTATCC 1 cut(s) 896
BglI GCCNNNNNGGC 1 cut(s) 1199
BisI GCNGC 1 cut(s) 1005
BlnI CCTAGG 1 cut(s) 1228
BlsI GCNGC 1 cut(s) 1006
Bme1390I CCNGG 2 cut(s) 149, 1001
Bme18I GGWCC 2 cut(s) 596, 693
BmgT120I GGNCC 2 cut(s) 596, 693
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 149, 1001
BmrI ACTGGG 1 cut(s) 63
BmtI GCTAGC 2 cut(s) 168, 290
BmuI ACTGGG 1 cut(s) 63
BoxI GACNNNNGTC 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 567
BplI GAGNNNNNCTC 2 cut(s) 1079, 1111
BpmI CTGGAG 2 cut(s) 270, 301
BsaBI GATNNNNATC 2 cut(s) 78, 545
BsaJI CCNNGG 4 cut(s) 147, 148, 932, 1228
BsaXI ACNNNNNCTCC 2 cut(s) 609, 639
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 605
Bse1I ACTGG 4 cut(s) 58, 253, 284, 1107
Bse8I GATNNNNATC 2 cut(s) 78, 545
BseBI CCWGG 2 cut(s) 149, 1001
BseDI CCNNGG 4 cut(s) 147, 148, 932, 1228
BseGI GGATG 4 cut(s) 637, 942, 972, 1212
BseJI GATNNNNATC 2 cut(s) 78, 545
BseLI CCNNNNNNNGG 2 cut(s) 301, 605
BseMII CTCAG 1 cut(s) 1254
BseNI ACTGG 4 cut(s) 58, 253, 284, 1107
BseXI GCAGC 1 cut(s) 1016
BseYI CCCAGC 1 cut(s) 361
BshFI GGCC 4 cut(s) 720, 912, 944, 1233
BslI CCNNNNNNNGG 2 cut(s) 301, 605
BsmAI GTCTC 2 cut(s) 954, 1077
BsnI GGCC 4 cut(s) 720, 912, 944, 1233
Bsp143I GATC 5 cut(s) 79, 139, 203, 709, 1036
Bsp19I CCATGG 1 cut(s) 932
BspACI CCGC 1 cut(s) 891
BspANI GGCC 4 cut(s) 720, 912, 944, 1233
BspCNI CTCAG 1 cut(s) 1253
BspLI GGNNCC 1 cut(s) 81
BspOI GCTAGC 2 cut(s) 168, 290
BspPI GGATC 2 cut(s) 74, 87
BsrI ACTGG 4 cut(s) 58, 253, 284, 1107
BssECI CCNNGG 4 cut(s) 147, 148, 932, 1228
BssMI GATC 5 cut(s) 79, 139, 203, 709, 1036
BssT1I CCWWGG 2 cut(s) 932, 1228
Bst2UI CCWGG 2 cut(s) 149, 1001
Bst4CI ACNGT 5 cut(s) 188, 347, 566, 770, 827
BstC8I GCNNGC 5 cut(s) 166, 288, 891, 914, 1108
BstDEI CTNAG 3 cut(s) 113, 776, 1240
BstDSI CCRYGG 1 cut(s) 932
BstF5I GGATG 4 cut(s) 637, 942, 972, 1212
BstKTI GATC 5 cut(s) 82, 142, 206, 712, 1039
BstMAI GTCTC 2 cut(s) 954, 1077
BstMBI GATC 5 cut(s) 79, 139, 203, 709, 1036
BstMWI GCNNNNNNNGC 3 cut(s) 371, 1190, 1199
BstNI CCWGG 2 cut(s) 149, 1001
BstNSI RCATGY 2 cut(s) 1110, 1261
BstPAI GACNNNNGTC 1 cut(s) 27
BstSCI CCNGG 2 cut(s) 147, 999
BstV1I GCAGC 1 cut(s) 1016
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 1 cut(s) 79
BstXI CCANNNNNNTGG 1 cut(s) 807
BstYI RGATCY 1 cut(s) 79
BsuI GTATCC 1 cut(s) 896
BsuRI GGCC 4 cut(s) 720, 912, 944, 1233
BtgI CCRYGG 1 cut(s) 932
BtsCI GGATG 4 cut(s) 637, 942, 972, 1212
BtsI GCAGTG 2 cut(s) 1026, 1063
BtsIMutI CAGTG 4 cut(s) 352, 1026, 1063, 1100
Cac8I GCNNGC 5 cut(s) 166, 288, 891, 914, 1108
Cfr13I GGNCC 2 cut(s) 596, 693
Csp6I GTAC 1 cut(s) 771
CviAII CATG 7 cut(s) 65, 355, 933, 946, 1069, 1107, 1258
CviQI GTAC 1 cut(s) 771
DdeI CTNAG 3 cut(s) 113, 776, 1240
DpnI GATC 5 cut(s) 81, 141, 205, 711, 1038
DpnII GATC 5 cut(s) 79, 139, 203, 709, 1036
EaeI YGGCCR 1 cut(s) 910
Eco130I CCWWGG 2 cut(s) 932, 1228
Eco147I AGGCCT 1 cut(s) 720
Eco32I GATATC 1 cut(s) 881
Eco47I GGWCC 2 cut(s) 596, 693
Eco57I CTGAAG 4 cut(s) 402, 579, 803, 869
EcoO109I RGGNCCY 1 cut(s) 596
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 2 cut(s) 147, 999
EcoRV GATATC 1 cut(s) 881
EcoT14I CCWWGG 2 cut(s) 932, 1228
ErhI CCWWGG 2 cut(s) 932, 1228
FaeI CATG 7 cut(s) 68, 358, 936, 949, 1072, 1110, 1261
FalI AAGNNNNNCTT 4 cut(s) 293, 325, 979, 1011
FatI CATG 7 cut(s) 64, 354, 932, 945, 1068, 1106, 1257
FauI CCCGC 1 cut(s) 898
FbaI TGATCA 2 cut(s) 139, 1036
Fnu4HI GCNGC 1 cut(s) 1005
FokI GGATG 4 cut(s) 624, 949, 959, 1219
Fsp4HI GCNGC 1 cut(s) 1005
FspBI CTAG 7 cut(s) 128, 165, 287, 402, 486, 1203, 1229
GluI GCNGC 1 cut(s) 1005
GsaI CCCAGC 1 cut(s) 365
GsuI CTGGAG 2 cut(s) 270, 301
HaeIII GGCC 4 cut(s) 720, 912, 944, 1233
Hin1II CATG 7 cut(s) 68, 358, 936, 949, 1072, 1110, 1261
HindIII AAGCTT 1 cut(s) 653
HinfI GANTC 4 cut(s) 512, 546, 811, 1094
HphI GGTGA 1 cut(s) 839
Hpy166II GTNNAC 1 cut(s) 635
Hpy188I TCNGA 5 cut(s) 517, 540, 559, 758, 1243
Hpy188III TCNNGA 5 cut(s) 201, 335, 467, 953, 1043
Hpy8I GTNNAC 1 cut(s) 635
HpyAV CCTTC 5 cut(s) 20, 295, 589, 934, 961
HpyCH4III ACNGT 5 cut(s) 188, 347, 566, 770, 827
HpyCH4V TGCA 2 cut(s) 593, 1184
HpyF10VI GCNNNNNNNGC 3 cut(s) 371, 1190, 1199
HpyF3I CTNAG 3 cut(s) 113, 776, 1240
Hsp92II CATG 7 cut(s) 68, 358, 936, 949, 1072, 1110, 1261
Ksp22I TGATCA 2 cut(s) 139, 1036
Kzo9I GATC 5 cut(s) 79, 139, 203, 709, 1036
Lsp1109I GCAGC 1 cut(s) 1016
MaeI CTAG 7 cut(s) 128, 165, 287, 402, 486, 1203, 1229
MaeIII GTNAC 1 cut(s) 1058
MalI GATC 5 cut(s) 81, 141, 205, 711, 1038
MboI GATC 5 cut(s) 79, 139, 203, 709, 1036
MflI RGATCY 1 cut(s) 79
MlsI TGGCCA 1 cut(s) 912
MluCI AATT 7 cut(s) 420, 456, 527, 553, 830, 864, 919
MluNI TGGCCA 1 cut(s) 912
MlyI GAGTC 1 cut(s) 1088
MmeI TCCRAC 3 cut(s) 269, 586, 599
MnlI CCTC 4 cut(s) 70, 107, 276, 1168
Mox20I TGGCCA 1 cut(s) 912
MroXI GAANNNNTTC 3 cut(s) 420, 456, 810
MscI TGGCCA 1 cut(s) 912
MseI TTAA 3 cut(s) 621, 963, 1122
MslI CAYNNNNRTG 4 cut(s) 396, 805, 1067, 1105
Msp20I TGGCCA 1 cut(s) 912
MspR9I CCNGG 2 cut(s) 149, 1001
MvaI CCWGG 2 cut(s) 149, 1001
MwoI GCNNNNNNNGC 3 cut(s) 371, 1190, 1199
NcoI CCATGG 1 cut(s) 932
NdeII GATC 5 cut(s) 79, 139, 203, 709, 1036
NheI GCTAGC 2 cut(s) 164, 286
NlaIII CATG 7 cut(s) 68, 358, 936, 949, 1072, 1110, 1261
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 1058
NspI RCATGY 2 cut(s) 1110, 1261
PaeI GCATGC 1 cut(s) 1110
PasI CCCWGGG 1 cut(s) 148
PceI AGGCCT 1 cut(s) 720
PciI ACATGT 1 cut(s) 1257
PdmI GAANNNNTTC 3 cut(s) 420, 456, 810
PfeI GAWTC 3 cut(s) 512, 546, 811
PkrI GCNGC 1 cut(s) 1006
PleI GAGTC 1 cut(s) 1088
PpsI GAGTC 1 cut(s) 1088
PpuMI RGGWCCY 1 cut(s) 596
PscI ACATGT 1 cut(s) 1257
PshAI GACNNNNGTC 1 cut(s) 27
PsiI TTATAA 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 596
Psp6I CCWGG 2 cut(s) 147, 999
PspFI CCCAGC 1 cut(s) 361
PspGI CCWGG 2 cut(s) 147, 999
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 2 cut(s) 596, 693
PspPPI RGGWCCY 1 cut(s) 596
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 1 cut(s) 772
RsaNI GTAC 1 cut(s) 771
RseI CAYNNNNRTG 4 cut(s) 396, 805, 1067, 1105
SaqAI TTAA 3 cut(s) 621, 963, 1122
SatI GCNGC 1 cut(s) 1005
Sau3AI GATC 5 cut(s) 79, 139, 203, 709, 1036
Sau96I GGNCC 2 cut(s) 596, 693
SchI GAGTC 1 cut(s) 1088
ScrFI CCNGG 2 cut(s) 149, 1001
SinI GGWCC 2 cut(s) 596, 693
SmiMI CAYNNNNRTG 4 cut(s) 396, 805, 1067, 1105
SphI GCATGC 1 cut(s) 1110
Sse9I AATT 7 cut(s) 420, 456, 527, 553, 830, 864, 919
SseBI AGGCCT 1 cut(s) 720
SsiI CCGC 1 cut(s) 891
SspMI CTAG 7 cut(s) 128, 165, 287, 402, 486, 1203, 1229
StuI AGGCCT 1 cut(s) 720
StyD4I CCNGG 2 cut(s) 147, 999
StyI CCWWGG 2 cut(s) 932, 1228
TaaI ACNGT 5 cut(s) 188, 347, 566, 770, 827
TaqI TCGA 3 cut(s) 954, 1097, 1173
TasI AATT 7 cut(s) 420, 456, 527, 553, 830, 864, 919
TatI WGTACW 1 cut(s) 770
TfiI GAWTC 3 cut(s) 512, 546, 811
Tru1I TTAA 3 cut(s) 621, 963, 1122
Tru9I TTAA 3 cut(s) 621, 963, 1122
TscAI CASTG 4 cut(s) 352, 1033, 1063, 1107
TseFI GTSAC 1 cut(s) 1058
TseI GCWGC 1 cut(s) 1004
Tsp45I GTSAC 1 cut(s) 1058
TspDTI ATGAA 8 cut(s) 81, 413, 429, 574, 778, 803, 953, 1057
TspGWI ACGGA 1 cut(s) 630
TspRI CASTG 4 cut(s) 352, 1033, 1063, 1107
VpaK11BI GGWCC 2 cut(s) 596, 693
XapI RAATTY 5 cut(s) 420, 456, 527, 830, 919
XceI RCATGY 2 cut(s) 1110, 1261
XcmI CCANNNNNNNNNTGG 1 cut(s) 539
XmaJI CCTAGG 1 cut(s) 1228
XmnI GAANNNNTTC 3 cut(s) 420, 456, 810
XspI CTAG 7 cut(s) 128, 165, 287, 402, 486, 1203, 1229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.